Mercurial > repos > anton > vcfgeno2haplo
changeset 3:d6fd217a1f90 draft default tip
Uploaded
| author | anton |
|---|---|
| date | Mon, 15 Sep 2014 14:51:43 -0400 |
| parents | a6cd013745fd |
| children | |
| files | tool_dependencies.xml vcfgeno2haplo.xml |
| diffstat | 2 files changed, 4 insertions(+), 5 deletions(-) [+] |
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--- a/tool_dependencies.xml Wed Jun 25 16:48:39 2014 -0400 +++ b/tool_dependencies.xml Mon Sep 15 14:51:43 2014 -0400 @@ -1,6 +1,6 @@ <?xml version="1.0"?> <tool_dependency> - <package name="vcflib" version="86723982aa"> - <repository changeset_revision="a6826babf644" name="vcflib_86723982aa" owner="anton" toolshed="https://toolshed.g2.bx.psu.edu" /> + <package name="vcflib" version="8a5602bf07"> + <repository changeset_revision="bffe0495cd92" name="package_vcflib_8a5602bf07" owner="anton" toolshed="https://toolshed.g2.bx.psu.edu" /> </package> </tool_dependency>
--- a/vcfgeno2haplo.xml Wed Jun 25 16:48:39 2014 -0400 +++ b/vcfgeno2haplo.xml Mon Sep 15 14:51:43 2014 -0400 @@ -1,6 +1,6 @@ <tool id="vcfgeno2haplo" name="VCFgenotype-to-haplotype:" version="0.0.2"> <requirements> - <requirement type="package" version="86723982aa">vcflib</requirement> + <requirement type="package" version="8a5602bf07">vcflib</requirement> </requirements> <description>Convert genotype-based phased alleles into haplotype alleles</description> <command> @@ -36,7 +36,7 @@ <param name="input_vcf" type="data" format="vcf" label="Select VCF dataset" /> </when> </conditional> - <param name="window_size" type="text" size="4" value="30" label="compare records up to this many bp away (window size)" help="--window-size option (default = 30)" /> + <param name="window_size" type="text" size="4" value="30" label="compare records up to this many bp away" help="--window-size option (default = 30)" /> <param name="output_option" type="boolean" truevalue="-o" falsevalue="" label="What to report?" help="--only-variants option" /> <!-- <option value=" ">Output entire haplotype</option> <option value="-o">Don't output the entire haplotype, just concatenate REF/ALT strings (delimited by ":")</option> @@ -64,7 +64,6 @@ The options are:: - -r, --reference FILE FASTA reference file, required with -i and -u -w, --window-size N Merge variants at most this many bp apart (default 30) -o, --only-variants Don't output the entire haplotype, just concatenate REF/ALT strings (delimited by ":")