Mercurial > repos > anton > vcfgenotypes
diff vcfgenotypes.xml @ 0:6c636da8765c
Imported from capsule None
author | anton |
---|---|
date | Wed, 11 Jun 2014 17:11:28 -0400 |
parents | |
children | 606e32ff6241 |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/vcfgenotypes.xml Wed Jun 11 17:11:28 2014 -0400 @@ -0,0 +1,28 @@ +<tool id="vcfgenotypes" name="VCFgenotypes:" version="0.0.1"> +<requirements> + <requirement type="package" version="586c5ae5d57a38dae6b32ea831fb1f7cfa14c9bd">vcflib</requirement> +</requirements> + <description>Convert numerical representation of genotypes to allelic</description> + <command>vcfgenotypes "${vcf_input}" > "${out_file1}"</command> + <inputs> + <param format="vcf" name="vcf_input" type="data" label="Select VCF dataset"/> + </inputs> + <outputs> + <data format="tabular" name="out_file1" /> + </outputs> + <tests> + <test> + <param name="vcf_input" value="vcflib.vcf"/> + <output name="out_file1" file="vcfgenotypes-test1.tab"/> + </test> + </tests> + <help> + +Converts numerical representation of genotypes (standard in GT field) to the alleles provided in the call's ALT/REF fields. + +---- + +Vcfgenotypes is a part of VCFlib toolkit developed by Erik Garrison (https://github.com/ekg/vcflib). + +</help> +</tool>