Mercurial > repos > anton > vcfprimers
changeset 3:f3243301d74f draft default tip
Uploaded
| author | anton |
|---|---|
| date | Mon, 15 Sep 2014 14:53:14 -0400 |
| parents | 47dd84123b42 |
| children | |
| files | tool_dependencies.xml vcfprimers.xml |
| diffstat | 2 files changed, 4 insertions(+), 4 deletions(-) [+] |
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--- a/tool_dependencies.xml Wed Jun 25 16:50:33 2014 -0400 +++ b/tool_dependencies.xml Mon Sep 15 14:53:14 2014 -0400 @@ -1,6 +1,6 @@ <?xml version="1.0"?> <tool_dependency> - <package name="vcflib" version="86723982aa"> - <repository changeset_revision="a6826babf644" name="vcflib_86723982aa" owner="anton" toolshed="https://toolshed.g2.bx.psu.edu" /> + <package name="vcflib" version="8a5602bf07"> + <repository changeset_revision="bffe0495cd92" name="package_vcflib_8a5602bf07" owner="anton" toolshed="https://toolshed.g2.bx.psu.edu" /> </package> </tool_dependency>
--- a/vcfprimers.xml Wed Jun 25 16:50:33 2014 -0400 +++ b/vcfprimers.xml Mon Sep 15 14:53:14 2014 -0400 @@ -1,6 +1,6 @@ <tool id="vcfprimers" name="VCFprimers:" version="0.0.2"> <requirements> - <requirement type="package" version="86723982aa">vcflib</requirement> + <requirement type="package" version="8a5602bf07">vcflib</requirement> <!-- <requirement type="package" version="0.1.18">samtools</requirement> --> </requirements> <description>Extract flanking sequences for each VCF record</description> @@ -49,7 +49,7 @@ </tests> <help> -For each VCF record, extract the flanking sequences, and write them to stdout as FASTA +For each VCF record, extract the flanking sequences, and write them as FASTA records suitable for alignment. This tool is intended for use in designing validation experiments. Primers extracted which would flank all of the alleles at multi-allelic sites. The name of the FASTA "reads" indicates the VCF record which they apply to.