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comparison vcfselectsamples.xml @ 3:acad111c2466 draft default tip

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author anton
date Mon, 15 Sep 2014 14:53:50 -0400
parents ca345cfe7119
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2:ca345cfe7119 3:acad111c2466
1 <tool id="vcfselectsamples" name="VCFselectsamples:" version="0.0.2"> 1 <tool id="vcfselectsamples" name="VCFselectsamples:" version="0.0.2">
2 <requirements> 2 <requirements>
3 <requirement type="package" version="86723982aa">vcflib</requirement> 3 <requirement type="package" version="8a5602bf07">vcflib</requirement>
4 </requirements> 4 </requirements>
5 <description>Select samples from a VCF dataset</description> 5 <description>Select samples from a VCF dataset</description>
6 <command>vcfkeepsamples "${input1}" ${ ' '.join( map( lambda x:'"%s"' % ( x ), str($vcf_samples ).split(",") ) ) } > "${out_file1}"</command> 6 <command>vcfkeepsamples "${input1}" ${ ' '.join( map( lambda x:'"%s"' % ( x ), str($vcf_samples ).split(",") ) ) } > "${out_file1}"</command>
7 <inputs> 7 <inputs>
8 <param format="vcf" name="input1" type="data" label="Select VCF dataset" /> 8 <param format="vcf" name="input1" type="data" label="Select VCF dataset" />