--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/samplesortedPESAM_C.sam	Wed Apr 01 16:48:58 2015 -0400
@@ -0,0 +1,10 @@
+M01368:22:000000000-A4T24:1:1101:10010:3775_1:N:0:2_1_per1_1	113	shifted	720	37	40M	=	541	-46	TTCGTGCACACAGCCCAGCTTGGAGCGAACGACCTACACC	HHFG@IIHHHHHIHHFHHGFGGGGDBDDEDDDBBB?????	XT:A:U	NM:i:0	SM:i:37	AM:i:37	X0:i:1	X1:i:0	XM:i:0	XO:i:0	XG:i:0	MD:Z:40
+M01368:22:000000000-A4T24:1:1101:10010:3775_1:N:0:2_1_per1_1	177	shifted	541	37	173M	=	720	46	CTTCTAGTGTAGCCGTAGTTAGGCCACCACTTCAAGAACTCTGTAGCACCGCCTACATACCTCGCTCTGCTAATCCTGTTACCAGTGGCTGCTGCCAGTGGCGATAAGTCGTGTCTTACCGGGTTGGACTCAAGACGATAGTTACCGGATAAGGCGCAGCGGTCGGGCTGAAC	::GECC:*:)D<GEGGGECCCEC?00E?::CCCCEEECC:C*GEC4'.>ACGGEC:CC?>><DCE?C:EC?GECE?:CCECGEEC*GEECEC:GEEGE?GGECC:ECA2CC*CCC8DEGGEGC=CGECEAEGEEDGGEDEGD=EBGGGFDHHHHHHHHEEHHHHHIIHFIIHH	XT:A:U	NM:i:0	SM:i:37	AM:i:37	X0:i:1	X1:i:0	XM:i:0	XO:i:0	XG:i:0	MD:Z:173
+M01368:22:000000000-A4T24:1:1101:10015:2849_1:N:0:2_1_per1_2	113	shifted	4089	37	170M	=	4008	-176	GCACAACATGGGGGATCATGTAACTCGCCTTGATCGTTGGGAACCGGAGCTGAATGAAGCCATACCAAACGACGAGCGTGACACCACGATGCCTGTAGCAATGGCAACAACGTTGCGCAAACTATTAACTGGCGAACTACTTACTCTAGCTTCCCGGCAACAATTAATAG	GECGGGGGGGGGGGGEGEGGGGD>2GEGGGGGEEGGGGGGGGGGGGGEEECEGEAGGEEGEB>=GGFGEAGHHHEHHHFHFF?ED;HFIHHIIIIHIIHHHHIHHHHIHHHHHHHHIIIIHIHHHHIHHHHHIIHHIIHHIIHIIIIIGGGGGGDDDDDDDDBBB????<	XT:A:U	NM:i:0	SM:i:37	AM:i:37	X0:i:1	X1:i:0	XM:i:0	XO:i:0	XG:i:0	MD:Z:170
+M01368:22:000000000-A4T24:1:1101:10015:2849_1:N:0:2_1_per1_2	177	shifted	4008	37	75M	=	4089	176	TGCCATAACCATGAGTGATAACACTGCGGCCAACTTACTTCTGACAACGATCGGAGGACCGAAGGAGCTAACCGC	CEGGEEEECC?:EEGECGGGGECGGGGEEGGEEGCCGEGGGGGGGGGGDGGGGGE>EEGGGGGGGGGGGAGGGGE	XT:A:U	NM:i:0	SM:i:37	AM:i:37	X0:i:1	X1:i:0	XM:i:0	XO:i:0	XG:i:0	MD:Z:75
+M01368:22:000000000-A4T24:1:1101:10070:4955_1:N:0:2_1_per1_1	129	shifted	1937	37	164M	=	1850	-87	TCAGATAGGGGTCCCTTGACCACCATCCTCCGTGAAATCAATATCCCGCACAAGAGTGCTACTCTCCTCGCTCCGGGCCCATAACACTTGGGGGTAGCTAAAGTGAACTGTATCCGACATCTGGTTCCTACTTCAGGGCCATAAAGCCTAAATAGCCCACACGT	HHHHIHHHHHHHHHHHHHHHHHHHHHGGFGGGGGGGHGGGGGGGGGGGGEGGGGGGAEEGGGEGGGGGGEGEEGGGGGGGGGGGGGGGGGGGGGGGGGGGGGECGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGEGGGCEGEGG	XT:A:U	NM:i:1	SM:i:37	AM:i:37	X0:i:1	X1:i:0	XM:i:1	XO:i:0	XG:i:0	MD:Z:138T25
+M01368:22:000000000-A4T24:1:1101:10070:4955_1:N:0:2_1_per1_1	65	shifted	1850	37	81M	=	1937	87	CCCTTAACAGTACATAGTACATAAAGCCATTTACCGTACATAGCACATTACAGTCAAATCCCTTCTCGTCCCCATGGATGA	?????BBBEEDBBDDDGGGGGGIIIIIIIIIIIIIHHHHHIIIIIIIIIIIIIIIIIIIIIIIIIIIHIHHHIIIIIIHGH	XT:A:U	NM:i:0	SM:i:37	AM:i:37	X0:i:1	X1:i:0	XM:i:0	XO:i:0	XG:i:0	MD:Z:81
+M01368:22:000000000-A4T24:1:1101:10070:4955_1:N:0:2_1_per1_2	129	shifted	2031	37	70M	=	1850	-181	TAGCTAAAGTGAACTGTATCCGACATCTGGTTCCTACTTCAGGGCCATAAAGCCTAAATAGCCCACACGT	GGGGGGGGECGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGEGGGCEGEGG	XT:A:U	NM:i:1	SM:i:37	AM:i:37	X0:i:1	X1:i:0	XM:i:1	XO:i:0	XG:i:0	MD:Z:44T25
+M01368:22:000000000-A4T24:1:1101:10070:4955_1:N:0:2_1_per1_2	65	shifted	1850	37	176M	=	2031	181	CCCTTAACAGTACATAGTACATAAAGCCATTTACCGTACATAGCACATTACAGTCAAATCCCTTCTCGTCCCCATGGATGACCCCCCTCAGATAGGGGTCCCTTGACCACCATCCTCCGTGAAATCAATATCCCGCACAAGAGTGCTACTCTCCTCGCTCCGGGCCCATAACACTT	?????BBBEEDBBDDDGGGGGGIIIIIIIIIIIIIHHHHHIIIIIIIIIIIIIIIIIIIIIIIIIIIHIHHHIIIIIIHGHIIIHHHHHHHIHHHHHHHHHHHHHHHHHHHHHGGFGGGGGGGHGGGGGGGGGGGGEGGGGGGAEEGGGEGGGGGGEGEEGGGGGGGGGGGGGGGG	XT:A:U	NM:i:0	SM:i:37	AM:i:37	X0:i:1	X1:i:0	XM:i:0	XO:i:0	XG:i:0	MD:Z:176
+M01368:22:000000000-A4T24:1:1101:10126:5433_1:N:0:2_1_per1_1	129	shifted	1523	37	21M	=	1429	-94	GTCTTTAACTCCACCATTAGC	GGGEGGEGGGGGCGGGGGEGG	XT:A:U	NM:i:0	SM:i:37	AM:i:37	X0:i:1	X1:i:0	XM:i:0	XO:i:0	XG:i:0	MD:Z:21
+M01368:22:000000000-A4T24:1:1101:10126:5433_1:N:0:2_1_per1_1	65	shifted	1429	37	89M	=	1523	94	CTATGCATCCAACGCGTTGGGAGCTCTCCCATATGGTCGACCTGCAGGCGGCCGCGAATTCACTAGTGATTTCCAAGGACAAATCAGAG	?????BBBDDDDDDDDGGGFGGFEHIIIIIIIHIIIHIHHHHHIIHFHHHHHHHHHHHHHHHHHHHHGGGGGGGGGGGGGGGGGGEGEE	XT:A:U	NM:i:0	SM:i:37	AM:i:37	X0:i:1	X1:i:0	XM:i:0	XO:i:0	XG:i:0	MD:Z:89