Mercurial > repos > arkarachai-fungtammasan > str_fm
view test-data/PCRinclude.allrate.bymajorallele @ 14:20dc70f85ff7 draft default tip
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author | arkarachai-fungtammasan |
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date | Sun, 24 Jul 2016 18:15:32 -0400 |
parents | 07588b899c13 |
children |
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36 34 1 AC 37 37 10 AC 37 35 3 AC 37 31 1 AC 37 39 1 AC 38 38 4 AC 38 36 1 AC 6 6 1521439 AC 7 7 513952 AC 8 8 134603 AC 8 6 2 AC 9 9 60741 AC 9 7 3 AC 9 11 1 AC 10 10 21772 AG 10 8 3 AG 10 12 1 AG 11 11 13880 AG 11 9 10 AG 11 13 1 AG 12 12 5628 AG 12 10 13 AG 12 14 4 AG 13 13 4494 AG 13 11 17 AG 14 14 1898 AG 14 12 15 AG 15 15 2427 AG 15 13 18 AG 16 16 1076 AG 16 14 24 AG 16 12 1 AG 17 17 874 AG 17 15 12 AG 17 19 1 AG 17 13 1 AG 18 18 536 AG 18 16 20 AG 18 14 1 AG 19 19 563 AG 19 17 25 AG 20 20 201 AG 20 18 14 AG 21 21 260 AG 21 19 10 AG 22 22 83 AG 22 20 5 AG 23 23 147 AG 23 21 5 AG 23 25 1 AG 24 24 99 AG 24 22 4 AG 24 18 1 AG 25 25 62 AG 25 23 3 AG 25 27 1 AG 26 26 38 AG 26 24 8 AG 27 27 24 AG 27 25 3 AG 27 23 1 AG 28 28 14 AG 28 26 2 AG 29 29 12 AG 29 27 5 AG 29 31 1 AG 30 30 7 AG 30 28 2 AG 31 31 7 AG 31 27 3 AG 31 23 1 AG 32 32 4 AG 32 28 1 AG 6 6 1880822 AG 7 7 684837 AG 7 9 1 AG 8 8 183381 AG 9 9 75547 AG 9 7 6 AG 9 11 1 AG 10 10 18179 AT 10 8 7 AT 10 12 4 AT 11 11 8969 AT 11 9 5 AT 11 13 2 AT 12 12 4888 AT 12 10 8 AT 12 14 2 AT 13 13 2785 AT 13 11 17 AT 13 15 1 AT 14 14 2310 AT 14 12 40 AT 14 16 4 AT 14 10 2 AT 15 15 1461 AT 15 13 33 AT 15 11 1 AT 15 17 1 AT 16 16 879 AT 16 14 42 AT 16 18 2 AT 16 12 1 AT 17 17 599 AT 17 15 38 AT 17 19 2 AT 17 13 1 AT 18 18 367 AT 18 16 29 AT 18 20 7 AT 18 14 1 AT 19 19 223 AT 19 17 34 AT 19 21 3 AT 20 20 97 AT 20 18 14 AT 20 16 2 AT 20 22 1 AT 21 21 60 AT 21 19 18 AT 21 17 1 AT 22 22 53 AT 22 20 15 AT 22 24 5 AT 22 18 3 AT 23 23 11 AT 23 21 1 AT 24 24 7 AT 24 20 2 AT 24 22 2 AT 6 6 1671932 AT 6 8 1 AT 7 7 595145 AT 8 8 195533 AT 8 10 5 AT 8 6 2 AT 9 9 52576 AT 9 7 3 AT 10 10 17 CG 11 11 17 CG 12 12 6 CG 6 6 4097 CG 7 7 678 CG 8 8 184 CG 9 9 19 CG 10 10 19552 AAC 11 11 19003 AAC 12 12 6245 AAC 12 9 1 AAC 13 13 3406 AAC 14 14 8448 AAC 14 11 2 AAC 15 15 2356 AAC 15 12 6 AAC 16 16 1373 AAC 16 13 4 AAC 17 17 3140 AAC 17 14 5 AAC 18 18 944 AAC 18 15 2 AAC 19 19 456 AAC 19 16 1 AAC 20 20 1474 AAC 20 17 3 AAC 21 21 328 AAC 21 18 1 AAC 22 22 178 AAC 23 23 538 AAC 23 26 1 AAC 24 24 112 AAC 25 25 60 AAC 26 26 239 AAC 26 23 1 AAC 27 27 45 AAC 28 28 58 AAC 28 25 2 AAC 29 29 77 AAC 30 30 17 AAC 31 31 38 AAC 31 28 1 AAC 32 32 94 AAC 32 29 3 AAC 33 33 15 AAC 35 35 55 AAC 35 32 1 AAC 38 38 12 AAC 41 41 6 AAC 9 9 57212 AAC 10 10 31455 AAG 11 11 11876 AAG 12 12 3458 AAG 12 9 6 AAG 13 13 1141 AAG 14 14 928 AAG 15 15 548 AAG 15 12 4 AAG 16 16 189 AAG 17 17 235 AAG 18 18 63 AAG 19 19 66 AAG 20 20 122 AAG 22 22 11 AAG 23 23 33 AAG 9 9 104524 AAG 10 10 69106 AAT 11 11 30381 AAT 12 12 12001 AAT 12 9 1 AAT 13 13 7168 AAT 13 10 2 AAT 14 14 5470 AAT 14 11 3 AAT 15 15 2524 AAT 15 12 3 AAT 16 16 1733 AAT 16 13 1 AAT 17 17 1324 AAT 17 14 3 AAT 18 18 1022 AAT 18 15 3 AAT 19 19 502 AAT 19 16 3 AAT 20 20 570 AAT 20 17 2 AAT 21 21 370 AAT 21 18 1 AAT 22 22 98 AAT 23 23 164 AAT 23 20 3 AAT 24 24 143 AAT 24 21 1 AAT 25 25 122 AAT 25 22 1 AAT 26 26 45 AAT 26 23 2 AAT 27 27 32 AAT 27 24 1 AAT 28 28 6 AAT 29 29 64 AAT 29 26 1 AAT 30 30 28 AAT 30 24 1 AAT 31 31 9 AAT 32 32 9 AAT 32 29 1 AAT 38 38 6 AAT 9 9 179182 AAT 9 12 1 AAT 10 10 14290 ACC 11 11 5692 ACC 12 12 1795 ACC 13 13 1141 ACC 14 14 545 ACC 15 15 308 ACC 16 16 162 ACC 17 17 107 ACC 18 18 23 ACC 19 19 35 ACC 20 20 44 ACC 21 21 5 ACC 22 22 5 ACC 22 19 1 ACC 23 23 11 ACC 25 25 7 ACC 26 26 7 ACC 27 27 10 ACC 28 28 24 ACC 28 25 1 ACC 35 35 5 ACC 9 9 46614 ACC 10 10 2865 ACG 11 11 900 ACG 12 12 325 ACG 13 13 82 ACG 14 14 83 ACG 9 9 9465 ACG 10 10 6269 ACT 11 11 2284 ACT 12 12 634 ACT 13 13 441 ACT 14 14 295 ACT 15 15 118 ACT 16 16 60 ACT 17 17 71 ACT 18 18 58 ACT 19 19 42 ACT 20 20 24 ACT 24 24 5 ACT 37 37 8 ACT 41 41 5 ACT 41 35 1 ACT 9 9 20025 ACT 10 10 2897 AGC 11 11 948 AGC 12 12 320 AGC 13 13 97 AGC 14 14 87 AGC 15 15 13 AGC 16 16 9 AGC 17 17 25 AGC 17 14 1 AGC 9 9 9579 AGC 10 10 21141 AGG 11 11 8128 AGG 12 12 2964 AGG 13 13 1209 AGG 14 14 860 AGG 15 15 320 AGG 16 16 190 AGG 17 17 225 AGG 18 18 147 AGG 20 20 80 AGG 21 21 9 AGG 22 22 35 AGG 23 23 27 AGG 24 24 8 AGG 26 26 9 AGG 9 9 57350 AGG 10 10 5964 ATC 11 11 2346 ATC 12 12 789 ATC 13 13 386 ATC 14 14 285 ATC 15 15 165 ATC 16 16 93 ATC 17 17 149 ATC 18 18 51 ATC 19 19 6 ATC 20 20 15 ATC 21 21 15 ATC 22 22 29 ATC 23 23 25 ATC 24 24 24 ATC 26 26 34 ATC 27 27 9 ATC 28 28 30 ATC 29 29 8 ATC 30 30 8 ATC 31 31 11 ATC 34 34 11 ATC 34 31 1 ATC 36 36 5 ATC 9 9 19837 ATC 10 10 11 CCG 11 11 24 CCG 14 14 5 CCG 16 16 5 CCG 9 9 135 CCG 12 12 10192 AAAC 13 13 4917 AAAC 14 14 4704 AAAC 15 15 12713 AAAC 16 16 2415 AAAC 17 17 1431 AAAC 18 18 1861 AAAC 18 14 2 AAAC 19 19 5254 AAAC 19 15 2 AAAC 19 23 1 AAAC 20 20 913 AAAC 20 16 1 AAAC 21 21 615 AAAC 22 22 509 AAAC 22 18 2 AAAC 23 23 2249 AAAC 23 19 5 AAAC 23 15 1 AAAC 24 24 329 AAAC 24 20 2 AAAC 25 25 230 AAAC 25 21 1 AAAC 26 26 175 AAAC 27 27 548 AAAC 27 23 2 AAAC 28 28 195 AAAC 28 24 1 AAAC 29 29 62 AAAC 30 30 67 AAAC 31 31 165 AAAC 31 27 1 AAAC 32 32 64 AAAC 33 33 63 AAAC 34 34 21 AAAC 35 35 40 AAAC 36 36 55 AAAC 37 37 6 AAAC 38 38 8 AAAC 39 39 10 AAAC 40 40 7 AAAC 45 45 7 AAAC 12 12 12855 AAAG 12 16 13 AAAG 12 20 9 AAAG 12 18 2 AAAG 13 13 6727 AAAG 14 14 3699 AAAG 14 13 8 AAAG 15 15 3858 AAAG 15 17 6 AAAG 15 13 1 AAAG 16 16 1244 AAAG 17 17 750 AAAG 17 13 1 AAAG 18 18 380 AAAG 18 20 5 AAAG 18 14 1 AAAG 19 19 1164 AAAG 19 15 1 AAAG 20 20 153 AAAG 21 21 186 AAAG 22 22 115 AAAG 23 23 321 AAAG 23 19 1 AAAG 24 24 82 AAAG 25 25 89 AAAG 26 26 26 AAAG 26 13 3 AAAG 27 27 64 AAAG 28 28 36 AAAG 29 29 32 AAAG 31 31 31 AAAG 33 33 19 AAAG 35 35 10 AAAG 36 36 11 AAAG 38 38 16 AAAG 41 41 5 AAAG 12 12 23143 AAAT 13 13 10045 AAAT 14 14 6815 AAAT 15 15 8439 AAAT 16 16 3102 AAAT 16 12 2 AAAT 17 17 2018 AAAT 17 13 2 AAAT 18 18 2044 AAAT 19 19 2955 AAAT 19 15 1 AAAT 19 14 1 AAAT 20 20 909 AAAT 21 21 711 AAAT 21 17 2 AAAT 22 22 500 AAAT 22 18 2 AAAT 23 23 993 AAAT 23 19 3 AAAT 24 24 382 AAAT 24 20 3 AAAT 25 25 190 AAAT 26 26 185 AAAT 26 22 1 AAAT 27 27 281 AAAT 27 23 2 AAAT 28 28 165 AAAT 28 24 2 AAAT 29 29 48 AAAT 30 30 46 AAAT 31 31 101 AAAT 32 32 28 AAAT 33 33 19 AAAT 34 34 24 AAAT 34 30 1 AAAT 35 35 41 AAAT 35 31 2 AAAT 36 36 16 AAAT 37 37 6 AAAT 38 38 5 AAAT 39 39 20 AAAT 39 35 1 AAAT 40 40 5 AAAT 41 41 10 AAAT 42 42 6 AAAT 45 45 6 AAAT 12 12 1468 AACC 13 13 590 AACC 14 14 318 AACC 15 15 163 AACC 16 16 102 AACC 17 17 106 AACC 18 18 18 AACC 19 19 34 AACC 20 20 7 AACC 22 22 7 AACC 23 23 13 AACC 24 24 16 AACC 25 25 9 AACC 31 31 9 AACC 12 12 214 AACG 13 13 135 AACG 14 14 39 AACG 15 15 45 AACG 12 12 522 AACT 13 13 142 AACT 14 14 143 AACT 15 15 88 AACT 16 16 16 AACT 17 17 51 AACT 18 18 7 AACT 20 20 21 AACT 21 21 27 AACT 23 23 7 AACT 24 24 11 AACT 30 30 5 AACT 12 12 346 AAGC 13 13 83 AAGC 14 14 60 AAGC 15 15 40 AAGC 16 16 21 AAGC 18 18 9 AAGC 19 19 7 AAGC 12 12 4943 AAGG 13 13 2714 AAGG 14 14 1385 AAGG 14 15 3 AAGG 15 15 949 AAGG 16 16 612 AAGG 16 14 4 AAGG 17 17 331 AAGG 18 18 362 AAGG 19 19 204 AAGG 20 20 138 AAGG 21 21 149 AAGG 22 22 68 AAGG 23 23 49 AAGG 24 24 27 AAGG 25 25 44 AAGG 26 26 8 AAGG 27 27 14 AAGG 28 28 14 AAGG 29 29 14 AAGG 30 30 12 AAGG 31 31 23 AAGG 34 34 11 AAGG 43 43 6 AAGG 12 12 2676 AAGT 13 13 1438 AAGT 14 14 940 AAGT 15 15 649 AAGT 16 16 305 AAGT 17 17 291 AAGT 18 18 181 AAGT 19 19 55 AAGT 20 20 73 AAGT 21 21 8 AAGT 22 22 43 AAGT 22 26 1 AAGT 23 23 32 AAGT 23 19 1 AAGT 24 24 18 AAGT 25 25 19 AAGT 26 26 8 AAGT 27 27 12 AAGT 29 29 18 AAGT 30 30 12 AAGT 31 31 12 AAGT 32 32 11 AAGT 33 33 35 AAGT 34 34 9 AAGT 35 35 6 AAGT 12 12 594 AATC 13 13 205 AATC 14 14 88 AATC 15 15 112 AATC 16 16 20 AATC 17 17 81 AATC 18 18 23 AATC 21 21 13 AATC 22 22 8 AATC 24 24 19 AATC 26 26 7 AATC 28 28 9 AATC 33 33 6 AATC 12 12 2293 AATG 13 13 1226 AATG 14 14 678 AATG 15 15 455 AATG 16 16 222 AATG 17 17 211 AATG 18 18 104 AATG 19 19 79 AATG 20 20 40 AATG 21 21 33 AATG 22 22 73 AATG 23 23 24 AATG 24 24 16 AATG 25 25 18 AATG 26 26 15 AATG 27 27 22 AATG 27 23 1 AATG 28 28 5 AATG 32 32 17 AATG 33 33 16 AATG 12 12 2633 AATT 13 13 1086 AATT 14 14 1052 AATT 15 15 386 AATT 16 16 393 AATT 17 17 98 AATT 18 18 104 AATT 19 19 105 AATT 20 20 34 AATT 21 21 12 AATT 22 22 20 AATT 25 25 18 AATT 26 26 25 AATT 27 27 7 AATT 29 29 7 AATT 35 35 12 AATT 12 12 1406 ACAG 13 13 964 ACAG 14 14 300 ACAG 15 15 130 ACAG 16 16 102 ACAG 17 17 49 ACAG 18 18 30 ACAG 19 19 88 ACAG 20 20 5 ACAG 23 23 5 ACAG 12 12 4868 ACAT 12 15 4 ACAT 13 13 3216 ACAT 14 14 957 ACAT 15 15 1052 ACAT 16 16 588 ACAT 17 17 422 ACAT 18 18 239 ACAT 19 19 238 ACAT 19 15 1 ACAT 20 20 25 ACAT 21 21 79 ACAT 22 22 20 ACAT 23 23 38 ACAT 27 27 42 ACAT 29 29 18 ACAT 31 31 5 ACAT 32 32 5 ACAT 35 35 6 ACAT 36 36 9 ACAT 41 41 14 ACAT 44 44 8 ACAT 44 40 1 ACAT 50 50 12 ACAT 12 12 833 ACCC 13 13 345 ACCC 14 14 190 ACCC 15 15 60 ACCC 16 16 12 ACCC 17 17 15 ACCC 19 19 8 ACCG 12 12 416 ACCT 13 13 123 ACCT 14 14 140 ACCT 15 15 69 ACCT 16 16 41 ACCT 17 17 45 ACCT 19 19 18 ACCT 20 20 27 ACCT 21 21 19 ACCT 22 22 6 ACCT 27 27 13 ACCT 28 28 7 ACCT 29 29 9 ACCT 30 30 7 ACCT 34 34 6 ACCT 45 45 5 ACCT 12 12 84 ACGC 13 13 52 ACGC 15 15 63 ACGC 12 12 433 ACGG 13 13 163 ACGG 14 14 38 ACGG 15 15 44 ACGG 16 16 7 ACGG 17 17 11 ACGG 19 19 6 ACGG 25 25 10 ACGG 12 12 1119 ACGT 13 13 509 ACGT 14 14 338 ACGT 15 15 16 ACGT 16 16 66 ACGT 17 17 7 ACGT 19 19 27 ACGT 12 12 2211 ACTC 13 13 685 ACTC 14 14 188 ACTC 15 15 151 ACTC 16 16 91 ACTC 18 18 17 ACTC 19 19 24 ACTC 20 20 23 ACTC 21 21 13 ACTC 23 23 19 ACTC 45 45 8 ACTC 12 12 161 ACTG 13 13 69 ACTG 14 14 7 ACTG 15 15 14 ACTG 16 16 15 ACTG 12 12 3118 AGAT 13 13 1216 AGAT 14 14 1084 AGAT 15 15 869 AGAT 16 16 508 AGAT 17 17 322 AGAT 18 18 159 AGAT 19 19 258 AGAT 20 20 63 AGAT 21 21 84 AGAT 22 22 69 AGAT 22 14 6 AGAT 23 23 112 AGAT 24 24 107 AGAT 25 25 36 AGAT 26 26 113 AGAT 27 27 42 AGAT 28 28 58 AGAT 29 29 37 AGAT 30 30 16 AGAT 31 31 32 AGAT 32 32 24 AGAT 33 33 10 AGAT 34 34 43 AGAT 35 35 6 AGAT 36 36 13 AGAT 36 32 1 AGAT 37 37 35 AGAT 38 38 34 AGAT 39 39 20 AGAT 39 35 2 AGAT 40 40 27 AGAT 41 41 29 AGAT 42 42 30 AGAT 43 43 87 AGAT 44 44 67 AGAT 45 45 20 AGAT 46 46 15 AGAT 47 47 28 AGAT 48 48 26 AGAT 49 49 13 AGAT 50 50 11 AGAT 52 52 5 AGAT 54 54 6 AGAT 12 12 236 AGCC 13 13 109 AGCC 14 14 17 AGCC 15 15 14 AGCC 16 16 8 AGCC 18 18 12 AGCC 21 21 18 AGCC 23 23 13 AGCC 12 12 23 AGCG 13 13 19 AGCG 18 18 9 AGCG 12 12 272 AGCT 13 13 89 AGCT 14 14 108 AGCT 15 15 49 AGCT 16 16 19 AGCT 17 17 19 AGCT 18 18 19 AGCT 19 19 44 AGCT 22 22 12 AGCT 27 27 16 AGCT 12 12 87 AGGC 13 13 19 AGGC 14 14 16 AGGC 18 18 7 AGGC 12 12 3610 AGGG 13 13 1980 AGGG 14 14 1095 AGGG 15 15 624 AGGG 16 16 159 AGGG 17 17 59 AGGG 18 18 43 AGGG 19 19 60 AGGG 20 20 49 AGGG 21 21 12 AGGG 23 23 10 AGGG 12 12 531 ATCC 13 13 323 ATCC 14 14 221 ATCC 15 15 58 ATCC 16 16 78 ATCC 17 17 38 ATCC 18 18 12 ATCC 19 19 19 ATCC 20 20 17 ATCC 21 21 44 ATCC 22 22 12 ATCC 23 23 39 ATCC 24 24 11 ATCC 25 25 12 ATCC 27 27 10 ATCC 32 32 6 ATCC 39 39 8 ATCC 40 40 6 ATCC 48 48 7 ATCC 12 12 272 ATCG 13 13 89 ATCG 14 14 108 ATCG 15 15 49 ATCG 16 16 19 ATCG 17 17 19 ATCG 18 18 19 ATCG 19 19 44 ATCG 22 22 12 ATCG 27 27 16 ATCG 12 12 1119 ATGC 13 13 509 ATGC 14 14 338 ATGC 15 15 16 ATGC 16 16 66 ATGC 17 17 7 ATGC 19 19 27 ATGC 12 12 13 CCCG 12 12 178 AGTC 13 13 77 AGTC 14 14 13 AGTC 15 15 12 AGTC