Mercurial > repos > artbio > artbio_mutect2

comparison macros.xml @ 1:2b6ee93fd144 draft

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"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/artbio_mutect2 commit 5f88428431700b059b950043d24c46ab92e580de"
author artbio
date Sat, 09 May 2020 15:08:07 -0400
parents 504de035ac0f
children 5d9c84514103
comparison
equal deleted inserted replaced
0:504de035ac0f 1:2b6ee93fd144
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <macros> 2 <macros>
3 <token name="@VERSION@">4.1.4.0</token> 3 <token name="@VERSION@">4.1.4.0</token>
4 <token name="@WRAPPER_VERSION@">@VERSION@+galaxy1</token> 4 <token name="@WRAPPER_VERSION@">@VERSION@+artbio2</token>
5 5
6 <xml name="requirements"> 6 <xml name="requirements">
7 <requirements> 7 <requirements>
8 <requirement type="package" version="@VERSION@">gatk4</requirement> 8 <requirement type="package" version="@VERSION@">gatk4</requirement>
9 <requirement type="package" version="0.2.5">tabix</requirement> 9 <requirement type="package" version="0.2.5">tabix</requirement>
350 #end if 350 #end if
351 #end for 351 #end for
352 ]]></template> 352 ]]></template>
353 353
354 <xml name="gatk_normal_bam_req_params"> 354 <xml name="gatk_normal_bam_req_params">
355 <param name="normal" argument="--normal" type="data" format="bam,sam" label="Input Tumor BAM/SAM/CRAM file" /> 355 <param name="normal" argument="--normal" type="data" format="bam,sam" label="Input Normal BAM/SAM/CRAM file" />
356 </xml> 356 </xml>
357 357
358 <template name="picard_normal_bam_index"><![CDATA[ 358 <template name="picard_normal_bam_index"><![CDATA[
359 #if $normal.is_of_type("bam") 359 #if $normal.is_of_type("bam")
360 ln -s $INPUT normal.bam && 360 ln -s $INPUT normal.bam &&