Mercurial > repos > artbio > artbio_mutect2

diff artbio_mutect2.xml @ 1:2b6ee93fd144 draft

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"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/artbio_mutect2 commit 5f88428431700b059b950043d24c46ab92e580de"
author artbio
date Sat, 09 May 2020 15:08:07 -0400
parents 504de035ac0f
children 5d9c84514103
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--- a/artbio_mutect2.xml	Thu May 07 12:29:36 2020 -0400
+++ b/artbio_mutect2.xml	Sat May 09 15:08:07 2020 -0400
@@ -19,7 +19,7 @@
             ln -s '$reference_source.reference_sequence' reference.fa &&
             samtools faidx reference.fa &&
             gatk CreateSequenceDictionary --REFERENCE="reference.fa" --OUTPUT="reference.dict" &&
-        #else if str($reference_source.reference_source_selector) == 'history'
+        #else if str($reference_source.reference_source_selector) == 'cached'
             ln -s '$reference_source.reference_sequence.fields.path' reference.fa &&
             samtools faidx reference.fa &&
             gatk CreateSequenceDictionary --REFERENCE="reference.fa" --OUTPUT="reference.dict" &&