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comparison bigwig_to_wig.xml @ 1:ac8ea1ca115d draft default tip

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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/main/tools/bigwig_to_wig commit 85bdb086a4aa403465844a0b10399440b31b65a7
author artbio
date Fri, 06 Oct 2023 00:19:35 +0000
parents ee2fbee916f7
children
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0:ee2fbee916f7 1:ac8ea1ca115d
1 <tool id="bigwig_to_wig" name="BigWig to Wig" version="2.0.0"> 1 <tool id="bigwig_to_wig" name="BigWig to Wig" version="@VERSION@">
2 <description>converter</description> 2 <description>converter</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements"/> 6 <expand macro="requirements"/>
7 <stdio> 7 <stdio>
8 <exit_code range="1:" level="fatal" description="Tool exception" /> 8 <exit_code range="1:" level="fatal" description="Tool exception" />
9 </stdio> 9 </stdio>
10 <command detect_errors="exit_code"><![CDATA[ 10 <command detect_errors="exit_code"><![CDATA[
11 sh $__tool_directory__/bigwig_to_wig.sh -f $input -b $bin_size -l $mylab > $output 11 bash $__tool_directory__/bigwig_to_wig.sh -f $input -b $bin_size -l $mylab > $output
12 ]]></command> 12 ]]></command>
13 <inputs> 13 <inputs>
14 <param name="input" format="bigwig" type="data" label="BigWig file to convert" /> 14 <param name="input" format="bigwig" type="data" label="BigWig file to convert" />
15 <param name="bin_size" size="4" type="integer" value="500" label="Bin size" help="Choose the resolution (in bp) of your wig file. Must be an even integer > 100." /> 15 <param name="bin_size" size="4" type="integer" value="500" label="Bin size" help="Choose the resolution (in bp) of your wig file. Must be an even integer > 100." />
16 <param name="mylab" type="text" value="wiggle_file" label="Output file prefix" help="" /> 16 <param name="mylab" type="text" value="wiggle_file" label="Output file prefix" help="" />
21 <tests> 21 <tests>
22 <test> 22 <test>
23 <param name="input" value="1.bigwig" /> 23 <param name="input" value="1.bigwig" />
24 <param name="bin_size" value="500" /> 24 <param name="bin_size" value="500" />
25 <param name="mylab" value="wiggle_file" /> 25 <param name="mylab" value="wiggle_file" />
26 <output name="output" file="1.wig" /> 26 <output name="output" file="1.wig" compare="sim_size" />
27 </test> 27 </test>
28 <test> 28 <test>
29 <param name="input" value="2.bigwig" /> 29 <param name="input" value="2.bigwig" />
30 <param name="bin_size" value="2000" /> 30 <param name="bin_size" value="2000" />
31 <param name="mylab" value="wiggle_file" /> 31 <param name="mylab" value="wiggle_file" />
32 <output name="output" file="2.wig" /> 32 <output name="output" file="2.wig" compare="sim_size" />
33 </test> 33 </test>
34 </tests> 34 </tests>
35 <help><![CDATA[ 35 <help><![CDATA[
36 36
37 @HELP_CONTENT@ 37 @HELP_CONTENT@