diff macros.xml @ 0:ee2fbee916f7 draft

planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/bigwig_to_wig commit 5baa8e0a6a2bf65e58972c19b636ff4789c25b56
author artbio
date Tue, 25 Sep 2018 17:41:20 -0400
parents
children ac8ea1ca115d
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/macros.xml	Tue Sep 25 17:41:20 2018 -0400
@@ -0,0 +1,47 @@
+<macros>
+    <token name="@VERSION@">2.0.0</token>
+    <macro name="requirements">
+    <requirements>
+        <requirement type="package" version="366">ucsc-bigwiginfo</requirement>
+        <requirement type="package" version="366">ucsc-bigwigsummary</requirement>
+        <requirement type="package" version="1.06">bc</requirement>
+    </requirements>
+    </macro>
+
+    <macro name="citation">
+        <citations>
+            <citation type="doi">10.1093/bioinformatics/btu056</citation>
+        </citations>
+    </macro>
+    <token name="@HELP_CONTENT@">
+.. class:: infomark
+
+**What it does**
+
+This tool converts a **BigWig** file to fixed step **Wiggle** format.
+
+Thus, a Wiggle file produced by this tool reports values (real numbers) assigned to genomic intervals of fixed size.
+
+The bin size is the size of this interval in nucleotide (500 nt by default).
+
+The larger the bin size you choose, the lower resolution and the faster the conversion with the tool.
+
+    </token>
+
+    <token name="@TOOL_ATTRIBUTION@">
+.. class:: infomark
+
+**Credits**
+
+This tool is based on the script written by Jens Vilstrup Johansen and is an update of a Galaxy tool previously developed by nikos_.
+
+It uses bigWigInfo_ and bigWigSummary_.
+
+For support and bug reports contact Cedric Mendoza or Christophe Antoniewski or go to https://github.com/ARTbio/tools-artbio
+
+.. _nikos: https://toolshed.g2.bx.psu.edu/view/nikos/bigwig_to_wig/974af3268394
+.. _bigWigInfo: https://github.com/adamlabadorf/ucsc_tools/blob/master/executables/bigWigInfo
+.. _bigWigSummary: https://github.com/adamlabadorf/ucsc_tools/blob/master/executables/bigWigSummary
+
+    </token>
+</macros>