Mercurial > repos > artbio > bigwig_to_wig
diff macros.xml @ 0:ee2fbee916f7 draft
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/bigwig_to_wig commit 5baa8e0a6a2bf65e58972c19b636ff4789c25b56
author | artbio |
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date | Tue, 25 Sep 2018 17:41:20 -0400 |
parents | |
children | ac8ea1ca115d |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/macros.xml Tue Sep 25 17:41:20 2018 -0400 @@ -0,0 +1,47 @@ +<macros> + <token name="@VERSION@">2.0.0</token> + <macro name="requirements"> + <requirements> + <requirement type="package" version="366">ucsc-bigwiginfo</requirement> + <requirement type="package" version="366">ucsc-bigwigsummary</requirement> + <requirement type="package" version="1.06">bc</requirement> + </requirements> + </macro> + + <macro name="citation"> + <citations> + <citation type="doi">10.1093/bioinformatics/btu056</citation> + </citations> + </macro> + <token name="@HELP_CONTENT@"> +.. class:: infomark + +**What it does** + +This tool converts a **BigWig** file to fixed step **Wiggle** format. + +Thus, a Wiggle file produced by this tool reports values (real numbers) assigned to genomic intervals of fixed size. + +The bin size is the size of this interval in nucleotide (500 nt by default). + +The larger the bin size you choose, the lower resolution and the faster the conversion with the tool. + + </token> + + <token name="@TOOL_ATTRIBUTION@"> +.. class:: infomark + +**Credits** + +This tool is based on the script written by Jens Vilstrup Johansen and is an update of a Galaxy tool previously developed by nikos_. + +It uses bigWigInfo_ and bigWigSummary_. + +For support and bug reports contact Cedric Mendoza or Christophe Antoniewski or go to https://github.com/ARTbio/tools-artbio + +.. _nikos: https://toolshed.g2.bx.psu.edu/view/nikos/bigwig_to_wig/974af3268394 +.. _bigWigInfo: https://github.com/adamlabadorf/ucsc_tools/blob/master/executables/bigWigInfo +.. _bigWigSummary: https://github.com/adamlabadorf/ucsc_tools/blob/master/executables/bigWigSummary + + </token> +</macros>