Mercurial > repos > artbio > blast_unmatched
comparison blast_unmatched.xml @ 0:f3b63b59a1ea draft
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/blast_unmatched commit 5bd801feb838592fbb1f6dd68b5f1a480042da40
| author | artbio |
|---|---|
| date | Tue, 03 Oct 2017 07:19:17 -0400 |
| parents | |
| children | 50c1fa95a076 |
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| -1:000000000000 | 0:f3b63b59a1ea |
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| 1 <tool id="blast_unmatched" name="Blast Unmatched" version="0.1.0"> | |
| 2 <description>get query sequences that didn't get a match during a blast</description> | |
| 3 <requirements> | |
| 4 </requirements> | |
| 5 <command detect_errors="exit_code"><![CDATA[ | |
| 6 python '$__tool_directory__'/blast_unmatched.py | |
| 7 --fasta $fasta_file | |
| 8 --blast $blast_file | |
| 9 --output $output_file | |
| 10 ]]></command> | |
| 11 <inputs> | |
| 12 <param type="data" name="fasta_file" format="fasta"/> | |
| 13 <param type="data" name="blast_file" format="tabular"/> | |
| 14 </inputs> | |
| 15 <outputs> | |
| 16 <data name="output_file" format="fasta" label="Unmatched queries from blast: ${blast_file.name}"/> | |
| 17 </outputs> | |
| 18 <tests> | |
| 19 <test> | |
| 20 <param name="blast_file" value="test_blast.tab"/> | |
| 21 <param name="fasta_file" value="test_query.fa"/> | |
| 22 <output name="output_file" ftype="fasta" file="test_output.fa"/> | |
| 23 </test> | |
| 24 </tests> | |
| 25 <help><![CDATA[ | |
| 26 **What it does** | |
| 27 | |
| 28 This tool takes a `blast`_ output in tabular format(with the query id in 1rst column) and the fasta file used as query. It then return the query sequences that remained unmatched during the blast. | |
| 29 | |
| 30 .. _blast: https://blast.ncbi.nlm.nih.gov/Blast.cgi | |
| 31 | |
| 32 ]]></help> | |
| 33 <citations> | |
| 34 </citations> | |
| 35 </tool> |