# HG changeset patch
# User artbio
# Date 1507194661 14400
# Node ID dfcdac284538387114f682a9548680a1a5a944e2
# Parent  50c1fa95a07671b79fe93239ec9ccb7f06da4a63
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/blast_unmatched commit 830e10a94c2afc178f4078609842cd93808df1b4

diff -r 50c1fa95a076 -r dfcdac284538 blast_unmatched.py
--- a/blast_unmatched.py	Tue Oct 03 12:41:53 2017 -0400
+++ b/blast_unmatched.py	Thu Oct 05 05:11:01 2017 -0400
@@ -1,7 +1,7 @@
 #!/usr/bin/env python3
 
 import optparse
-
+import re
 
 def parse_options():
     """
@@ -36,10 +36,13 @@
     """
     output_file_handle = open(output_file, 'w')
     unmatched = False
+    end = re.compile(".+\W$")
     with open(fasta_file, 'r') as infile:
         for line in infile:
             if line.startswith('>'):
-                subline = line[1:100].rstrip() #qid are 100chars long in blast
+                subline = line[1:].rstrip() #qid are 100chars long in blast
+                while end.match(subline) != None:
+                    subline = subline[:-1]
                 if subline not in matched:
                     output_file_handle.write(line)
                     unmatched = True
diff -r 50c1fa95a076 -r dfcdac284538 blast_unmatched.xml
--- a/blast_unmatched.xml	Tue Oct 03 12:41:53 2017 -0400
+++ b/blast_unmatched.xml	Thu Oct 05 05:11:01 2017 -0400
@@ -1,4 +1,4 @@
-<tool id="blast_unmatched" name="Blast Unmatched" version="0.2.0">
+<tool id="blast_unmatched" name="Blast Unmatched" version="0.4.0">
     <description>get query sequences that didn't get a match during a blast</description>
     <requirements>
     </requirements>