Mercurial > repos > artbio > cap3
diff test-data/cap3stdout.txt @ 0:d76a0d8a9eac draft
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cap3 commit 9d6ba79f91bdf48dc01c09c088c63f5ea60d137a
| author | artbio |
|---|---|
| date | Sat, 02 Sep 2017 07:09:11 -0400 |
| parents | |
| children |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cap3stdout.txt Sat Sep 02 07:09:11 2017 -0400 @@ -0,0 +1,299 @@ +Number of segment pairs = 342; number of pairwise comparisons = 14 +'+' means given segment; '-' means reverse complement + +Overlaps Containments No. of Constraints Supporting Overlap + +******************* Contig 1 ******************** +gi|225356593|gb|FJ150422.1|_Drosophila_A_virus_iso+ + gi|225356593|gb|FJ150422.1|_Drosophila_A_virus_iso+ is in gi|225356593|gb|FJ150422.1|_Drosophila_A_virus_iso+ + gi|225356593|gb|FJ150422.1|_Drosophila_A_virus_iso+ is in gi|225356593|gb|FJ150422.1|_Drosophila_A_virus_iso+ +gi|225356593|gb|FJ150422.1|_Drosophila_A_virus_iso+ + gi|225356593|gb|FJ150422.1|_Drosophila_A_virus_iso+ is in gi|225356593|gb|FJ150422.1|_Drosophila_A_virus_iso+ + gi|225356593|gb|FJ150422.1|_Drosophila_A_virus_iso+ is in gi|225356593|gb|FJ150422.1|_Drosophila_A_virus_iso+ +gi|225356593|gb|FJ150422.1|_Drosophila_A_virus_iso+ +******************* Contig 2 ******************** +gi|225356593|gb|FJ150422.1|_Drosophila_A_virus_iso+ + gi|225356593|gb|FJ150422.1|_Drosophila_A_virus_iso+ is in gi|225356593|gb|FJ150422.1|_Drosophila_A_virus_iso+ +******************* Contig 3 ******************** +gi|225356593|gb|FJ150422.1|_Drosophila_A_virus_iso+ +gi|225356593|gb|FJ150422.1|_Drosophila_A_virus_iso+ +******************* Contig 4 ******************** +gi|225356593|gb|FJ150422.1|_Drosophila_A_virus_iso+ +gi|225356593|gb|FJ150422.1|_Drosophila_A_virus_iso+ + +DETAILED DISPLAY OF CONTIGS +******************* Contig 1 ******************** + . : . : . : . : . : . : +gi|225356593|gb|FJ15+ GTTGCATATTCAACCTGCCGAGCCCAGGAAGACTCAGGCGGGGGAGGCACTACATTAGGG +gi|225356593|gb|FJ15+ GTTGCATATTCAACCTGCCGAGCCCAGGAAGACTCAGGCGGGGGAGGCACTACATTAGGG +gi|225356593|gb|FJ15+ GTTGCATATTCAACCTGCCGAGCCCAGGAAGACTCAGGCGGGGGAGGCACTACATTAGGG + ____________________________________________________________ +consensus GTTGCATATTCAACCTGCCGAGCCCAGGAAGACTCAGGCGGGGGAGGCACTACATTAGGG + + . : . : . : . : . : . : +gi|225356593|gb|FJ15+ GTCGCAAAGCTAGACTTCTTGTATGGGATGTTGTTAACCTCCAAAATAGCTGCACAGATG +gi|225356593|gb|FJ15+ GTCGCAAAGCTAGACTTCTTGTATGGGATGTTGTTAACCTCCAAAATAGCTGCACAGATG +gi|225356593|gb|FJ15+ GTCGCAAAGCTAGACTTCTTGTATGGGATGTTGTTAACCTCCAAAATAGCTGCACAGATG + ____________________________________________________________ +consensus GTCGCAAAGCTAGACTTCTTGTATGGGATGTTGTTAACCTCCAAAATAGCTGCACAGATG + + . : . : . : . : . : . : +gi|225356593|gb|FJ15+ TATTCCTTAGCCAGTTTGGCAGAGGAAGACCAGGCTTCTCCCAACAGCTTCACATCCTGG +gi|225356593|gb|FJ15+ TATTCCTTAGCCAGTTTGGCAGAGGAAGACCAGGCTTCTCCCAACAGCTTCACATCCTGG +gi|225356593|gb|FJ15+ ACATCCTGG +gi|225356593|gb|FJ15+ TATTCCTTAGCCAGTTTGGCAGAGGAAGACCAGGCTTCTCCCAACAGCTTCACATCCTGG + ____________________________________________________________ +consensus TATTCCTTAGCCAGTTTGGCAGAGGAAGACCAGGCTTCTCCCAACAGCTTCACATCCTGG + + . : . : . : . : . : . : +gi|225356593|gb|FJ15+ GTATGGTGGCTGTGGGCGTAGAGCCTAACTCCAACAGGATTGGCAGCATTTGGCCGTACC +gi|225356593|gb|FJ15+ GTATGGTGGCTGTGGGC +gi|225356593|gb|FJ15+ GTATGGTGGCTGTGGGCGTAGAGCCTAACTCCAACAGGATTGGCAGCATTTGGCCGTACC +gi|225356593|gb|FJ15+ GTATGGTGGCTGTGGGCGTAGAGCCTAACTCCAACAGGATTGGCAGCATTTGGCCGTACC + ____________________________________________________________ +consensus GTATGGTGGCTGTGGGCGTAGAGCCTAACTCCAACAGGATTGGCAGCATTTGGCCGTACC + + . : . : . : . : . : . : +gi|225356593|gb|FJ15+ TCAGATATCCATTTAGTGAATCCTGAGAATCTCCCGCTGACCATTGCATGGACATATGCC +gi|225356593|gb|FJ15+ TCAGATATCCATTTAGTGAATCCTGAGAATCTCCCGCTGACCATTGCATGGACATATGCC +gi|225356593|gb|FJ15+ TCAGATATCCATTTAGTGAATCCTGAGAATCTCCCGCTGACCATTGCATGGACATATGCC + ____________________________________________________________ +consensus TCAGATATCCATTTAGTGAATCCTGAGAATCTCCCGCTGACCATTGCATGGACATATGCC + + . : . : . : . : . : . : +gi|225356593|gb|FJ15+ ATGGCATCCTCTGCTGTATTTATATCGTGGGGAGGTGGATGGAGGTTCGATACTCCTGCA +gi|225356593|gb|FJ15+ ATGGCATCCTCTGCTGTATTTATATCGTGGGGAGGTGGATGGAGGTTCGATACTCCTGCA +gi|225356593|gb|FJ15+ ATGGCATCCTCTGCTGTATTTATATCGTGGGGAGGTGGATGGAGGTTCGATACTCCTGCA +gi|225356593|gb|FJ15+ TACTCCTGCA + ____________________________________________________________ +consensus ATGGCATCCTCTGCTGTATTTATATCGTGGGGAGGTGGATGGAGGTTCGATACTCCTGCA + + . : . : . : . : . : . : +gi|225356593|gb|FJ15+ ACGTCCAGGTTAATGAGCTCAGGTTGGGTTTTTAC +gi|225356593|gb|FJ15+ ACGTCCAGGTTAATGAGCTCAGGTTGGGTTTTTAC +gi|225356593|gb|FJ15+ ACGTCCAGGTTAATGAGCTCAGGTTGGGTTTTTACAATCTCCCGTCTCAAAGCTGACGTT +gi|225356593|gb|FJ15+ TTAATGAGCTCAGGTTGGGTTTTTACAATCTCCCGTCTCAAAGCTGACGTT +gi|225356593|gb|FJ15+ ACGTCCAGATTAATGAGCTCAGGTTGGGTTTTTACAATCTCCCGTCTCAAAGCTGACGTT + ____________________________________________________________ +consensus ACGTCCAGGTTAATGAGCTCAGGTTGGGTTTTTACAATCTCCCGTCTCAAAGCTGACGTT + + . : . : . : . : . : . : +gi|225356593|gb|FJ15+ CTGGCTGCAGTAGTCTTATCAATCAGATTACGCTTTTCCTCCATTTCTTCTCTTTGACTG +gi|225356593|gb|FJ15+ CTGGCTGCAGTAGTCTTATCAATCAGATTACGCTTTTCCTCCATTTCTTCTCTTTGACTG +gi|225356593|gb|FJ15+ CTGGCTGCAGTAGTCTTATCAATCAGATTACGCTTTTCCTCCATTTCTTCTCTTTGACTG + ____________________________________________________________ +consensus CTGGCTGCAGTAGTCTTATCAATCAGATTACGCTTTTCCTCCATTTCTTCTCTTTGACTG + + . : . : . : . : . : . : +gi|225356593|gb|FJ15+ TCCTGCAATGTGGGGAAAGGAGTCACTAGTGGGTATAAGGAAATCAAGTCTCCAAGTTCA +gi|225356593|gb|FJ15+ TCCTGCAATGTGGGGAAAGGAGTCACTAGTGGGTATAAGGAAATCAAGTCTCCAAGTTCA +gi|225356593|gb|FJ15+ TCCTGCAATGTGGGGAAAGGAGTCACTAGTGGGTATAAGGAAATCAAGTCTCCAAGTTCA + ____________________________________________________________ +consensus TCCTGCAATGTGGGGAAAGGAGTCACTAGTGGGTATAAGGAAATCAAGTCTCCAAGTTCA + + . : . : . : . : . : . : +gi|225356593|gb|FJ15+ TCTCCAGTAGTGAAATAGCCCCCTTTAGCAGCACCCACAACAATTTGGTAGGCACTAGCT +gi|225356593|gb|FJ15+ TCTCCAGTAGTGAAATAGCCCCCTTTAGCAGCACCCACAACAATTTGGTAGGCACTAGCT +gi|225356593|gb|FJ15+ TCTCCAGTAGTGAAATAGCCCCCTTTAGCAGCACCCACAACAATTTGGTAGGCACTAGCT + ____________________________________________________________ +consensus TCTCCAGTAGTGAAATAGCCCCCTTTAGCAGCACCCACAACAATTTGGTAGGCACTAGCT + + . : . : . : . : . : . : +gi|225356593|gb|FJ15+ CCAACTTTATCGGCAACAGTACCAACCTGAGAAACACCTCCAACTGAGGTAAGCCATCTA +gi|225356593|gb|FJ15+ CCAACTTTATCGGCAACAGTACCAACCTGAGAAACACCTCCAACTGAGGTAAGCCATCTA +gi|225356593|gb|FJ15+ CCAACTTTATCGGCAACAGTACCAACCTGAGAAACACCTCCAACTGAGGTAAGCCATCTA + ____________________________________________________________ +consensus CCAACTTTATCGGCAACAGTACCAACCTGAGAAACACCTCCAACTGAGGTAAGCCATCTA + + . : . : . : . : . : . : +gi|225356593|gb|FJ15+ ACGACGGCTTGAGCCATATTTGGTAGGAATTTCTCAGGGATGTCACCACTTTCTGTGATC +gi|225356593|gb|FJ15+ ACGACGGCTTGAGCCATATTTGGTAGGAATTTCTCAGGGATGTCACCACTTTCTGTGATC +gi|225356593|gb|FJ15+ ACGACGGCTTGAGCCATATTTGGTAGGAATTTCTCAGGGATGTCACCACTTTCTGTGATC + ____________________________________________________________ +consensus ACGACGGCTTGAGCCATATTTGGTAGGAATTTCTCAGGGATGTCACCACTTTCTGTGATC + + . : . : . : . : . : . : +gi|225356593|gb|FJ15+ CGAACTACTTTGGGTCTGGGGTTCGGTTCTGAATACTGGACTTGCTGAGGTCTAAGAGCC +gi|225356593|gb|FJ15+ CGAACTACTTTGGGTCTGGGGTTCGGTTCTGAATACTGGACTTGCTGAGGT +gi|225356593|gb|FJ15+ CGAACTACTTTGGGTCTGGGGTTCGGTTCTGAATACTGGACTTGCTGAGGT +gi|225356593|gb|FJ15+ GTTCTGAATACTGGACTTGCTGAGGTCTAAGAGCC + ____________________________________________________________ +consensus CGAACTACTTTGGGTCTGGGGTTCGGTTCTGAATACTGGACTTGCTGAGGTCTAAGAGCC + + . : . : . : . : . : . : +gi|225356593|gb|FJ15+ TCAAACACTTTGTACTCATCATTCAGATTCGCCTCAGGAGGAGGAGGGCATCCTACAACC +gi|225356593|gb|FJ15+ TCAAACACTTTGTACTCATCATTCAGATTCGCCTCAGGAGGAGGAGGGCATCCTACAACC + ____________________________________________________________ +consensus TCAAACACTTTGTACTCATCATTCAGATTCGCCTCAGGAGGAGGAGGGCATCCTACAACC + + . : . : . : . : . : . : +gi|225356593|gb|FJ15+ TCCTTGACATCATAGTCGTTGGATTGGACTGTCAAATTTATCTGCCTCACAGCCACTCTC +gi|225356593|gb|FJ15+ TCCTTGACATCATAGTCGTTGGATTGGACTGTCAAATTTATCTGCCTCACAGCCACTCTC + ____________________________________________________________ +consensus TCCTTGACATCATAGTCGTTGGATTGGACTGTCAAATTTATCTGCCTCACAGCCACTCTC + + . : . : . : . : . : . : +gi|225356593|gb|FJ15+ TGCTCCCTCTTAAACTCGTCCAGGAATCCTGACAATGTGGGGAACAGATTAATCCATCCC +gi|225356593|gb|FJ15+ TGCTCCCTCTTAAACTCGTCCAGGAATCCTGACAATGTGGGGAACAGATTAATCCATCCC + ____________________________________________________________ +consensus TGCTCCCTCTTAAACTCGTCCAGGAATCCTGACAATGTGGGGAACAGATTAATCCATCCC + + . : . : . : . : . : . : +gi|225356593|gb|FJ15+ GCTTTGTCATCCTCTCCATCTGAATAGAGGTCTAGACAGAAGTCCCGAGAGGGGAATCCT +gi|225356593|gb|FJ15+ GCTTTGTCATCCTCTCCATCTGAATAGAGGTCTAGACAGAAGTCCCGAGAGGGGAATCCT + ____________________________________________________________ +consensus GCTTTGTCATCCTCTCCATCTGAATAGAGGTCTAGACAGAAGTCCCGAGAGGGGAATCCT + + . : . : . : . : . : . : +gi|225356593|gb|FJ15+ GACGAATCTGGATATTCAAAGTCCTGGAGGGTTATATGTTCTGGCTTCGTTCCGGTTTGC +gi|225356593|gb|FJ15+ GACGAATCTGGATATTCAAAGTCCTGGAGGGTTATATGTTCTGGCTTCGTTCCGGTTTGC + ____________________________________________________________ +consensus GACGAATCTGGATATTCAAAGTCCTGGAGGGTTATATGTTCTGGCTTCGTTCCGGTTTGC + + . : . : . : . : . : . : +gi|225356593|gb|FJ15+ TCTTGCGTTTGCATGACAATAATCTCGCCGGGGATTGTGTTAACCACAGCGTGTATTGTC +gi|225356593|gb|FJ15+ TCTTGCGTTTGCATGACAATAATCTCGCCGGGGATTGTGTTAACCACAGCGTGTATTGTC + ____________________________________________________________ +consensus TCTTGCGTTTGCATGACAATAATCTCGCCGGGGATTGTGTTAACCACAGCGTGTATTGTC + + . : . : . : . : . : . : +gi|225356593|gb|FJ15+ TCTTCGATCCGAGGTATGCTGAATCCCATTGTTATCATTAAACCCCTCATACGGTCATAC +gi|225356593|gb|FJ15+ TCTTCGATCCGAGGTATGCTGAATCCCATTGTTATCATTAAACCCCTCATACGGTCATAC + ____________________________________________________________ +consensus TCTTCGATCCGAGGTATGCTGAATCCCATTGTTATCATTAAACCCCTCATACGGTCATAC + + . : . : . : . : . : . : +gi|225356593|gb|FJ15+ AGAGTTCTTTGGCGTGCCGTTCTAGATACTGCCTTTTCAAAGGGATTATCCTTCTGGCAG +gi|225356593|gb|FJ15+ AGAGTTCTTTGGCGTGCCGTTCTAGATACTGCCTTTTCAAAGGGATTATCCTTCTGGCAG + ____________________________________________________________ +consensus AGAGTTCTTTGGCGTGCCGTTCTAGATACTGCCTTTTCAAAGGGATTATCCTTCTGGCAG + + . : . : . : . : . : . : +gi|225356593|gb|FJ15+ AGCATCATCTCAAGAGCATCGCTCTCAGGCATTGTGGGGACATGTATCACACGGTGTCTG +gi|225356593|gb|FJ15+ AGCATCATCTCAAGAGCATCGCTCTCAGGCATTGTGGGGACATGTATCACACGGTGTCTG + ____________________________________________________________ +consensus AGCATCATCTCAAGAGCATCGCTCTCAGGCATTGTGGGGACATGTATCACACGGTGTCTG + + . : . : . : . : . : . : +gi|225356593|gb|FJ15+ TGGTACACTCCCATAATTTGTACGCCAAGAAATTTGTGGTCCGTAATTAGAC +gi|225356593|gb|FJ15+ TGGTACACTCCCATAATTTGTACGCCAAGAAATTTGTGGTCCGTAATTAGAC + ____________________________________________________________ +consensus TGGTACACTCCCATAATTTGTACGCCAAGAAATTTGTGGTCCGTAATTAGAC + +******************* Contig 2 ******************** + . : . : . : . : . : . : +gi|225356593|gb|FJ15+ TGGATTTTCATCCATTGCTGGAGGGCTTACTAGGATGGTCGACTGGATGTATGCCTGCCC +gi|225356593|gb|FJ15+ TGGATTTTCATCCATTGCTGGAGGGCTTACTAGGATGGTCGACTGGATGTATGCCTGCCC + ____________________________________________________________ +consensus TGGATTTTCATCCATTGCTGGAGGGCTTACTAGGATGGTCGACTGGATGTATGCCTGCCC + + . : . : . : . : . : . : +gi|225356593|gb|FJ15+ AAAGCGGCGGGGACGGGTTGTCTGTTACGGTGACGATGCATGTATAACATTTTGGAGCCA +gi|225356593|gb|FJ15+ AAAGCGGCGGGGACGGGTTGTCTGTTACGGTGACGATGCATGTATAACATTTTGGAGCCA + ____________________________________________________________ +consensus AAAGCGGCGGGGACGGGTTGTCTGTTACGGTGACGATGCATGTATAACATTTTGGAGCCA + + . : . : . : . : . : . : +gi|225356593|gb|FJ15+ GGGCGTCCTCTATCGGGTGGATCCAGATTTTAAACAAATGGACGGGTCCATAGATAGAGA +gi|225356593|gb|FJ15+ GGGCGTCCTCTATCGGGTGGATCCAGATTTTAAACAAATGGACGGGTCCATAGATAGAGA + ____________________________________________________________ +consensus GGGCGTCCTCTATCGGGTGGATCCAGATTTTAAACAAATGGACGGGTCCATAGATAGAGA + + . : . : . : . : . : . : +gi|225356593|gb|FJ15+ GGATGCAAGAATCACCATTGAGTGGGTCCTCCACCATCTCAGAAAGGATTTAGGTGTAGA +gi|225356593|gb|FJ15+ GGATGCAAGAATCACCATTGAGTGGGTCCTCCACCATCTCAGAAAGGATTTAGGTGTAGA + ____________________________________________________________ +consensus GGATGCAAGAATCACCATTGAGTGGGTCCTCCACCATCTCAGAAAGGATTTAGGTGTAGA + + . : . : . : . : . : . : +gi|225356593|gb|FJ15+ GGAGACCCCTGCTTTTTGGAAGACAGTTGCAGCAGTGTGGCTTGATATGGCCATTGACCC +gi|225356593|gb|FJ15+ GGAGACCCCTGCTTTTTGGAAGACAGTTGCAGCAGTGTGGCTTGATATGGCCATTGACCC + ____________________________________________________________ +consensus GGAGACCCCTGCTTTTTGGAAGACAGTTGCAGCAGTGTGGCTTGATATGGCCATTGACCC + + . : . : . : . : . : . : +gi|225356593|gb|FJ15+ CCACTTTATCGTGGATGGTAAAACTGTTTACAAGAAGAAGAACCCCCATGGACTCATGAC +gi|225356593|gb|FJ15+ CCACTTTATCGTGGATGGTAAAACTGTTTACAAGAAGAAGAACCCCCATGGACTCATGAC + ____________________________________________________________ +consensus CCACTTTATCGTGGATGGTAAAACTGTTTACAAGAAGAAGAACCCCCATGGACTCATGAC + + . : . : . : . : . : . : +gi|225356593|gb|FJ15+ TGGAGTTCCAGGAACAACCCTATTTGACACTGTGAAATCTGTAATAGTCTGGAATGAAAT +gi|225356593|gb|FJ15+ TGGAGTTCCAGGAACAACCCTATTTGACACTGTGAAATCTGTAATAGTCTGGAATGAAAT + ____________________________________________________________ +consensus TGGAGTTCCAGGAACAACCCTATTTGACACTGTGAAATCTGTAATAGTCTGGAATGAAAT + + . : . : . : . : . : . : +gi|225356593|gb|FJ15+ GTTGGATCAGGCTGGTGCAGGTTCCATAGACCTTTTAAATGAAGCTCAAGTAGTTGAATG +gi|225356593|gb|FJ15+ GTTGGATCAGGCTGGTGCAGGTTCCATAGACCTTTTAAATGAAGCTCAAGTAGTTGAATG + ____________________________________________________________ +consensus GTTGGATCAGGCTGGTGCAGGTTCCATAGACCTTTTAAATGAAGCTCAAGTAGTTGAATG + + . : . : . : . : . : . : +gi|225356593|gb|FJ15+ GATGAAGAGACAAGGCTTGGTTGTCAAAGAGGGAA +gi|225356593|gb|FJ15+ GATGAAGAGACAAGGCTTAGTTGTCA + ____________________________________________________________ +consensus GATGAAGAGACAAGGCTTAGTTGTCAAAGAGGGAA + +******************* Contig 3 ******************** + . : . : . : . : . : . : +gi|225356593|gb|FJ15+ AACGTAAAACAAACGACATGGATGCATCTAACCCTATTATTTCAAGCGATAGAAGCACTG +gi|225356593|gb|FJ15+ ATAGAAGCACTG + ____________________________________________________________ +consensus AACGTAAAACAAACGACATGGATGCATCTAACCCTATTATTTCAAGCGATAGAAGCACTG + + . : . : . : . : . : . : +gi|225356593|gb|FJ15+ TGAATCAGGTTTATGCGAAGATGGTGAGGAGAAAACGGCAAGATCTTGCCTATCTCCAGG +gi|225356593|gb|FJ15+ TGAATCAGGTTTACGCGAAGATGGTGAGGAGAAAACGGCAAGATCTTGCCTATCTCCAGG + ____________________________________________________________ +consensus TGAATCAGGTTTACGCGAAGATGGTGAGGAGAAAACGGCAAGATCTTGCCTATCTCCAGG + + . : . : . : . : . : . : +gi|225356593|gb|FJ15+ AGTTGGTGAGGACAGCCCATCGAGAGATTCTCCCCCAAGGAGAACTTCTCCATGAGTCGG +gi|225356593|gb|FJ15+ AGTTGGTGAGGACAGCCCATCGAGAGATTCTCCCCCAAGGAGAACTTCTCCATGAGTCGG + ____________________________________________________________ +consensus AGTTGGTGAGGACAGCCCATCGAGAGATTCTCCCCCAAGGAGAACTTCTCCATGAGTCGG + + . : . : . : . : . : . : +gi|225356593|gb|FJ15+ AAGCCAAACAGTATGTAGCCGAATATAAGGCTCGACTACCTGTGGTTGACACTAAGAAAG +gi|225356593|gb|FJ15+ AAGCCAAACAGTATGTAGCCGAATATAAGGCTCGACTACCTGTGGTTGACACTAAGAAAG + ____________________________________________________________ +consensus AAGCCAAACAGTATGTAGCCGAATATAAGGCTCGACTACCTGTGGTTGACACTAAGAAAG + + . : . : . : . : . : . : +gi|225356593|gb|FJ15+ TTGGCGAACTGCCAACTGAGGTCTTCCAGGTAGCACTCCCAAGT +gi|225356593|gb|FJ15+ TTGGCGAACTGCCAACTGAGGTCTTCCAGGTAGCACTCCCAAGT + ____________________________________________________________ +consensus TTGGCGAACTGCCAACTGAGGTCTTCCAGGTAGCACTCCCAAGT + +******************* Contig 4 ******************** + . : . : . : . : . : . : +gi|225356593|gb|FJ15+ TACGGTGCCCCTAAGAGAATCGAACTCAAACTCTCCAGTTGTGTAGTAACCAGAGAGCCA +gi|225356593|gb|FJ15+ GGTGCCCCTAAGAGAATCGAACTCAAACTCTCCAGTTGTGTAGTAACCAGAGAGCCA + ____________________________________________________________ +consensus TACGGTGCCCCTAAGAGAATCGAACTCAAACTCTCCAGTTGTGTAGTAACCAGAGAGCCA + + . : . : . : . : . : . : +gi|225356593|gb|FJ15+ CCGAGGAGGGACGGGGTGGTGATTATGAAAAGATGATGGGTTTTGGGGAGAGGTTATACA +gi|225356593|gb|FJ15+ CCGAGGAGGGACGGGGTGGTGATTATGAAAAGATGATGGGTTTTGGGGAGAGGTTATACA + ____________________________________________________________ +consensus CCGAGGAGGGACGGGGTGGTGATTATGAAAAGATGATGGGTTTTGGGGAGAGGTTATACA + + . : . : . : . : . : . : +gi|225356593|gb|FJ15+ ATTTCAAAATCTTGAACGGCCACTGGGTCTTCAGATATCACTTTGAAAGGACTGAGTGTC +gi|225356593|gb|FJ15+ ATTTCAAAATCTTGAACGGCCACTGGGTCTTCAGATATCACTTTGAAAGGACTGAGTGTC + ____________________________________________________________ +consensus ATTTCAAAATCTTGAACGGCCACTGGGTCTTCAGATATCACTTTGAAAGGACTGAGTGTC + + . : . : . : . : . : . : +gi|225356593|gb|FJ15+ GTTCCATCAGGCATACCCTCAAGTTTGGTCCTAATCTTAGCTGTGTCCTTGCTGAGAGCA +gi|225356593|gb|FJ15+ GTTCCATCAGGCATACCCTCAAGTTTGGTCCTAATCTTAGCTGTGTCCTTGCTGAGAGCA + ____________________________________________________________ +consensus GTTCCATCAGGCATACCCTCAAGTTTGGTCCTAATCTTAGCTGTGTCCTTGCTGAGAGCA + + . : . : . : . : . : . : +gi|225356593|gb|FJ15+ ACAGTTCTTGTTA +gi|225356593|gb|FJ15+ ACAGTTCTTGTTA + ____________________________________________________________ +consensus ACAGTTCTTGTTA +