Mercurial > repos > artbio > cherry_pick_fasta

diff test-data/output.fa @ 3:c282a8a47dd9 draft

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"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit d637de6c1090314bd34bdffc2fdf979cb55b870b"
author artbio
date Fri, 21 May 2021 09:34:14 +0000
parents e3aee4ba49c6
children
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--- a/test-data/output.fa	Tue Mar 16 23:25:57 2021 +0000
+++ b/test-data/output.fa	Fri May 21 09:34:14 2021 +0000
@@ -1,27 +1,29 @@
->gi|81971654|sp|Q9IJX4.1|POLN_CRPVC_RecName:_Full_Replicase_polyprotein;_Contains:_RecName:_Full_Pro--Locus_65_Transcript_1/2_Confidence_0.667_Length_1344_hit1_IdMatch=43.46,AligLength=451,E-val=2e-122
-TAGATAAGGTTTGCTCATTTCTTGAGGATGCTTTACCAGGTATGGTCGAGCACGTTACGC
-TCGTAGCACAAAATACATCCGCGTCAGCCAAGGTGTTATCTGACGAGTTGATCAAATCAA
-TGCTTTGCATTGTTTTGATTTGCTTGTTGATTGAAACCAAGTTCTATAAGACCGCTTTCG
-CGGTACTTATAGTGGTTGCTCTACGTGTTTTCGGGTACAGTGAGCAAATAATTGAGACAG
-CTATGGACATGTATCGCGTAATTAGGGCTCCAAAGGCTCAAGGTAATATGGAAGATGTCG
-TTTTCCATCCGTGGTTGAACACGTGTGGAAAGTTGATTTTCCTACTTATCGCTGTCCTGT
-GTCTCAAGAAATTACCAGGAAAGAACGACGTAGACACTTTCATGCGCAGGCTCGACAGCT
-TACCCAAAGCTGTTAAGGGTGCGACACAACTACATGAATGGGTGTCAAAATACTTCGATC
-TCTCTTTGGATCACGTCAAGGCGATGATTGTTGGTAAATCTTGTGCCGAAATGAAGAAGG
-CTGAATCATCAAGCGCCAAAGTTTTGGCTTGGGCCGCTAGAGTTCAAGATTTCGTCAGAT
-TGGAACAACGAAGTAAAATCGATAGTGATATCGCTGTCGCCAACGAGGCTGAAGCCTTGT
-ATCACACTGGATTGCAATTTGCAGGAGACACTCTGTTACCTCCAGAATTGCACAAGGTCG
-TGAACAGTGCGCTAAGACCAGCCCGCGATATATATGAGTACGTCACCCGCTCCCCAATAA
-AAGGAGGGAGTCGTAAGATGAGACCCTTGATGATTTGGCTAGCTGGCCAGTCAGGAATTG
-GGAAAACCTCTATGGTGGATCCTCTATGTATCGATTTGCTTCGAGCAATGGGTTATGTGG
-GACCTGAACATCTCCACTCGTTGGTGTATGGCCGCCAAGTTGAGACGGAGTACTGGGATG
-GTTACAAAGCCCACAAGATAGTGATCTATGATGATGCTTTTCAGCTGAAAGATGATGCTG
-TGAACAGGAATTTGGAGGTATTTGAGGTTATACGTTCTTGCAACACGTATCCTCAACACC
-TTCATATGGCTTGTCTCTCGGATAAAAACACTTTTTCAGTAGCGGAAGTGTACATCTACA
-CTACCAACGAAATGAATGTCAAACTTGAGTCGCTGACTCATGAACAAGCATTCTACAACC
-GCATGAGTGAAAACGCGTTCACTGTGCGTCCAAAAGAGGCTTATCGTCTAGTCGAAGAAG
-GATCAACCGGCAATAAGCAGTATCGTTTGGACAAAACGAAAACCAAAGGAGCTATCGATC
-TCGATGTGTACGAATTCGTGCGC
+>gi|81971654|sp|Q9IJX4.1|POLN_CRPVC_RecName:_Full_Replicase_polyprotein;_Contains:_RecName:_Full_Pro--Locus_50_Transcript_1/1_Confidence_0.000_Length_1442_hit1_IdMatch=24.95,AligLength=537,E-val=8e-47
+GAATTCGTGCGCATGCAAAGAATAAATGACCACCCTTCGGGTTGGAAAGCTACGGATGAA
+GTATATGGCTATGCAGAGTTCTCGAAACTAATGTGTGCTGAATGGAAGAGAAGGAAGACA
+GAACATCAGAATACTGTTGACTTCCTTAAGAAGTATGCAGAGCGACCCTTCGAGACCAAC
+CCCGGACCAGTGGAGGATATCCCAATAAGACACGATGATGTCGAGCAGGGGGTAGAAGCG
+CAGATGGGTCGAGATGCAGATTGGTTTAACAATGACATAGCGGAACGTATAGCGCGTGGA
+CAGGATATTACTGATATCTTGTATGAGTATGCTGAAGATGACGAGTTGCATGAGGATTAC
+ATGGCTTACAAGAAACAGCAGGCCCAGCCTAGTAAGTGGGACAAATACGCGCGCCGTCTC
+GAAAGTGCAATTACGGAAGGAAAGAATTTCCTTGCCCGTGTGGTTTCAAAAATAGCCAGC
+GTCATTCGGGAGAACCCATATTTGACCATGATGGCAACTGTGGGGAGCGTTCTCGCTCTG
+TATGGAGCTATGCGTTGGTTTTCGAAAGGAGTAACGGAGACTTTTGACGCTGAAGAAGTT
+ACTATTCCCAACGAAACCAAGGTAGAGAACGTTGTGCGTACGGAGGGTTTTGAATCTTAC
+GACCATCGGACTCCGCGCGCTCATCGAGCCAACAGGCAATATGTGCGAGCTGAGGCGATG
+ATAGATGAAACAGGGTACCTGGTAGCCAACAACAAAGTCACTGGCAACACGTATCGAATG
+TGTATCAAGAGGGATCCTGATGATTTGGTCGTTGGAAACGCTGTGTTTATCACAGGGTGG
+ACGCTCCTCATACCGTACCACTTCGTTTGTGGACTGGCGGGACGGAGAATAGCTGCTGAT
+TCCATCGTGACTTTGTCAAAGCCAGGCTTGGATAAGATTATTGAATTCCCGTTGTCACGA
+ATCTTCCGATACGATACCTCACCAGATGGTTTTACCACTAGTGAGTATTGTGCTCGAATG
+GAACATGAAGATGGAGAATTGGTTGATGCCATCCTGGTAAACCTGCATGGTTTGGGAGTG
+CGAATCCATCCTGACCTCCGGGGAAAAATTGTGACGGTACGAGACCAAGCGCACCTGAGT
+ACGACATTTCATGCGATTCTCACAACGATGTCCAGGAAGCCACCACTAACAACGTCACAA
+CAAGTGGTAAAAGGGGTCAAGCCAATGGATAAAATCCTGCACATCAATTTACCAGTTGGG
+GACAAAACAACGCAATACACCCAACGTGACTGTTACAAGTATTATTCCGTAACGGTCGTT
+GGAGATTGTGGTGCCTTGCTGGTAGCACAAAATCATGCAATTGTGAGGAAAATATTTGCA
+ATGCATATAGCAGGTGCGGAAGAAAATGGCTATGCTTGTCCAATCAATCAGGAAATGTTA
+G
 >gi|81971654|sp|Q9IJX4.1|POLN_CRPVC_RecName:_Full_Replicase_polyprotein;_Contains:_RecName:_Full_Pro--Locus_63_Transcript_1/2_Confidence_0.333_Length_1607_hit1_IdMatch=52.99,AligLength=536,E-val=0.0
 CTAGAATCACAGCTCAGATGAGTTTTGAGGCACCGAAGGACGCAATTGAAGGACCGTGTC
 AAACCCCGGAAGGATTGTTCGCCCCTATTGGCAAAGCGCCGATAGGCGTAGGGATGTCCA
@@ -50,32 +52,6 @@
 ACCCAGATGATGTGACGATGATGATCATTGATACAGCATTTAGGGAGATCTCTTATCACG
 GAAGGGAAGCTTTCGAGAAGCTGCGAGGGCAGATACTTGAGCAGCGGGATGTGTTGGTTG
 AATATCCTCAA
->gi|81971654|sp|Q9IJX4.1|POLN_CRPVC_RecName:_Full_Replicase_polyprotein;_Contains:_RecName:_Full_Pro--Locus_50_Transcript_1/1_Confidence_0.000_Length_1442_hit1_IdMatch=24.95,AligLength=537,E-val=8e-47
-GAATTCGTGCGCATGCAAAGAATAAATGACCACCCTTCGGGTTGGAAAGCTACGGATGAA
-GTATATGGCTATGCAGAGTTCTCGAAACTAATGTGTGCTGAATGGAAGAGAAGGAAGACA
-GAACATCAGAATACTGTTGACTTCCTTAAGAAGTATGCAGAGCGACCCTTCGAGACCAAC
-CCCGGACCAGTGGAGGATATCCCAATAAGACACGATGATGTCGAGCAGGGGGTAGAAGCG
-CAGATGGGTCGAGATGCAGATTGGTTTAACAATGACATAGCGGAACGTATAGCGCGTGGA
-CAGGATATTACTGATATCTTGTATGAGTATGCTGAAGATGACGAGTTGCATGAGGATTAC
-ATGGCTTACAAGAAACAGCAGGCCCAGCCTAGTAAGTGGGACAAATACGCGCGCCGTCTC
-GAAAGTGCAATTACGGAAGGAAAGAATTTCCTTGCCCGTGTGGTTTCAAAAATAGCCAGC
-GTCATTCGGGAGAACCCATATTTGACCATGATGGCAACTGTGGGGAGCGTTCTCGCTCTG
-TATGGAGCTATGCGTTGGTTTTCGAAAGGAGTAACGGAGACTTTTGACGCTGAAGAAGTT
-ACTATTCCCAACGAAACCAAGGTAGAGAACGTTGTGCGTACGGAGGGTTTTGAATCTTAC
-GACCATCGGACTCCGCGCGCTCATCGAGCCAACAGGCAATATGTGCGAGCTGAGGCGATG
-ATAGATGAAACAGGGTACCTGGTAGCCAACAACAAAGTCACTGGCAACACGTATCGAATG
-TGTATCAAGAGGGATCCTGATGATTTGGTCGTTGGAAACGCTGTGTTTATCACAGGGTGG
-ACGCTCCTCATACCGTACCACTTCGTTTGTGGACTGGCGGGACGGAGAATAGCTGCTGAT
-TCCATCGTGACTTTGTCAAAGCCAGGCTTGGATAAGATTATTGAATTCCCGTTGTCACGA
-ATCTTCCGATACGATACCTCACCAGATGGTTTTACCACTAGTGAGTATTGTGCTCGAATG
-GAACATGAAGATGGAGAATTGGTTGATGCCATCCTGGTAAACCTGCATGGTTTGGGAGTG
-CGAATCCATCCTGACCTCCGGGGAAAAATTGTGACGGTACGAGACCAAGCGCACCTGAGT
-ACGACATTTCATGCGATTCTCACAACGATGTCCAGGAAGCCACCACTAACAACGTCACAA
-CAAGTGGTAAAAGGGGTCAAGCCAATGGATAAAATCCTGCACATCAATTTACCAGTTGGG
-GACAAAACAACGCAATACACCCAACGTGACTGTTACAAGTATTATTCCGTAACGGTCGTT
-GGAGATTGTGGTGCCTTGCTGGTAGCACAAAATCATGCAATTGTGAGGAAAATATTTGCA
-ATGCATATAGCAGGTGCGGAAGAAAATGGCTATGCTTGTCCAATCAATCAGGAAATGTTA
-G
 >gi|81971654|sp|Q9IJX4.1|POLN_CRPVC_RecName:_Full_Replicase_polyprotein;_Contains:_RecName:_Full_Pro--Locus_63_Transcript_2/2_Confidence_0.333_Length_343_hit1_IdMatch=50.86,AligLength=116,E-val=6e-30
 ACACAGTCCACAGTCCGAAGACCAAAGCGTTGGATAGGACACGAATACACAGATGAAACG
 AAAACAGGCGAGGCTGCGCCCTATCGGACATTGGAAGAAGTCCGTTTCCTTAAAAGAGGG
@@ -83,6 +59,30 @@
 GAAATGCTTAATTGGACGCGCAAAGGGATTAACCCAGATGATGTGACGATGATGATCATT
 GATACAGCATTTAGGGAGATCTCTTATCACGGAAGGGAAGCTTTCGAGAAGCTGCGAGGG
 CAGATACTTGAGCAGCGGGATGTGTTGGTTGAATATCCTCAA
+>gi|81971654|sp|Q9IJX4.1|POLN_CRPVC_RecName:_Full_Replicase_polyprotein;_Contains:_RecName:_Full_Pro--Locus_65_Transcript_1/2_Confidence_0.667_Length_1344_hit1_IdMatch=43.46,AligLength=451,E-val=2e-122
+TAGATAAGGTTTGCTCATTTCTTGAGGATGCTTTACCAGGTATGGTCGAGCACGTTACGC
+TCGTAGCACAAAATACATCCGCGTCAGCCAAGGTGTTATCTGACGAGTTGATCAAATCAA
+TGCTTTGCATTGTTTTGATTTGCTTGTTGATTGAAACCAAGTTCTATAAGACCGCTTTCG
+CGGTACTTATAGTGGTTGCTCTACGTGTTTTCGGGTACAGTGAGCAAATAATTGAGACAG
+CTATGGACATGTATCGCGTAATTAGGGCTCCAAAGGCTCAAGGTAATATGGAAGATGTCG
+TTTTCCATCCGTGGTTGAACACGTGTGGAAAGTTGATTTTCCTACTTATCGCTGTCCTGT
+GTCTCAAGAAATTACCAGGAAAGAACGACGTAGACACTTTCATGCGCAGGCTCGACAGCT
+TACCCAAAGCTGTTAAGGGTGCGACACAACTACATGAATGGGTGTCAAAATACTTCGATC
+TCTCTTTGGATCACGTCAAGGCGATGATTGTTGGTAAATCTTGTGCCGAAATGAAGAAGG
+CTGAATCATCAAGCGCCAAAGTTTTGGCTTGGGCCGCTAGAGTTCAAGATTTCGTCAGAT
+TGGAACAACGAAGTAAAATCGATAGTGATATCGCTGTCGCCAACGAGGCTGAAGCCTTGT
+ATCACACTGGATTGCAATTTGCAGGAGACACTCTGTTACCTCCAGAATTGCACAAGGTCG
+TGAACAGTGCGCTAAGACCAGCCCGCGATATATATGAGTACGTCACCCGCTCCCCAATAA
+AAGGAGGGAGTCGTAAGATGAGACCCTTGATGATTTGGCTAGCTGGCCAGTCAGGAATTG
+GGAAAACCTCTATGGTGGATCCTCTATGTATCGATTTGCTTCGAGCAATGGGTTATGTGG
+GACCTGAACATCTCCACTCGTTGGTGTATGGCCGCCAAGTTGAGACGGAGTACTGGGATG
+GTTACAAAGCCCACAAGATAGTGATCTATGATGATGCTTTTCAGCTGAAAGATGATGCTG
+TGAACAGGAATTTGGAGGTATTTGAGGTTATACGTTCTTGCAACACGTATCCTCAACACC
+TTCATATGGCTTGTCTCTCGGATAAAAACACTTTTTCAGTAGCGGAAGTGTACATCTACA
+CTACCAACGAAATGAATGTCAAACTTGAGTCGCTGACTCATGAACAAGCATTCTACAACC
+GCATGAGTGAAAACGCGTTCACTGTGCGTCCAAAAGAGGCTTATCGTCTAGTCGAAGAAG
+GATCAACCGGCAATAAGCAGTATCGTTTGGACAAAACGAAAACCAAAGGAGCTATCGATC
+TCGATGTGTACGAATTCGTGCGC
 >gi|81971654|sp|Q9IJX4.1|POLN_CRPVC_RecName:_Full_Replicase_polyprotein;_Contains:_RecName:_Full_Pro--Locus_65_Transcript_2/2_Confidence_0.333_Length_1324_hit1_IdMatch=43.5,AligLength=446,E-val=1e-119
 CTTGAGGATACTTTACCAGGTATGGTCGAGCACGTTACGCTCGTAGCACAAAATACATCC
 GCGTCAGCCAAGGTGTTATCTGACGAGTTGATCAAATCAATGCTTTGCATTGTTTTGATT