Mercurial > repos > artbio > cnv_facets
diff macros.xml @ 0:3a185b812f46 draft
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/main/tools/facets commit 3c440a9075507e077fc8c82244d0313cb6478a01
| author | artbio |
|---|---|
| date | Wed, 01 Oct 2025 01:39:32 +0000 |
| parents | |
| children | 8e1fb7253c1d |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/macros.xml Wed Oct 01 01:39:32 2025 +0000 @@ -0,0 +1,37 @@ +<macros> + <token name="@pipefail@"><![CDATA[set -o | grep -q pipefail && set -o pipefail;]]></token> + <token name="@TOOL_VERSION@">0.6.2</token> + <token name="@VERSION_SUFFIX@">0</token> + <token name="@PROFILE@">23.0</token> + <xml name="requirements"> + <requirements> + <requirement type="package" version="0.6.2">snp-pileup</requirement> + <requirement type="package" version="1.22">bcftools</requirement> + <requirement type="package" version="1.22.1">samtools</requirement> + <requirement type="package" version="1.22.1">htslib</requirement> + <requirement type="package" version="20250822">parallel</requirement> + </requirements> + </xml> <xml name="citations"> + <citations> + <citation type="bibtex"> + @article{shen2016facets, + title={FACETS: allele-specific copy number and clonal heterogeneity analysis tool for cancer sequencing data}, + author={Shen, Ronglai and Seshan, Venkatraman E}, + journal={Nucleic acids research}, + volume={44}, + number={12}, + pages={e131--e131}, + year={2016}, + publisher={Oxford University Press} + } + </citation> + </citations> + </xml> + + <xml name="stdio"> + <stdio> + <exit_code range="1:" level="fatal" description="Error during script execution." /> + </stdio> + </xml> + +</macros> \ No newline at end of file