Mercurial > repos > artbio > concatenate_multiple_datasets

comparison catWrapper.xml @ 9:5b1b635232ed draft default tip

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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/main/tools/concat_multi_datasets commit 1b75e5575ec4e5a086ee90da57a611e51af68870
author artbio
date Thu, 13 Jun 2024 17:09:33 +0000
parents 5b2cc63d7a21
children
comparison
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8:5b2cc63d7a21 9:5b1b635232ed
1 <tool id="cat_multi_datasets" name="Concatenate multiple datasets" version="1.4.2"> 1 <tool id="cat_multi_datasets" name="Concatenate multiple datasets" version="1.4.3">
2 <description>tail-to-head while specifying how</description> 2 <description>tail-to-head while specifying how</description>
3 <command><![CDATA[ 3 <command><![CDATA[
4 #if $headers == 0: 4 #if $headers == 0:
5 #set $concat_command = "cat" 5 #set $concat_command = "cat"
6 #else: 6 #else:
261 <filter>global_condition['input_type'] == 'singles'</filter> 261 <filter>global_condition['input_type'] == 'singles'</filter>
262 </data> 262 </data>
263 <data name="paired_out_file" label="${global_condition.inputs.element_identifier}" auto_format="true"> 263 <data name="paired_out_file" label="${global_condition.inputs.element_identifier}" auto_format="true">
264 <filter>global_condition['input_type'] == 'paired_collection' and global_condition['paired_cat_type'] == 'all'</filter> 264 <filter>global_condition['input_type'] == 'paired_collection' and global_condition['paired_cat_type'] == 'all'</filter>
265 </data> 265 </data>
266 <collection name="paired_output" type="paired" label="Concatenation by strtand"> 266 <collection name="paired_output" type="paired" label="Concatenation by strand">
267 <discover_datasets pattern="(?P&lt;name&gt;.*)\.listed\.(?P&lt;ext&gt;.*)\.listed" format="fastq" visible="false" directory="concatenated"/> 267 <discover_datasets pattern="(?P&lt;name&gt;.*)\.listed\.(?P&lt;ext&gt;.*)\.listed" format="fastq" visible="false" directory="concatenated"/>
268 <filter>global_condition['input_type'] == 'paired_collection' and global_condition['paired_cat_type'] == 'by_strand'</filter> 268 <filter>global_condition['input_type'] == 'paired_collection' and global_condition['paired_cat_type'] == 'by_strand'</filter>
269 </collection> 269 </collection>
270 <collection name="list_output" type="list" label="Concatenation by pairs"> 270 <collection name="list_output" type="list" label="Concatenation by pairs">
271 <discover_datasets pattern="(?P&lt;identifier_0&gt;.*)\.listed\.(?P&lt;ext&gt;.*)\.listed" format="fastq" visible="false" directory="concatenated"/> 271 <discover_datasets pattern="(?P&lt;identifier_0&gt;.*)\.listed\.(?P&lt;ext&gt;.*)\.listed" format="fastq" visible="false" directory="concatenated"/>