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comparison ez_histograms.xml @ 1:fbedb212982d draft

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planemo upload for repository https://github.com/artbio/tools-artbio/tree/main/tools/ez_histograms commit 5e25392164eca5585239b62c82b7f6ba326cda6e
author artbio
date Thu, 08 Feb 2024 02:15:11 +0000
parents bdf40b0924cb
children d375c9df9c34
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0:bdf40b0924cb 1:fbedb212982d
1 <tool id="ez_histograms" name="ez_histograms" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@"> 1 <tool id="ez_histograms" name="ez_histograms" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
2 <macros> 2 <macros>
3 <token name="@TOOL_VERSION@">3.4.4</token> 3 <token name="@TOOL_VERSION@">3.4.4</token>
4 <token name="@VERSION_SUFFIX@">0</token> 4 <token name="@VERSION_SUFFIX@">1</token>
5 <token name="@PROFILE@">23.0</token> 5 <token name="@PROFILE@">23.0</token>
6 </macros> 6 </macros>
7 <requirements> 7 <requirements>
8 <requirement type="package" version="3.4.4">r-ggplot2</requirement> 8 <requirement type="package" version="3.4.4">r-ggplot2</requirement>
9 <requirement type="package" version="1.4.4">r-reshape2</requirement> 9 <requirement type="package" version="1.4.4">r-reshape2</requirement>
10 <requirement type="package" version="1.1.4">r-dplyr</requirement> 10 <requirement type="package" version="1.1.4">r-dplyr</requirement>
11 <requirement type="package" version="1.3.0">r-scales</requirement> 11 <requirement type="package" version="1.3.0">r-scales</requirement>
12 <requirement type="package" version="1.4.6">r-vtable</requirement> 12 <requirement type="package" version="2.4.1">r-psych</requirement>
13 <requirement type="package" version="1.7.4">r-optparse</requirement> 13 <requirement type="package" version="1.7.4">r-optparse</requirement>
14 </requirements> 14 </requirements>
15 15
16 <stdio> 16 <stdio>
17 <exit_code range="1:" level="fatal" /> 17 <exit_code range="1:" level="fatal" />
106 <param name="plot_options_selector" value="density"/> 106 <param name="plot_options_selector" value="density"/>
107 <param name="xscale" value="log10"/> 107 <param name="xscale" value="log10"/>
108 <output name="pdf" file="single_headed_col.pdf"/> 108 <output name="pdf" file="single_headed_col.pdf"/>
109 <output name="summary" file="summary_6.tsv"/> 109 <output name="summary" file="summary_6.tsv"/>
110 </test> 110 </test>
111 <test expect_num_outputs="2">
112 <param name="file" value="misleading_ids.tsv"/>
113 <param name="plot_options_selector" value="density"/>
114 <param name="xscale" value="cartesian"/>
115 <output name="pdf" file="misleading_ids.pdf"/>
116 <output name="summary" file="summary_7.tsv"/>
117 </test>
111 </tests> 118 </tests>
112 <help><![CDATA[ 119 <help><![CDATA[
113 **What it does** 120 **What it does**
114 121
115 The tool generates faceted histograms or density plots using the ggplot2 functions 122 The tool generates faceted histograms or density plots using the ggplot2 functions
143 **Outputs** 150 **Outputs**
144 151
145 The ez_histograms Galaxy tool returns 152 The ez_histograms Galaxy tool returns
146 153
147 - A pdf file with plots faceted on three columns 154 - A pdf file with plots faceted on three columns
148 - A tsv file with statistics summary of the variables generated by the R package vtables 155 - A tsv file with statistics summary of the variables generated by the R package psych
149 156
150 ]]></help> 157 ]]></help>
151 <citations> 158 <citations>
152 <citation type="bibtex"> 159 <citation type="bibtex">
153 @BOOK{Wickham2016-ic, 160 @BOOK{Wickham2016-ic,