# HG changeset patch
# User artbio
# Date 1707335396 0
# Node ID bdf40b0924cbb9a1f32f0c598319ca52a27928d0

planemo upload for repository https://github.com/artbio/tools-artbio/tree/main/tools/ez_histograms commit 443759a746f78d67dc4ffcafdc6610d09d278846

diff -r 000000000000 -r bdf40b0924cb ez_histograms.R
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/ez_histograms.R	Wed Feb 07 19:49:56 2024 +0000
@@ -0,0 +1,169 @@
+library(ggplot2)
+library(reshape2)
+library(dplyr)
+library(scales)
+library(vtable)
+library(optparse)
+
+options(show.error.messages = FALSE,
+  error = function() {
+    cat(geterrmessage(), file = stderr())
+    q("no", 1, FALSE)
+  }
+)
+
+loc <- Sys.setlocale("LC_MESSAGES", "en_US.UTF-8")
+warnings()
+
+option_list <- list(
+  make_option(
+    c("-f", "--file"),
+    default = NA,
+    type = "character",
+    help = "Input file that contains count values to transform"
+  ),
+  make_option(
+    c("-d", "--profile"),
+    default = "count",
+    type = "character",
+    help = "Whether y-axis shows absolute counts or density: 'count' or 'density' [default : '%default' ]"
+  ),
+  make_option(
+    "--xscale",
+    default = "cartesian",
+    type = "character",
+    help = "Whether x-axis is 'cartesian', 'log2' or 'log10' [default : '%default' ]"
+  ),
+  make_option(
+    "--yscale",
+    default = "cartesian",
+    type = "character",
+    help = "Whether y-axis is 'cartesian', 'log2' or 'log10' [default : '%default' ]"
+  ),
+  make_option(
+    c("-p", "--pdf"),
+    default = "histograms.pdf",
+    type = "character",
+    help = "Output pdf file name [default : '%default' ]"
+  ),
+  make_option(
+    c("-s", "--summary"),
+    default = "summary.tsv",
+    type = "character",
+    help = "statistics summary file name [default : '%default' ]"
+  )
+)
+
+opt <- parse_args(OptionParser(option_list = option_list),
+                  args = commandArgs(trailingOnly = TRUE))
+
+plot_histograms <- function(mdata, profile = "count", xscale = "cartesian", yscale = "cartesian", bins = 30) {
+  if (profile == "count") {
+    # count histogram
+    p <- ggplot(mdata, aes(x = value, fill = variable, color = variable, y = after_stat(count)), show.legend = FALSE) +
+      geom_histogram(bins = bins) + theme(legend.position = "none")
+    if (xscale == "cartesian") {
+      if (yscale == "log2") {
+        p <- p + scale_y_continuous(trans = "log2", labels = trans_format("log2", math_format(2^.x)))
+      } else {
+        if (yscale == "log10") {
+          p <- p + scale_y_continuous(trans = "log10", labels = trans_format("log10", math_format(10^.x)))
+        }
+      }
+    }
+    if (xscale == "log2") {
+      p <- p + scale_x_continuous(trans = "log2", labels = trans_format("log2", math_format(2^.x)))
+      if (yscale == "log2") {
+        p <- p + scale_y_continuous(trans = "log2", labels = trans_format("log2", math_format(2^.x)))
+      } else {
+        if (yscale == "log10") {
+          p <- p + scale_y_continuous(trans = "log10", labels = trans_format("log10", math_format(10^.x)))
+        }
+      }
+    }
+    if (xscale == "log10") {
+      p <- p + scale_x_continuous(trans = "log10", labels = trans_format("log10", math_format(10^.x)))
+      if (yscale == "log2") {
+        p <- p + scale_y_continuous(trans = "log2", labels = trans_format("log2", math_format(2^.x)))
+      } else {
+        if (yscale == "log10") {
+          p <- p + scale_y_continuous(trans = "log10", labels = trans_format("log10", math_format(10^.x)))
+        }
+      }
+    }
+  }
+
+  if (profile == "density") {
+    # density histogram
+    p <- ggplot(mdata, aes(x = value, fill = variable, color = variable)) +
+      geom_density() + theme(legend.position = "none")
+    if (xscale == "log2") {
+      p <- p + scale_x_continuous(trans = "log2", labels = trans_format("log2", math_format(2^.x)))
+    }
+    if (xscale == "log10") {
+      p <- p + scale_x_continuous(trans = "log10", labels = trans_format("log10", math_format(10^.x)))
+    }
+  }
+  return(p)
+}
+
+test_header <- function(file) {
+  data <- read.delim(file = file, header = FALSE, row.names = 1, nrows = 2)
+  if (all(is.na(as.numeric(data[1, seq_len(ncol(data))])))) {
+    return(TRUE)
+  } else {
+    return(FALSE)
+  }
+}
+
+test_rownames <- function(file) {
+  data <- read.delim(file = file, header = FALSE, row.names = NULL, nrows = 2)
+  if (is.na(as.numeric(data[2, 1]))) {
+    return(1)
+  } else {
+    return(NULL)
+  }
+}
+
+##### prepare input data
+data <- read.delim(file = opt$file, header = test_header(opt$file), row.names = test_rownames(opt$file))
+data <- data %>% select(where(is.numeric))  # remove non numeric columns
+mdata <- melt(data)
+
+##### main
+
+# determine optimal number of bins (Sturges’ Rule)
+bins <- ceiling(log2(nrow(data)) + 1)
+# plot
+p <- plot_histograms(mdata, profile = opt$profile, xscale = opt$xscale, bins = bins, yscale = opt$yscale)
+
+# determine optimal width for the graph
+width <- length(data)
+width <- case_when(
+  width == 1 ~ 14 / 3,
+  width == 2 ~ (2 / 3) * 14,
+  TRUE ~ 14
+)
+# determine optimal height for the graph
+height <- length(data)
+height <- case_when(
+  height <= 3 ~ 3,
+  height <= 6 ~ 6,
+  TRUE ~ (floor(height / 3) + 1) * 3
+)
+# determine optimal number of col for the graph
+ncol <- length(data)
+ncol <- case_when(
+  ncol == 1 ~ 1,
+  ncol == 2 ~ 2,
+  TRUE ~ 3
+)
+pdf(opt$pdf, width = width, height = height)
+print(p + facet_wrap(~variable, ncol = ncol, scales = "free"))
+dev.off()
+
+# Summary statistics with vtable package
+summary_df <- sumtable(data, digits = 8, out = "return", add.median = TRUE,
+                       summ.names = c("N", "Mean", "Std. Dev.", "Min", "Pctl. 25",
+                                      "Median", "Pctl. 75", "Max"))
+write.table(summary_df, file = opt$summary, sep = "\t", quote = FALSE, row.names = FALSE)
diff -r 000000000000 -r bdf40b0924cb ez_histograms.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/ez_histograms.xml	Wed Feb 07 19:49:56 2024 +0000
@@ -0,0 +1,166 @@
+<tool id="ez_histograms" name="ez_histograms" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
+    <macros>
+        <token name="@TOOL_VERSION@">3.4.4</token>
+        <token name="@VERSION_SUFFIX@">0</token>
+        <token name="@PROFILE@">23.0</token>
+    </macros>
+    <requirements>
+        <requirement type="package" version="3.4.4">r-ggplot2</requirement>
+        <requirement type="package" version="1.4.4">r-reshape2</requirement>
+        <requirement type="package" version="1.1.4">r-dplyr</requirement>
+        <requirement type="package" version="1.3.0">r-scales</requirement>
+        <requirement type="package" version="1.4.6">r-vtable</requirement>
+        <requirement type="package" version="1.7.4">r-optparse</requirement>
+    </requirements>
+
+    <stdio>
+        <exit_code range="1:" level="fatal" />
+    </stdio>
+    
+    <command detect_errors="exit_code"><![CDATA[
+    Rscript $__tool_directory__/ez_histograms.R
+        --file '$file'
+        --profile '$plot_options.plot_options_selector'
+        --xscale '$plot_options.xscale'
+        #if str($plot_options.plot_options_selector) == "count":
+            --yscale '$plot_options.yscale'
+        #end if
+        --pdf '$pdf'
+        --summary '$summary'
+    ]]></command>
+
+    <inputs>
+        <param name="file" type="data" format="tabular" label="Input tabular dataset"
+               help="Only numeric columns will be plotted"/>
+        <conditional name="plot_options">
+            <param name="plot_options_selector" type="select" label="Set plot types">
+                <option value="count" selected="true">Count Histograms</option>
+                <option value="density">Density Plots</option>
+            </param>
+            <when value="density">
+                <param name="xscale" type="select" label="Set x-axis scale">
+                    <option value="cartesian" selected="true">Cartesian</option>
+                    <option value="log2">log2</option>
+                    <option value="log10">log10</option>
+                </param>
+            </when>
+            <when value="count">
+                <param name="xscale" type="select" label="Set x-axis scale">
+                    <option value="cartesian" selected="true">Cartesian</option>
+                    <option value="log2">log2</option>
+                    <option value="log10">log10</option>
+                </param>
+                <param name="yscale" type="select" label="Set y-axis scale">
+                    <option value="cartesian" selected="true">Cartesian</option>
+                    <option value="log2">log2</option>
+                    <option value="log10">log10</option>
+                </param>
+            </when>
+        </conditional>
+    </inputs>
+    <outputs>
+        <data name="pdf" format="pdf" label="${tool.name} plots from ${on_string}"/>
+        <data name="summary" format="tabular" label="Statistics Summary from ${on_string}"/>
+    </outputs>
+    <tests>
+        <test expect_num_outputs="2">
+            <param name="file" value="classic.tsv"/>
+            <param name="plot_options_selector" value="count"/>
+            <param name="xscale" value="cartesian"/>
+            <param name="yscale" value="cartesian"/>
+            <output name="pdf" file="classic.pdf"/>
+            <output name="summary" file="summary_1.tsv"/>
+       </test>
+        <test expect_num_outputs="2">
+            <param name="file" value="counts.tsv"/>
+            <param name="plot_options_selector" value="count"/>
+            <param name="xscale" value="log2"/>
+            <param name="yscale" value="cartesian"/>
+            <output name="pdf" file="count.pdf"/>
+            <output name="summary" file="summary_2.tsv"/>
+       </test>
+        <test expect_num_outputs="2">
+            <param name="file" value="headless.tsv"/>
+            <param name="plot_options_selector" value="count"/>
+            <param name="xscale" value="log10"/>
+            <param name="yscale" value="log2"/>
+            <output name="pdf" file="headless.pdf"/>
+            <output name="summary" file="summary_3.tsv"/>
+       </test>
+        <test expect_num_outputs="2">
+            <param name="file" value="large.tsv"/>
+            <param name="plot_options_selector" value="density"/>
+            <param name="xscale" value="log2"/>
+            <output name="pdf" file="large.pdf"/>
+            <output name="summary" file="summary_4.tsv"/>
+       </test>
+        <test expect_num_outputs="2">
+            <param name="file" value="rowheadless.tsv"/>
+            <param name="plot_options_selector" value="density"/>
+            <param name="xscale" value="cartesian"/>
+            <output name="pdf" file="rowheadless.pdf"/>
+            <output name="summary" file="summary_5.tsv"/>
+       </test>
+        <test expect_num_outputs="2">
+            <param name="file" value="single_headed_col.tsv"/>
+            <param name="plot_options_selector" value="density"/>
+            <param name="xscale" value="log10"/>
+            <output name="pdf" file="single_headed_col.pdf"/>
+            <output name="summary" file="summary_6.tsv"/>
+       </test>
+    </tests>
+    <help><![CDATA[
+**What it does**
+
+The tool generates faceted histograms or density plots using the ggplot2 functions
+geom_histogram() or geom_density(), respectively.
+
+**Inputs**
+
+Any regular tabular data, provided that the number of columns (tabulations) is unchanged
+for any row.
+
+Except for the first one, any column will be considered as one variable with n_rows
+observations. However, non-numeric columns will be filtered and will not be considered
+variables.
+
+If the first column is not numeric, it will be taken as row names (ie observation identifiers),
+otherwise, it will be considered as the first numerical variable of the table.
+
+If the first row is not numerical, it will be considered as a header, ie as describing the
+variable names.
+
+If you provide a table without header, variable names will be assigned to each column
+following the R default rule: (V1), V2, ..., Vn
+
+**Parameters**
+
+For Count Histograms, both x- and y-axis can have linear (cartesian), log2 or log10 scales.
+
+For Density Plots, only x-axis can be customized with linear (cartesian), log2, or log10
+scales
+
+**Outputs**
+
+The ez_histograms Galaxy tool returns
+
+- A pdf file with plots faceted on three columns
+- A tsv file with statistics summary of the variables generated by the R package vtables
+
+    ]]></help>
+    <citations>
+        <citation type="bibtex">
+@BOOK{Wickham2016-ic,
+    title = "Ggplot2: Elegant graphics for data analysis",
+    author = "Wickham, Hadley",
+    publisher = "Springer International Publishing",
+    series = "Use R!",
+    edition = 2,
+    month = jun,
+    year = 2016,
+    address = "Cham, Switzerland",
+    language = "en",
+    isbn = "9783319242774"
+}        </citation>
+    </citations>
+</tool>
diff -r 000000000000 -r bdf40b0924cb test-data/classic.pdf
Binary file test-data/classic.pdf has changed
diff -r 000000000000 -r bdf40b0924cb test-data/classic.tsv
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/classic.tsv	Wed Feb 07 19:49:56 2024 +0000
@@ -0,0 +1,991 @@
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+ENSG00000210164	0.61347289059817	-0.324270058479777	0.435226357811136	-0.745060708433683	0.456235020639746	NA
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+ENSG00000210184	0.523962364621466	-0.19681519608212	0.37149059830375	-0.5297985924295	0.596251581249291	NA
+ENSG00000210191	1.04590948034002	0.135216589288837	0.422149712924856	0.32030482349968	0.748737267003563	NA
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diff -r 000000000000 -r bdf40b0924cb test-data/count.pdf
Binary file test-data/count.pdf has changed
diff -r 000000000000 -r bdf40b0924cb test-data/counts.tsv
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/counts.tsv	Wed Feb 07 19:49:56 2024 +0000
@@ -0,0 +1,1001 @@
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diff -r 000000000000 -r bdf40b0924cb test-data/headless.pdf
Binary file test-data/headless.pdf has changed
diff -r 000000000000 -r bdf40b0924cb test-data/headless.tsv
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/headless.tsv	Wed Feb 07 19:49:56 2024 +0000
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diff -r 000000000000 -r bdf40b0924cb test-data/large.pdf
Binary file test-data/large.pdf has changed
diff -r 000000000000 -r bdf40b0924cb test-data/large.tsv
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/large.tsv	Wed Feb 07 19:49:56 2024 +0000
@@ -0,0 +1,1001 @@
+Genes	SC_ph2_46_WT_d0	SC_ph2_46_WT_d2	SC_ph2_46_WT_d4	SC_ph2_46_WT_d6	SC_ph2_46_WT_d9	SC_ph2_46_WT_d11	SC_ph2_46_WT_d14	SC_ph2_44_KO_d0	SC_ph2_44_KO_d2	SC_ph2_44_KO_d4	SC_ph2_44_KO_d6	SC_ph2_44_KO_d9	SC_ph2_44_KO_d11	SC_ph2_44_KO_d14	SC_ph2_42_WT_d0	SC_ph2_42_WT_d2	SC_ph2_42_WT_d4	SC_ph2_42_WT_d6	SC_ph2_42_WT_d9	SC_ph2_42_WT_d11	SC_ph2_42_WT_d14	SC_ph2_20_KO_d0	SC_ph2_20_KO_d4	SC_ph2_20_KO_d6	SC_ph2_20_KO_d9	SC_ph2_20_KO_d11	SC_ph2_20_KO_d14	SC_wtc11_62_WT_d0	SC_wtc11_62_WT_d2	SC_wtc11_62_WT_d4	SC_wtc11_62_WT_d6	SC_wtc11_62_WT_d9	SC_wtc11_62_WT_d11	SC_wtc11_62_WT_d14	SC_wtc11_59_WT_d0	SC_wtc11_59_WT_d2	SC_wtc11_59_WT_d4	SC_wtc11_59_WT_d6	SC_wtc11_59_WT_d9	SC_wtc11_59_WT_d11	SC_wtc11_59_WT_d14	SC_wtc11_44_KO_d0	SC_wtc11_44_KO_d2	SC_wtc11_44_KO_d4	SC_wtc11_44_KO_d6	SC_wtc11_44_KO_d9	SC_wtc11_44_KO_d11	SC_wtc11_44_KO_d14	CBI_NG_5925_d0	CBI_NG_5925_d7	CBI_NG_5925_d14	CBI_NG_5925_d21	CBI_NG_5925_d28	CBI_NG_5925_d35	CBI_NG_2266_d0	CBI_NG_2266_d7	CBI_NG_2266_d14	CBI_NG_2266_d21	CBI_NG_2266_d28	CBI_NG_2266_d35	CBI_ph2_44_KO_d0	CBI_ph2_44_KO_d7	CBI_ph2_44_KO_d14	CBI_ph2_44_KO_d21	CBI_ph2_44_KO_d28	CBI_ph2_44_KO_d35	CBI_ph2_25_WT_d0	CBI_ph2_25_WT_d7	CBI_ph2_25_WT_d14	CBI_ph2_25_WT_d21	CBI_ph2_25_WT_d28	CBI_ph2_25_WT_d35	CBII_NG_5925_d7	CBII_NG_5925_d14	CBII_NG_5925_d21	CBII_NG_5925_d28	CBII_NG_5925_d35	CBII_NG_2266_d7	CBII_NG_2266_d14	CBII_NG_2266_d21	CBII_NG_2266_d28	CBII_NG_2266_d35	CBII_ph2_44_KO_d7	CBII_ph2_44_KO_d14	CBII_ph2_44_KO_d21	CBII_ph2_44_KO_d28	CBII_ph2_44_KO_d35	CBII_ph2_25_WT_d7	CBII_ph2_25_WT_d14	CBII_ph2_25_WT_d21	CBII_ph2_25_WT_d28	CBII_ph2_25_WT_d35	CBIII_ph2_25_WT_d14	CBIII_ph2_25_WT_d21	CBIII_ph2_25_WT_d28	CBIII_ph2_25_WT_d35
+ENSG00003	6.64	6.07	6.61	6.31	6.20	5.81	5.35	5.98	6.38	6.83	6.23	6.12	5.88	5.14	6.04	6.34	6.98	6.17	6.01	5.62	5.08	6.81	6.78	6.43	6.24	5.55	5.15	7.09	6.32	6.84	6.52	6.35	5.21	5.02	5.96	6.42	7.04	6.34	6.31	5.58	4.93	6.23	6.32	6.81	6.21	6.27	5.69	4.92	6.12	6.98	7.00	6.90	6.53	6.49	6.08	6.88	7.17	6.98	6.81	6.37	6.11	6.74	6.99	6.74	6.48	5.95	6.15	6.74	6.89	7.04	7.09	6.82	6.79	6.84	6.88	6.58	6.45	6.48	6.86	6.81	6.84	6.49	6.74	6.81	6.81	6.39	6.14	6.89	7.04	6.87	7.24	6.92	6.64	6.58	6.86	6.78
+ENSG00005	1.58	2.78	1.30	0	0	0	0.12	2.06	2.52	0.24	0	0.12	0.22	0	1.27	1.55	0	0.12	0	0.14	0	0.71	0.55	0	0.26	0	0	1.25	0.58	0	0	0	0.10	0	3.46	3.73	0.49	0.11	0.11	0	0	1.64	1.92	0.10	0	0.24	0.15	0.22	1.78	0.61	0.27	0.12	0.38	0.24	3.47	1.92	0.45	0.25	0	0.12	1.45	1.43	0.18	0.21	0.21	0.11	4.38	1.91	0.32	0	0.89	0.72	0.87	0.13	0	0.67	1.38	2.38	0.09	0	0	0.42	1.29	0	0.22	0	0.11	1.20	0.56	0.11	1.10	1.57	0.38	0	0.99	2.03
+ENSG00419	3.26	4.91	4.17	4.26	4.24	3.48	3.56	4.22	4.63	4.61	4.23	4.23	4.37	4.34	4.32	4.71	4.39	4.35	4.25	3.87	3.93	3.49	4.50	4.34	4.20	3.61	3.37	3.87	4.52	4.27	4.48	4.31	3.55	3.43	4.29	4.55	4.47	4.24	4.33	4.08	3.76	4.63	4.46	4.36	4.30	4.34	4.18	3.80	4.50	4.41	4.27	4.35	4.18	4.32	4.87	4.58	4.32	4.16	4.26	4.39	4.51	4.65	4.50	4.33	4.55	4.78	4.37	4.31	4.33	3.98	3.98	4.07	4.29	4.12	4.04	3.94	4.12	4.42	4.29	4.05	4.00	4.57	4.37	4.37	4.21	4.81	4.67	4.37	4.48	3.89	4.09	3.86	4.29	4.05	3.89	3.87
+ENSG00457	2.13	2.86	2.85	3.36	3.50	3.96	4.05	2.86	2.87	3.22	3.30	2.99	3.18	3.17	3.10	2.78	3.03	3.23	3.39	3.48	3.65	1.78	2.95	3.30	3.33	3.66	3.74	2.06	2.62	2.85	3.19	3.34	3.74	3.92	2.46	2.77	3.13	3.15	3.27	3.87	3.73	2.37	2.81	3.14	3.12	3.48	3.54	3.63	2.60	3.21	3.68	4.01	3.80	3.60	2.36	3.14	3.43	3.50	3.46	2.89	2.75	3.05	3.75	3.78	3.42	3.36	2.44	3.21	3.82	3.97	3.80	3.44	3.12	3.45	3.91	3.68	3.31	2.67	3.28	3.28	2.91	2.72	3.28	3.56	3.51	3.25	3.18	3.23	3.59	3.86	3.89	3.51	3.65	3.80	3.65	3.72
+ENSG00460	4.05	4.74	4.67	4.81	4.80	3.23	2.75	4.34	4.53	4.76	4.38	3.64	3.14	2.49	4.65	4.55	4.86	4.67	3.71	2.42	2.44	4.13	4.90	4.72	4.45	2.90	2.35	4.46	4.58	4.88	4.75	4.32	2.38	2.54	4.15	4.27	4.32	4.64	4.19	2.41	1.99	4.52	4.11	4.39	4.22	4.24	2.76	1.92	3.60	4.19	3.94	3.37	2.55	2.10	3.74	3.96	4.36	3.97	3.10	2.07	4.26	4.11	4.35	3.90	2.59	2.68	3.95	4.24	3.94	3.38	2.99	1.79	4.40	4.14	3.18	3.21	2.55	3.79	4.22	3.68	2.53	2.16	4.47	4.42	4.28	2.58	2.42	4.49	4.40	3.60	3.66	2.83	3.90	3.66	3.54	3.05
+ENSG00938	0.03	0.48	0.07	0.03	0	0	0	0.66	0.18	0.07	0	0.05	0.10	0	0.78	0.22	0	0	0	0	0.07	0.07	0.18	0	0	0	0	0.21	0.32	0	0	0	0	0	0.43	0.48	0.14	0	0	0.06	0	0.12	0.20	0.09	0	0.05	0	0	1.40	0.37	0.40	0.30	0.44	0.63	0.56	0.17	0.11	0.05	0	0.05	0.28	0.32	0.31	0.09	0.14	0.05	0.54	0.41	0.53	0.29	0	0.41	0.59	0.27	0.28	0.49	0.62	0.06	0.15	0.22	0.09	0.15	0.51	0.24	0.41	0.05	0.19	0.16	0.37	0.15	0.05	0	0.26	0.45	0	0.11
+ENSG00971	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.01	0	0	0	0	0	0	0	0	0	0	0.01	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.01	0.06	0.08	0	0	0.01	0.01	0.01	0.01	0	0	0.04	0.02	0	0.02	0	0	0.08	0.07	0.06	0.02	0	0.02	0.08	0.05	0.08	0	0	0.01	0.02	0.01	0	0.01	0	0	0	0	0.03	0.04	0.06	0.04	0.05	0.06	0.11	0.03
+ENSG01036	7.04	6.97	6.88	5.89	5.93	5.31	5.04	6.63	6.89	6.56	6.01	6.18	5.90	5.67	6.81	6.99	6.53	5.92	5.96	5.75	5.60	6.93	6.68	5.80	5.82	5.21	5.18	7.43	6.89	6.06	5.76	5.99	5.36	5.33	6.56	7.10	6.39	6.13	6.23	5.88	5.77	6.92	6.96	6.24	5.99	6.20	5.83	5.74	6.72	6.48	6.46	6.71	6.33	6.02	6.20	6.54	6.16	6.10	5.89	5.29	6.75	6.23	6.43	6.53	6.12	5.91	6.51	6.19	6.23	6.68	6.54	6.40	6.05	6.33	6.55	6.39	6.30	6.28	6.02	6.17	6.09	5.35	6.12	6.27	6.49	6.21	6.09	6.28	6.19	6.46	6.73	6.46	6.16	6.22	6.29	6.35
+ENSG01084	3.95	4.44	4.29	4.51	4.57	4.04	4.05	4.57	4.45	4.37	4.48	4.63	4.30	4.38	4.52	4.63	4.44	4.65	4.63	4.40	4.35	3.73	4.41	4.66	4.57	4.17	3.94	4.14	4.25	4.29	4.57	4.46	3.86	4.08	4.31	4.41	4.48	4.64	4.73	4.28	3.92	4.86	4.19	4.22	4.42	4.58	4.26	3.87	4.81	4.63	4.70	4.49	3.90	3.98	5.28	4.77	4.79	4.56	4.30	4.04	5.23	4.57	4.77	4.89	4.11	4.08	5.10	4.30	4.50	4.45	4.01	3.97	4.58	4.39	4.26	3.97	3.87	4.47	4.55	4.55	4.50	4.09	4.38	4.77	4.83	4.29	4.19	4.46	4.56	4.14	4.27	4.08	4.35	4.22	3.92	4.05
+ENSG01167	4.41	5.29	5.40	5.75	5.91	6.11	5.98	5.32	4.97	5.43	5.81	5.90	6.35	6.11	4.93	4.83	5.61	5.87	6.03	6.33	6.18	4.60	5.64	5.66	5.84	5.96	5.84	4.92	5.47	5.93	5.76	6.02	5.92	5.73	5.18	4.96	5.61	5.96	6.20	6.30	6.18	5.58	4.76	5.43	5.70	6.08	6.14	5.83	5.08	5.62	5.77	5.67	4.97	5.20	5.23	5.29	5.61	5.61	4.99	5.53	5.30	5.48	5.42	5.45	5.06	5.01	5.25	5.40	5.96	5.90	5.03	5.00	5.49	5.98	5.71	5.52	5.22	4.85	5.63	5.32	5.10	5.16	5.46	5.41	5.39	5.49	5.29	5.56	6.09	5.96	5.77	5.44	5.61	5.64	5.86	5.36
+ENSG01460	1.39	2.22	2.48	2.31	2.28	1.28	1.92	3.09	2.37	2.51	2.70	2.32	2.09	1.93	3.37	2.40	2.59	2.63	2.50	1.79	2.22	1.32	2.60	2.52	2.26	1.29	2.47	1.35	2.46	2.38	2.76	2.56	2.35	3.11	3.00	2.30	2.49	2.57	2.50	2.37	3.35	1.88	2.42	2.50	2.63	2.51	2.26	2.95	2.76	2.39	2.75	2.74	2.47	3.17	2.10	2.58	2.69	2.64	2.13	2.50	2.46	2.75	3.07	2.96	2.84	2.77	2.14	2.70	2.28	3.02	3.14	3.91	2.49	2.62	2.47	2.97	3.29	2.77	2.87	2.76	2.96	2.72	2.95	3.15	2.50	2.68	2.96	3.00	1.99	2.66	3.32	3.84	2.03	2.08	3.12	3.85
+ENSG01461	2.20	1.67	1.76	1.90	2.53	3.69	3.73	2.61	1.41	1.60	2.73	2.79	4.08	4.30	2.54	1.21	1.76	2.25	3.07	4.63	3.93	1.66	2.06	1.98	2.74	3.50	3.40	2.33	1.68	1.82	2.54	3.30	4.13	4.01	2.42	1.53	1.83	2.38	2.89	4.41	4.27	2.30	1.97	1.83	2.91	3.08	4.40	4.52	2.78	2.05	2.90	3.75	3.92	4.33	2.58	2.84	2.77	3.05	3.14	3.70	2.97	1.93	3.10	3.38	3.89	3.77	2.60	2.31	2.56	3.83	3.68	4.32	2.11	2.88	3.80	3.93	4.05	2.80	3.02	3.14	4.03	3.87	2.50	3.18	2.97	4.13	4.06	2.29	2.49	3.57	3.89	4.10	2.33	3.24	3.83	3.93
+ENSG01497	3.64	4.52	4.91	4.90	4.79	4.76	4.70	4.83	4.80	4.92	4.87	4.76	4.47	4.62	5.02	4.75	4.87	4.89	4.81	4.35	4.75	3.40	4.86	4.69	4.83	4.71	4.71	4.13	4.69	4.93	4.90	4.98	4.70	5.14	4.77	4.55	4.70	4.80	4.66	4.40	4.18	4.79	4.63	4.71	4.78	4.78	4.46	4.31	4.85	4.92	4.58	4.40	4.37	3.93	4.72	4.73	4.84	4.61	4.42	3.98	4.49	4.78	4.67	4.47	4.13	4.17	4.53	4.83	4.65	4.33	4.55	4.07	4.94	4.57	4.42	4.56	4.42	4.62	4.83	4.60	4.26	4.00	4.81	4.58	4.47	4.12	4.08	4.85	4.66	4.35	4.24	4.29	4.78	4.56	4.39	4.55
+ENSG01561	3.47	3.53	3.44	3.40	3.15	2.97	3.69	3.19	3.11	3.59	3.81	3.89	3.67	4.01	2.95	3.05	3.19	3.59	3.92	3.49	3.74	3.35	3.42	3.60	3.55	3.27	3.74	3.45	3.58	3.84	3.98	3.97	3.57	4.23	3.56	3.45	3.62	3.87	3.85	3.68	4.09	3.24	3.25	3.62	4.03	4.12	3.97	3.97	2.96	3.71	3.75	4.29	3.96	4.49	2.44	3.22	3.47	3.57	3.70	4.01	3.08	3.40	3.68	4.05	4.43	4.34	2.75	3.72	2.89	3.45	3.67	4.52	3.33	3.29	3.62	3.83	4.37	2.91	3.81	3.36	3.89	3.96	3.79	3.52	3.80	4.57	4.45	3.90	2.80	3.07	3.48	4.00	2.17	3.31	3.68	3.77
+ENSG01617	5.27	2.82	2.63	2.92	2.47	3.09	4.34	5.64	3.13	4.29	4.37	4.09	3.29	3.36	5.45	3.10	3.36	3.83	3.74	3.73	4.33	5.05	2.69	3.60	2.82	3.48	4.77	5.83	3.12	2.53	2.56	2.28	2.91	3.92	5.52	2.91	2.23	2.86	2.77	2.66	3.70	5.20	2.47	3.75	4.44	3.02	2.34	3.21	5.99	5.93	5.80	6.08	5.50	5.40	5.80	6.08	6.46	5.56	4.44	4.60	4.92	5.88	6.29	5.80	4.80	3.52	5.48	6.04	5.57	5.63	4.80	5.22	5.79	5.77	6.05	5.57	5.35	5.68	6.99	5.75	4.86	4.19	5.73	6.18	5.80	4.43	3.69	6.04	5.32	5.34	4.79	4.95	5.09	5.29	4.79	4.75
+ENSG01626	0.31	0.83	0.27	0.04	0.01	0	0	0.62	0.15	0	0.00	0.03	0.05	0.03	0.59	0.26	0.02	0.01	0.01	0.05	0	0.28	0.06	0.03	0	0	0	0.40	0.15	0	0.01	0.02	0	0	0.29	0.16	0	0.05	0.02	0.01	0	0.21	0.25	0.01	0.10	0.10	0.05	0	0.23	0.09	0.27	0.12	0.03	0.08	0.27	0.99	0.32	0.48	0.23	0.01	1.27	0.49	0.18	0.10	0.04	0.02	0.54	0.16	0.21	0.48	1.09	0.56	0.09	0.28	0.14	0.10	0.05	0.43	0.22	0.14	0.14	0	0.21	0.27	0.27	0	0.02	0.20	0.45	0.56	1.06	0.43	0.58	0.43	0.60	0.62
+ENSG01629	4.22	4.99	4.67	4.84	5.16	5.91	6.00	5.54	5.40	5.32	5.27	5.36	5.75	5.93	5.44	5.26	5.29	5.35	5.47	6.20	6.15	4.45	5.10	5.19	5.34	5.94	5.85	4.76	5.25	4.92	5.10	5.26	5.81	5.91	5.41	5.41	5.10	5.16	5.39	6.13	5.93	5.53	5.32	5.12	5.36	5.42	5.89	5.92	5.37	5.53	5.03	5.65	5.43	5.59	5.34	5.28	5.17	4.96	5.01	5.30	5.51	5.41	5.32	5.43	5.29	5.51	5.19	5.28	5.16	5.51	5.44	5.33	5.39	5.05	5.67	5.67	5.37	5.24	5.19	5.00	5.08	5.34	5.63	5.20	5.22	5.66	5.65	5.65	5.09	5.33	5.80	5.66	4.88	5.08	5.61	5.77
+ENSG01630	3.86	3.64	3.32	3.49	3.96	4.60	4.70	2.67	3.78	3.81	4.05	4.46	4.32	4.14	2.47	4.03	3.55	4.02	4.07	4.73	4.64	2.84	3.53	3.80	4.29	4.87	5.00	4.64	3.57	3.59	3.94	3.99	4.76	4.78	3.05	2.92	3.19	3.87	3.77	4.49	4.89	4.01	2.97	3.55	3.95	3.97	4.22	4.94	2.89	2.93	3.29	3.23	3.20	3.26	3.23	1.86	2.95	2.96	3.24	4.12	2.59	2.18	3.10	3.51	3.60	4.05	3.19	2.38	3.13	3.02	3.19	3.24	3.09	3.18	3.58	3.30	3.06	1.79	2.82	2.87	3.27	3.07	2.53	3.02	3.35	3.76	4.28	2.46	3.20	3.01	3.08	3.23	2.83	3.19	3.41	3.56
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+ENSG05187	0.23	0.25	0.30	0.57	0.14	0.22	0.11	2.62	0.70	0.76	3.12	1.87	1.07	0.77	2.15	0.36	0.36	1.75	0.89	0.26	0.34	1.00	0.58	1.05	0.28	0.17	0.22	0.63	0.42	0.25	0.50	0.25	0.28	0.48	1.70	0.68	0.23	0.97	0.46	0.24	0.45	0.39	0.53	0.39	3.16	1.01	1.05	0.44	2.24	1.11	0.80	1.51	0.93	0.93	1.15	1.51	2.00	2.90	1.17	0.65	1.26	2.10	1.30	0.86	0.62	0.41	1.11	2.18	1.18	2.31	1.04	1.23	0.97	0.66	1.72	1.26	1.11	1.92	1.44	1.95	1.22	0.22	2.44	1.12	0.73	0.45	0.49	2.46	1.04	1.61	1.06	0.94	0.69	1.45	1.05	0.79
+ENSG05189	2.53	2.99	3.06	3.90	3.82	2.79	1.68	3.09	2.65	2.75	3.61	3.75	4.46	3.57	3.36	2.80	2.95	3.84	3.95	3.10	2.63	1.80	3.10	3.36	3.33	2.21	1.85	2.61	2.96	3.33	3.69	3.68	2.03	2.24	3.42	2.74	2.72	3.81	3.57	2.77	2.41	3.03	2.97	2.74	3.81	3.90	3.29	2.29	3.27	3.41	3.70	3.98	4.12	4.17	2.41	2.39	3.19	3.28	3.94	3.49	2.59	2.86	3.58	3.71	4.34	3.83	2.22	3.32	3.26	3.15	3.73	3.78	3.36	3.56	3.65	3.59	3.89	2.66	3.31	3.31	3.73	3.48	3.09	3.43	3.80	4.25	4.17	3.03	3.45	3.35	3.55	3.92	3.57	3.21	3.49	3.61
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+ENSG05206	5.61	5.58	5.45	6.00	6.07	5.95	5.40	5.11	4.90	4.97	5.76	5.66	5.77	6.01	5.28	4.77	4.80	5.63	5.61	5.85	5.92	5.32	5.13	5.66	6.12	6.01	5.42	5.69	5.80	5.47	5.92	5.90	5.75	5.81	4.78	4.47	4.50	5.50	5.31	5.58	5.08	4.57	4.84	4.92	5.34	5.48	5.67	5.30	4.96	5.13	5.14	5.05	5.14	5.08	4.23	4.91	4.96	5.40	5.09	5.18	4.63	5.38	5.17	5.68	5.67	5.98	4.70	5.43	5.39	5.54	5.74	5.58	5.54	5.42	5.63	5.35	5.28	5.23	5.26	5.74	5.20	5.22	5.34	5.48	5.49	5.58	5.71	5.18	5.28	5.61	5.43	5.62	5.93	5.64	5.49	6.02
+ENSG05238	2.17	3.41	3.54	4.00	4.70	5.93	5.41	2.72	2.80	3.37	4.32	4.90	5.09	5.25	1.72	2.67	2.82	3.80	4.68	5.64	5.21	1.71	3.25	3.84	4.73	5.90	5.35	2.32	3.29	3.06	3.65	4.76	5.87	5.54	2.62	2.75	3.12	3.74	4.40	5.69	5.26	3.08	2.91	3.20	3.81	4.36	5.35	5.24	2.35	3.95	4.38	5.21	5.27	5.27	2.99	3.46	3.57	4.23	4.94	5.17	2.60	3.16	4.05	4.80	5.45	5.36	2.76	3.55	3.98	4.62	4.97	5.06	3.73	4.40	5.11	5.23	5.14	3.03	3.83	4.23	5.03	5.08	3.34	4.15	4.86	5.61	5.69	3.52	3.81	4.35	5.03	5.21	3.89	4.54	5.15	5.18
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+ENSG06015	4.82	4.82	5.45	5.71	5.55	5.70	5.41	5.49	5.05	5.24	5.39	5.25	5.09	4.82	5.74	5.26	5.38	5.43	5.48	5.38	5.10	4.94	5.34	5.43	5.56	5.74	5.62	5.49	5.56	5.56	5.83	5.60	5.82	5.91	5.58	5.05	5.07	5.82	5.60	5.64	5.37	5.50	5.21	5.04	5.17	5.42	5.52	5.58	5.52	5.33	5.42	4.97	5.53	5.39	4.40	5.13	5.52	5.31	5.12	4.86	4.99	5.37	5.38	5.08	4.37	4.39	5.28	5.54	5.40	5.42	5.42	5.23	5.80	5.75	5.55	5.57	5.57	5.25	5.73	5.37	4.84	4.66	5.21	5.44	5.17	3.79	4.46	5.29	5.49	5.46	5.30	5.22	5.50	5.32	5.29	5.36
+ENSG06016	2.11	3.17	0.94	0.54	0.98	0.70	1.30	2.81	1.93	1.07	1.13	2.22	2.15	2.85	4.43	2.97	0.48	0.49	2.04	1.48	2.02	3.75	1.51	0.69	0.88	0.82	1.52	2.15	0.76	0.39	0	0.58	0.37	0.81	3.04	1.90	0.11	0.42	0.50	0.49	0.98	2.04	1.06	0.37	0.50	0.83	1.06	1.23	4.09	1.96	2.75	2.44	1.84	2.04	4.33	3.96	1.38	2.28	1.97	1.73	3.56	2.66	1.27	1.74	0.30	0	3.12	2.42	0.88	0.83	0.98	1.05	1.93	2.16	1.98	2.65	2.74	3.78	1.25	1.98	1.32	1.08	2.17	1.53	1.00	0.12	0.21	2.22	0.89	0.81	1.02	2.09	0.75	0.50	1.02	1.11
+ENSG06025	2.91	3.67	3.57	3.45	3.59	4.43	4.40	3.06	2.62	2.90	3.43	3.36	3.94	4.85	2.57	2.37	2.56	3.10	3.24	4.16	4.54	3.09	3.11	3.31	3.79	4.59	4.43	3.09	3.57	3.39	3.42	3.91	4.56	4.61	2.95	2.24	2.59	3.05	3.16	4.05	3.94	2.57	2.55	3.01	3.26	3.31	3.95	4.23	2.28	2.73	2.94	3.45	3.95	3.92	2.41	2.75	2.82	3.32	3.23	3.74	3.00	2.80	3.35	3.79	4.45	5.02	2.91	2.87	3.81	3.99	3.70	4.12	3.32	3.47	3.89	3.87	3.79	3.12	3.14	3.71	3.72	4.00	2.88	3.48	3.47	4.11	4.58	3.01	3.39	4.00	3.62	3.99	3.75	3.95	3.86	4.26
+ENSG06042	5.24	6.12	6.67	7.24	6.92	5.53	5.38	5.47	6.07	6.71	6.82	6.54	6.11	5.52	5.80	6.09	6.77	7.03	6.52	5.89	5.62	4.94	6.59	6.86	6.66	5.41	5.32	5.26	6.20	6.76	7.26	6.81	5.46	5.50	5.05	5.85	6.90	7.23	6.86	5.86	5.41	5.68	5.68	6.75	7.09	6.83	5.99	5.31	5.34	6.51	6.64	6.37	6.23	5.60	5.10	5.35	6.59	6.95	6.70	6.16	4.97	5.96	6.58	6.47	5.98	5.35	5.16	5.92	6.14	6.26	6.57	6.24	6.49	6.45	6.28	6.09	5.71	5.56	6.43	6.79	6.72	5.95	6.28	6.36	6.47	5.42	5.14	6.15	6.10	6.33	6.49	6.37	6.09	6.10	6.24	6.58
+ENSG06047	3.91	4.69	3.67	1.78	2.03	1.36	2.30	6.03	4.42	3.39	2.46	2.33	2.13	1.79	6.28	4.27	2.91	2.06	1.83	0.83	1.82	5.02	3.20	2.34	2.51	1.90	2.40	3.97	4.13	2.82	2.15	1.71	1.72	2.86	4.66	3.04	1.51	1.04	0.91	0.89	2.09	3.59	3.69	2.09	1.32	1.29	0.76	1.72	5.33	4.38	2.93	2.62	2.11	2.52	4.26	4.78	2.19	2.48	1.54	1.69	4.53	5.28	3.39	3.90	3.45	2.87	4.77	5.03	2.98	2.74	3.42	3.67	4.24	3.06	2.82	2.58	3.39	5.44	2.72	3.30	2.54	1.63	5.40	3.83	3.88	3.30	3.19	4.98	1.92	2.49	2.93	2.91	2.37	2.39	2.75	3.45
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+ENSG06071	0.80	1.53	1.45	1.48	1.93	2.12	2.70	1.38	1.42	1.47	1.49	1.53	2.10	2.56	1.20	1.46	1.28	1.46	1.58	2.44	2.30	1.03	1.53	1.71	1.99	2.15	2.56	0.53	1.17	0.88	0.77	0.82	0.99	1.68	0.53	0.73	0.66	0.44	0.54	1.19	1.27	0.18	0.92	0.86	0.41	0.54	0.98	1.20	0.79	0.54	0.53	0.63	0.96	0.82	0.82	1.05	1.54	2.00	1.82	1.45	0.95	1.23	1.17	1.86	1.68	1.56	1.02	1.55	1.29	2.02	2.10	1.82	0.49	0.38	0.74	0.79	0.78	1.37	1.31	2.13	1.70	1.47	1.34	1.35	1.98	1.77	1.77	1.52	1.47	2.22	1.90	2.20	1.87	2.62	1.91	2.45
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+ENSG06118	6.50	6.02	7.05	6.72	7.06	8.80	8.62	5.87	5.96	6.42	6.29	6.48	7.38	8.02	5.21	6.00	7.14	6.27	6.68	8.13	8.78	6.08	6.81	6.61	7.22	9.02	8.66	6.93	6.69	7.39	6.74	7.12	8.91	8.79	5.89	6.17	6.60	6.35	6.50	8.00	7.94	5.89	5.83	6.34	5.83	6.25	7.39	8.21	5.60	6.28	7.18	7.49	7.56	7.54	5.10	6.03	6.70	7.31	7.08	7.69	5.70	6.02	6.88	7.40	6.74	6.36	5.64	6.16	7.32	8.21	7.27	7.20	6.67	7.39	7.81	7.57	7.22	5.93	6.95	7.44	7.19	7.37	6.09	6.93	7.17	6.34	6.52	6.17	7.22	8.22	7.32	7.19	7.33	8.27	7.45	7.34
+ENSG06125	5.62	7.50	7.71	7.31	7.39	8.29	8.79	7.24	7.57	7.82	7.44	7.38	7.63	8.13	7.20	7.55	7.78	7.43	7.30	8.15	8.48	5.29	7.76	7.35	7.32	8.26	8.67	6.42	7.58	7.74	7.42	7.60	8.40	8.74	7.58	7.77	7.85	7.46	7.55	8.31	8.80	7.62	7.66	7.83	7.42	7.59	7.96	8.56	7.51	7.99	8.00	7.95	8.21	8.47	7.51	7.68	7.96	7.77	8.05	8.19	7.58	7.42	7.81	7.68	8.01	8.11	7.22	7.54	7.77	7.89	7.89	8.08	7.84	7.68	7.80	8.16	8.36	7.41	7.81	7.57	8.04	7.93	7.67	7.54	7.60	8.22	8.20	7.85	7.62	7.69	8.14	8.11	7.56	7.56	8.14	7.97
+ENSG06128	3.91	2.03	0.28	0.32	0.26	2.04	2.98	3.39	1.55	0.76	0.32	0.10	0.91	1.39	5.37	1.68	0.30	0.10	0.10	1.10	2.12	3.44	0.34	0.19	0.42	1.75	3.52	2.38	0.19	0.20	0	0.09	1.11	2.44	1.80	0.39	0.19	0.45	0.66	0.69	1.79	0.75	0.10	0.09	0.72	0.11	0.81	0.77	2.84	0.67	1.86	4.32	6.82	7.23	2.11	2.49	0.48	1.58	4.16	4.56	5.32	2.51	1.95	2.57	2.40	4.22	3.05	1.31	2.59	3.70	4.01	4.17	0.59	2.10	5.43	7.13	6.98	0.42	0.07	1.45	3.40	4.37	0.89	2.91	2.35	3.38	4.10	0.71	3.35	3.30	4.54	4.96	3.30	3.33	5.41	4.74
+ENSG06194	2.29	3.18	3.32	3.52	3.44	3.27	3.30	3.34	3.08	3.31	3.33	3.43	3.23	3.67	3.76	2.96	3.12	3.26	3.62	3.11	3.21	2.50	3.33	3.49	3.50	3.26	3.31	2.68	3.35	3.41	3.62	3.29	3.33	3.40	2.77	3.07	3.29	3.44	3.48	3.35	3.34	3.19	2.94	3.20	3.51	3.47	3.49	3.49	3.91	3.58	3.51	3.36	3.48	3.82	4.05	3.47	3.44	3.48	3.76	3.90	3.31	3.60	3.56	3.82	3.99	3.91	3.61	3.37	3.49	3.55	3.73	3.52	3.39	3.60	3.46	3.36	3.58	3.21	3.24	3.41	3.67	3.75	3.13	3.53	3.54	3.78	3.83	3.26	3.55	3.40	3.44	3.59	3.55	3.46	3.46	3.54
+ENSG06210	1.30	1.97	2.66	2.16	2.16	0.58	0.53	1.19	2.87	4.77	2.03	2.28	1.33	1.58	1.16	2.85	2.79	1.80	2.34	1.16	1.14	0.91	2.84	2.51	2.19	0.54	0.63	1.29	1.92	1.28	2.38	2.19	0.92	0.92	1.29	2.90	3.76	2.06	2.07	1.18	1.60	2.11	2.48	4.26	1.58	2.04	1.65	1.66	2.11	4.12	4.28	4.27	3.90	4.20	1.14	1.17	2.54	4.48	4.27	4.51	0.97	2.35	3.44	4.12	3.65	3.24	1.25	2.77	3.43	4.44	5.23	5.09	3.37	4.12	4.20	4.22	3.94	1.15	2.44	4.55	5.15	4.73	2.72	3.50	4.53	2.93	3.19	3.02	2.94	3.77	4.63	4.80	2.77	3.50	4.24	5.00
+ENSG06282	4.23	4.40	4.30	3.81	3.59	2.34	3.41	4.35	4.37	4.71	4.53	4.43	3.75	4.01	5.07	4.48	4.37	4.04	4.29	3.83	3.79	4.18	4.30	3.93	3.95	2.93	3.69	4.27	4.55	4.03	4.22	4.15	3.48	3.94	4.86	4.50	4.36	4.53	4.32	3.99	4.14	4.05	4.72	4.74	4.59	4.49	4.35	4.04	4.57	4.82	4.73	4.70	4.81	4.95	3.38	4.09	4.01	4.44	4.40	4.51	3.64	4.53	4.66	4.66	4.97	4.61	4.27	4.60	4.78	5.50	5.57	5.72	4.87	4.84	5.20	5.18	5.18	4.16	4.35	4.68	5.11	4.87	4.59	4.67	4.46	4.70	4.75	4.48	4.37	5.21	5.31	5.50	4.29	4.91	5.17	5.41
+ENSG06283	2.09	3.54	2.85	2.18	2.94	2.52	3.64	2.69	4.36	4.06	3.24	3.28	2.04	2.32	2.49	3.95	2.70	2.41	3.53	2.88	3.12	1.72	2.91	1.90	2.39	2.53	2.46	2.19	3.02	1.75	1.68	1.59	2.31	1.72	2.44	4.07	3.49	2.73	2.29	2.43	2.97	1.88	4.77	3.93	2.71	2.64	2.65	2.79	2.66	3.96	4.87	4.96	4.91	4.87	1.53	2.73	3.05	3.50	4.25	4.14	2.24	2.82	3.78	4.26	3.39	2.79	2.26	3.33	3.77	5.20	5.17	5.28	4.02	4.53	5.28	5.55	5.15	3.03	3.53	3.94	3.73	2.79	3.17	4.00	4.44	3.67	3.56	3.49	2.97	4.02	5.31	5.23	2.94	3.29	4.89	5.12
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+ENSG08277	3.56	3.03	2.88	3.24	3.35	3.91	4.53	3.28	3.01	2.85	3.42	3.45	3.81	4.26	3.10	2.87	3.14	3.43	3.45	4.25	4.78	3.67	3.23	3.44	3.61	4.21	4.41	3.85	3.28	3.32	3.47	3.61	4.05	4.36	3.12	3.01	2.95	3.35	3.52	4.38	4.83	2.92	2.90	2.74	3.12	3.43	3.87	4.59	3.11	2.71	3.69	3.78	4.17	4.23	2.51	2.13	3.33	3.55	3.77	3.69	3.32	2.24	3.54	3.68	3.53	3.25	2.89	2.39	3.24	3.22	3.10	3.23	2.68	3.38	3.72	3.89	3.73	2.57	3.36	3.61	3.63	3.16	2.96	3.39	3.62	3.42	3.35	2.92	3.19	3.32	3.38	3.31	3.07	3.09	3.36	3.22
+ENSG08282	7.05	6.77	6.51	6.10	6.06	3.51	2.95	6.47	6.57	6.32	6.31	6.63	5.50	4.87	6.21	6.61	6.53	6.19	6.28	3.77	3.51	6.87	6.68	6.37	6.08	3.27	2.71	7.24	6.78	6.55	6.38	6.39	3.43	3.27	6.51	6.70	6.54	6.34	6.27	4.51	3.60	6.69	6.68	6.56	6.56	6.61	5.51	4.01	6.65	6.27	6.57	6.09	5.71	5.82	6.71	6.46	6.57	6.04	5.85	5.65	6.48	5.89	6.50	6.17	6.10	5.72	6.57	5.77	6.38	5.91	5.79	6.30	6.29	6.23	5.80	5.91	6.09	6.57	6.45	5.81	6.13	5.70	5.96	6.49	6.15	6.16	5.81	6.05	6.33	5.68	6.01	5.86	5.96	5.26	5.76	5.71
+ENSG08283	5.26	4.44	3.97	3.17	3.07	2.55	3.70	4.70	4.28	4.10	3.24	2.79	1.77	2.44	4.83	4.20	3.95	3.22	2.56	2.15	2.88	4.86	4.19	3.44	3.27	2.85	3.60	5.05	3.91	3.82	3.35	2.95	2.80	3.78	4.10	3.56	3.75	3.07	3.18	2.68	3.50	4.41	3.65	3.73	2.70	3.03	2.44	3.53	4.50	4.17	3.91	3.55	3.81	3.85	4.73	4.92	4.24	4.38	3.38	3.13	4.54	4.61	4.02	4.24	3.71	3.40	4.76	4.47	3.72	4.73	5.30	5.30	3.91	3.72	4.17	4.12	4.08	4.40	4.03	4.44	3.98	3.13	4.51	3.94	4.22	3.69	3.39	4.57	3.96	4.38	5.32	5.20	4.02	4.21	4.83	5.41
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+ENSG65989	0.91	2.14	2.98	2.01	1.74	2.15	3.34	2.78	2.85	3.52	2.22	1.93	1.52	3.29	3.06	2.84	3.10	2.00	1.77	1.91	3.34	1.10	3.30	1.86	1.80	2.40	3.30	1.08	2.15	2.74	2.35	2.50	2.25	3.50	2.84	2.18	2.65	1.89	1.70	2.02	3.84	2.38	2.26	3.21	2.23	2.12	1.93	3.38	2.80	4.19	3.79	2.96	3.26	4.03	2.12	3.68	3.58	3.25	3.06	3.65	3.26	3.79	3.93	3.43	3.14	2.75	2.19	3.86	3.51	3.39	3.49	3.64	4.12	3.41	2.94	3.61	3.75	3.47	3.83	3.54	3.50	3.21	3.76	3.90	3.28	2.89	2.80	3.91	2.75	2.78	3.23	3.54	2.66	2.65	3.15	3.41
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diff -r 000000000000 -r bdf40b0924cb test-data/rowheadless.pdf
Binary file test-data/rowheadless.pdf has changed
diff -r 000000000000 -r bdf40b0924cb test-data/rowheadless.tsv
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
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diff -r 000000000000 -r bdf40b0924cb test-data/single_headed_col.pdf
Binary file test-data/single_headed_col.pdf has changed
diff -r 000000000000 -r bdf40b0924cb test-data/single_headed_col.tsv
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diff -r 000000000000 -r bdf40b0924cb test-data/summary_1.tsv
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/summary_1.tsv	Wed Feb 07 19:49:56 2024 +0000
@@ -0,0 +1,7 @@
+Variable	N	Mean	Std. Dev.	Min	Pctl. 25	Median	Pctl. 75	Max
+BaseMean	990	1091.5132	2625.4763	0	31.199603	249.39264	1054.0101	33915.214
+log2FC	849	-0.38999858	1.9953097	-5.2835189	-2.0088992	-0.86544745	1.2737699	5.6079286
+StdErr	849	0.30667747	0.1285766	0.089282127	0.1962894	0.28928034	0.39630761	0.56482292
+Wald.Stats	849	-0.95820431	6.3140778	-21.603869	-5.9077253	-4.475739	5.2726083	19.585597
+P.value	848	0.030010804	0.15185376	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000016518389	0.0000000000036649168	0.000000012325875	0.0000022785953	0.98727107
+P.adj	813	0.00004223522	0.000078050135	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000034761298	0.000000000255376	0.00000044934286	0.000034873651	0.00028949939
diff -r 000000000000 -r bdf40b0924cb test-data/summary_2.tsv
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/summary_2.tsv	Wed Feb 07 19:49:56 2024 +0000
@@ -0,0 +1,16 @@
+Variable	N	Mean	Std. Dev.	Min	Pctl. 25	Median	Pctl. 75	Max
+GCB_Mg_S2	1000	672.224	1727.7831	0	69	236.5	700	38072
+GCB_Mg_S7	1000	830.225	1848.5916	0	91.5	317	857.25	34261
+GCB_Mg_S12	1000	685.564	1662.1423	0	71	253	686.25	33558
+GCB_S1	1000	450.654	1224.5977	0	38	152	459.5	29464
+GCB_S6	1000	547.793	1344.4334	0	51	194	550	28567
+GCB_S11	1000	481.844	1310.3546	0	40	152.5	462.5	29614
+GW_S5	1000	698.673	1534.1178	0	63.75	237.5	697.75	26119
+GW_S10	1000	573.137	1477.6949	0	49.75	176.5	504	29920
+GW_S15	1000	718.612	1730.7819	0	69	233.5	676	33878
+NS_S4	1000	824.02	1624.4871	0	100	336	914	28284
+NS_S9	1000	704.673	1266.9907	0	93.5	305	796.25	21678
+NS_S14	1000	883.989	1636.9581	0	114.75	366.5	1016	25492
+Starch_S3	1000	905.783	1464.8208	1	135.75	430	1099	22970
+Starch_S8	1000	973.323	1680.7842	0	138.75	426.5	1092.75	24999
+Starch_S13	1000	752.171	1404.0569	0	93	310.5	846.25	22556
diff -r 000000000000 -r bdf40b0924cb test-data/summary_3.tsv
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/summary_3.tsv	Wed Feb 07 19:49:56 2024 +0000
@@ -0,0 +1,7 @@
+Variable	N	Mean	Std. Dev.	Min	Pctl. 25	Median	Pctl. 75	Max
+V2	1000	1286.6999	2744.7392	6.5122425	100.50742	409.92217	1309.8068	33915.214
+V3	1000	-0.4092237	1.9730612	-5.2835189	-2.0884579	-0.946016	1.2600548	5.6079286
+V4	1000	0.30466439	0.1311528	0.089282127	0.19205135	0.28205562	0.40370597	0.56482292
+V5	1000	-0.9419943	6.2085133	-21.603869	-5.7808572	-4.5659907	5.0667272	19.585597
+V6	1000	0.0000018003049	0.000003260254	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000016518389	0.00000000002981881	0.000000042451763	0.0000019035803	0.000013756861
+V7	1000	0.000042996682	0.00007258655	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000034761298	0.0000000025022835	0.000001784909	0.000053393931	0.00028949939
diff -r 000000000000 -r bdf40b0924cb test-data/summary_4.tsv
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/summary_4.tsv	Wed Feb 07 19:49:56 2024 +0000
@@ -0,0 +1,97 @@
+Variable	N	Mean	Std. Dev.	Min	Pctl. 25	Median	Pctl. 75	Max
+SC_ph2_46_WT_d0	1000	3.11773	2.1477193	0	1.0975	3.285	4.7525	10.19
+SC_ph2_46_WT_d2	1000	3.63747	2.359001	0	1.525	3.935	5.33	12.17
+SC_ph2_46_WT_d4	1000	3.63669	2.4152548	0	1.2475	3.99	5.4	12.17
+SC_ph2_46_WT_d6	1000	3.66312	2.4765653	0	1.08	4.165	5.61	11.72
+SC_ph2_46_WT_d9	1000	3.73941	2.4700576	0	1.33	4.335	5.64	11.77
+SC_ph2_46_WT_d11	1000	3.61458	2.5333163	0	0.95	4.16	5.59	13.31
+SC_ph2_46_WT_d14	1000	3.64982	2.592493	0	0.715	4.14	5.6525	13.62
+SC_ph2_44_KO_d0	1000	3.76101	2.2973781	0	1.9975	4.065	5.46	11.42
+SC_ph2_44_KO_d2	1000	3.63091	2.39967	0	1.37	3.945	5.35	12.17
+SC_ph2_44_KO_d4	1000	3.74617	2.4163269	0	1.4925	4.105	5.52	12.37
+SC_ph2_44_KO_d6	1000	3.77324	2.3972206	0	1.67	4.245	5.5925	11.55
+SC_ph2_44_KO_d9	1000	3.79138	2.4189072	0	1.675	4.24	5.5925	11.58
+SC_ph2_44_KO_d11	1000	3.77987	2.4282298	0	1.715	4.29	5.58	12.36
+SC_ph2_44_KO_d14	1000	3.80486	2.4590689	0	1.44	4.345	5.63	12.76
+SC_ph2_42_WT_d0	1000	3.79097	2.3332375	0	2.0075	4.13	5.51	10.82
+SC_ph2_42_WT_d2	1000	3.61533	2.3936933	0	1.43	3.945	5.305	12.16
+SC_ph2_42_WT_d4	1000	3.66082	2.4648083	0	1.26	4.015	5.52	12.18
+SC_ph2_42_WT_d6	1000	3.70802	2.4459409	0	1.43	4.2	5.61	11.73
+SC_ph2_42_WT_d9	1000	3.78185	2.4286019	0	1.685	4.25	5.5925	11.73
+SC_ph2_42_WT_d11	1000	3.72851	2.5039993	0	1.2075	4.265	5.6625	12.96
+SC_ph2_42_WT_d14	1000	3.75931	2.5118435	0	1.17	4.255	5.62	13.31
+SC_ph2_20_KO_d0	1000	3.08787	2.117815	0	1.2375	3.22	4.64	9.94
+SC_ph2_20_KO_d4	1000	3.66303	2.4181179	0	1.31	4.08	5.39	12.04
+SC_ph2_20_KO_d6	1000	3.66579	2.4111765	0	1.3075	4.17	5.53	11.45
+SC_ph2_20_KO_d9	1000	3.73288	2.4179454	0	1.42	4.25	5.55	11.64
+SC_ph2_20_KO_d11	1000	3.60288	2.495575	0	0.8875	4.125	5.52	13.3
+SC_ph2_20_KO_d14	1000	3.5964	2.5132892	0	0.86	4.05	5.48	13.62
+SC_wtc11_62_WT_d0	1000	3.40212	2.2730132	0	1.3925	3.665	5.1025	9.86
+SC_wtc11_62_WT_d2	1000	3.63876	2.4205571	0	1.44	4.03	5.355	11.8
+SC_wtc11_62_WT_d4	1000	3.64659	2.4836605	0	1.1	4.035	5.4925	11.5
+SC_wtc11_62_WT_d6	1000	3.71569	2.4669429	0	1.4	4.26	5.6	11.35
+SC_wtc11_62_WT_d9	1000	3.80686	2.4744861	0	1.435	4.345	5.6825	11.63
+SC_wtc11_62_WT_d11	1000	3.59131	2.5337838	0	0.8875	4.05	5.525	13.35
+SC_wtc11_62_WT_d14	1000	3.7034	2.5457967	0	0.98	4.225	5.59	13.3
+SC_wtc11_59_WT_d0	1000	3.71923	2.303389	0	1.77	4.075	5.48	11.05
+SC_wtc11_59_WT_d2	1000	3.61826	2.405514	0	1.3875	3.98	5.355	11.73
+SC_wtc11_59_WT_d4	1000	3.64446	2.4750506	0	1.1675	4.04	5.53	12.04
+SC_wtc11_59_WT_d6	1000	3.73685	2.4738724	0	1.2275	4.285	5.6025	11.58
+SC_wtc11_59_WT_d9	1000	3.79347	2.4629366	0	1.425	4.325	5.64	11.71
+SC_wtc11_59_WT_d11	1000	3.8024	2.4913136	0	1.2275	4.38	5.66	12.97
+SC_wtc11_59_WT_d14	1000	3.74929	2.5130639	0	1.1875	4.195	5.615	13.63
+SC_wtc11_44_KO_d0	1000	3.75231	2.410491	0	1.615	4.09	5.5225	11.68
+SC_wtc11_44_KO_d2	1000	3.56306	2.4033411	0	1.2275	3.855	5.33	11.64
+SC_wtc11_44_KO_d4	1000	3.66319	2.457765	0	1.245	4.06	5.5125	11.92
+SC_wtc11_44_KO_d6	1000	3.73555	2.4341219	0	1.3875	4.215	5.5625	11.19
+SC_wtc11_44_KO_d9	1000	3.80402	2.4530618	0	1.44	4.32	5.6125	11.37
+SC_wtc11_44_KO_d11	1000	3.82832	2.4438198	0	1.635	4.355	5.61	12.4
+SC_wtc11_44_KO_d14	1000	3.77796	2.4686382	0	1.39	4.22	5.6125	13.43
+CBI_NG_5925_d0	1000	3.81391	2.314134	0	2.01	4.115	5.455	11.72
+CBI_NG_5925_d7	1000	3.88046	2.3760604	0	1.8975	4.235	5.605	12.15
+CBI_NG_5925_d14	1000	4.03084	2.3810075	0	2.115	4.485	5.8	12.11
+CBI_NG_5925_d21	1000	4.0982	2.3553707	0	2.2275	4.505	5.8525	12.4
+CBI_NG_5925_d28	1000	4.01713	2.3419343	0	2.15	4.47	5.73	12.81
+CBI_NG_5925_d35	1000	4.0037	2.3726751	0	2.095	4.365	5.7225	13
+CBI_NG_2266_d0	1000	3.66515	2.3917919	0	1.6	3.92	5.4825	12.1
+CBI_NG_2266_d7	1000	3.829	2.3604446	0	2	4.125	5.53	12.73
+CBI_NG_2266_d14	1000	3.99827	2.3516933	0	2.1175	4.42	5.69	12.27
+CBI_NG_2266_d21	1000	4.01182	2.3036996	0	2.3475	4.425	5.6825	12.1
+CBI_NG_2266_d28	1000	3.90413	2.3318045	0	1.94	4.295	5.57	12.27
+CBI_NG_2266_d35	1000	3.84252	2.3786142	0	1.7875	4.235	5.55	12.35
+CBI_ph2_44_KO_d0	1000	3.71693	2.3525121	0	1.7375	3.975	5.44	11.18
+CBI_ph2_44_KO_d7	1000	3.78661	2.289096	0	2.095	4.12	5.45	12.18
+CBI_ph2_44_KO_d14	1000	4.00159	2.3666751	0	2.1375	4.47	5.77	11.65
+CBI_ph2_44_KO_d21	1000	4.07712	2.3450134	0	2.3475	4.57	5.8	11.31
+CBI_ph2_44_KO_d28	1000	3.91843	2.3934397	0	2.0175	4.375	5.67	11.92
+CBI_ph2_44_KO_d35	1000	3.87058	2.415086	0	1.8675	4.3	5.59	11.56
+CBI_ph2_25_WT_d0	1000	3.67504	2.3151791	0	1.7075	3.885	5.3925	11.42
+CBI_ph2_25_WT_d7	1000	3.76218	2.2711381	0	2.0075	4.155	5.4325	12.05
+CBI_ph2_25_WT_d14	1000	3.93884	2.3528151	0	2.065	4.405	5.71	12.34
+CBI_ph2_25_WT_d21	1000	4.09695	2.3071569	0	2.51	4.55	5.7775	12.68
+CBI_ph2_25_WT_d28	1000	3.98384	2.2701825	0	2.2675	4.435	5.64	12.17
+CBI_ph2_25_WT_d35	1000	3.95099	2.2635005	0	2.3775	4.34	5.56	12.27
+CBII_NG_5925_d7	1000	3.83078	2.3576249	0	1.8975	4.195	5.5325	12.12
+CBII_NG_5925_d14	1000	3.98798	2.3425078	0	2.095	4.44	5.75	12.3
+CBII_NG_5925_d21	1000	4.09168	2.2692616	0	2.44	4.54	5.77	12.56
+CBII_NG_5925_d28	1000	4.12182	2.2650885	0	2.5975	4.545	5.7725	12.89
+CBII_NG_5925_d35	1000	4.06331	2.2135581	0	2.59	4.46	5.5725	12.97
+CBII_NG_2266_d7	1000	3.64617	2.2955894	0	1.7825	3.95	5.335	12.34
+CBII_NG_2266_d14	1000	3.92017	2.3435342	0	1.985	4.38	5.65	11.98
+CBII_NG_2266_d21	1000	3.93792	2.2685917	0	2.32	4.325	5.59	11.76
+CBII_NG_2266_d28	1000	3.92191	2.3337922	0	2.08	4.345	5.5825	11.41
+CBII_NG_2266_d35	1000	3.77144	2.3628802	0	1.7825	4.215	5.4625	11.75
+CBII_ph2_44_KO_d7	1000	3.79221	2.3017856	0	1.9175	4.165	5.48	12.27
+CBII_ph2_44_KO_d14	1000	3.94071	2.3415082	0	2.11	4.455	5.6825	11.21
+CBII_ph2_44_KO_d21	1000	3.95096	2.3618465	0	2.145	4.44	5.6925	11.2
+CBII_ph2_44_KO_d28	1000	3.92924	2.447976	0	1.915	4.375	5.71	11.65
+CBII_ph2_44_KO_d35	1000	3.90667	2.4296602	0	1.825	4.35	5.65	11.96
+CBII_ph2_25_WT_d7	1000	3.83587	2.3139054	0	2.0125	4.24	5.55	12.12
+CBII_ph2_25_WT_d14	1000	3.924	2.3734098	0	1.985	4.42	5.6725	12.55
+CBII_ph2_25_WT_d21	1000	4.00121	2.2999763	0	2.3225	4.46	5.68	12.87
+CBII_ph2_25_WT_d28	1000	4.08491	2.3131296	0	2.405	4.585	5.81	12.44
+CBII_ph2_25_WT_d35	1000	3.99314	2.2755044	0	2.3025	4.415	5.62	12.45
+CBIII_ph2_25_WT_d14	1000	3.84399	2.3219652	0	1.895	4.29	5.5625	12.19
+CBIII_ph2_25_WT_d21	1000	3.94112	2.288597	0	2.1575	4.38	5.61	12.84
+CBIII_ph2_25_WT_d28	1000	4.02923	2.2982489	0	2.35	4.53	5.6825	12.62
+CBIII_ph2_25_WT_d35	1000	3.98047	2.2670942	0	2.3175	4.44	5.6775	12.19
diff -r 000000000000 -r bdf40b0924cb test-data/summary_5.tsv
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/summary_5.tsv	Wed Feb 07 19:49:56 2024 +0000
@@ -0,0 +1,7 @@
+Variable	N	Mean	Std. Dev.	Min	Pctl. 25	Median	Pctl. 75	Max
+V1	1000	1286.6999	2744.7392	6.5122425	100.50742	409.92217	1309.8068	33915.214
+V2	1000	-0.4092237	1.9730612	-5.2835189	-2.0884579	-0.946016	1.2600548	5.6079286
+V3	1000	0.30466439	0.1311528	0.089282127	0.19205135	0.28205562	0.40370597	0.56482292
+V4	1000	-0.9419943	6.2085133	-21.603869	-5.7808572	-4.5659907	5.0667272	19.585597
+V5	1000	0.0000018003049	0.000003260254	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000016518389	0.00000000002981881	0.000000042451763	0.0000019035803	0.000013756861
+V6	1000	0.000042996682	0.00007258655	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000034761298	0.0000000025022835	0.000001784909	0.000053393931	0.00028949939
diff -r 000000000000 -r bdf40b0924cb test-data/summary_6.tsv
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/summary_6.tsv	Wed Feb 07 19:49:56 2024 +0000
@@ -0,0 +1,2 @@
+Variable	N	Mean	Std. Dev.	Min	Pctl. 25	Median	Pctl. 75	Max
+Counts	32833	630.15844	4127.3013	0	0	25	445	552918