Mercurial > repos > artbio > get_reference_fasta

comparison get_reference_fasta.xml @ 2:f3c9cbd84728 draft

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"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/get_reference_fasta commit 51dc6c56c7d95fc229ffee958354211cd454fd36"
author artbio
date Sun, 09 May 2021 17:08:56 +0000
parents 98211bfc53fc
children d25dc80a6a61
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1:98211bfc53fc 2:f3c9cbd84728
1 <tool id="get_fasta_reference" name="get fasta reference" version="0.2.1"> 1 <tool id="get_fasta_reference" name="get fasta reference" version="0.3.1">
2 <description>Obtain reference genome sequence</description> 2 <description>Obtain reference genome sequence</description>
3 <stdio> 3 <stdio>
4 <exit_code range="1:" /> 4 <exit_code range="1:" />
5 </stdio> 5 </stdio>
6 <command><![CDATA[ 6 <command><![CDATA[
19 <param name="pre_installed_fasta" value="EcR_USP_224.fa"/> 19 <param name="pre_installed_fasta" value="EcR_USP_224.fa"/>
20 <output name="output" file="EcR_USP_224.fa"/> 20 <output name="output" file="EcR_USP_224.fa"/>
21 </test> 21 </test>
22 </tests> 22 </tests>
23 <help><![CDATA[ 23 <help><![CDATA[
24 Places the reference genome sequence in the current history. 24 Places the galaxy instance pre-built genome index sequence in the current history.
25 Useful for sharing purposes or tools that work directly on fasta files. 25 Useful for sharing purposes or tools that work directly on fasta files.
26 ]]></help> 26 ]]></help>
27 <citations> 27 <citations>
28 <citation type="doi">10.1186/gb-2010-11-8-r86</citation> 28 <citation type="doi">10.1186/gb-2010-11-8-r86</citation>
29 </citations> 29 </citations>