Mercurial > repos > artbio > gsc_center_scale

diff center_scale.xml @ 1:a96cc346819c draft

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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/gsc_center_scale commit 7865eb7eb9d862e9967fe519d28df705d973fbaf
author artbio
date Fri, 12 Jul 2019 11:44:50 -0400
parents bcbd7179d8ec
children 163befe5f05b
line wrap: on
line diff
--- a/center_scale.xml	Thu Jul 11 13:31:20 2019 -0400
+++ b/center_scale.xml	Fri Jul 12 11:44:50 2019 -0400
@@ -1,4 +1,4 @@
-<tool id="center_scale" name="Center or scale (standardize) data" version="0.9.0">
+<tool id="center_scale" name="Center or scale (standardize) data" version="0.9.5">
     <description></description>
     <requirements>
         <requirement type="package" version="1.6.0">r-optparse</requirement>
@@ -45,27 +45,47 @@
     </outputs>
     <tests>
         <test>
-            <param name="input" value="mini.data.counts.tsv" ftype="tabular"/>
+            <param name="input" value="fulldata.tsv" ftype="tabular"/>
+            <param name="scale" value="TRUE"/>
+            <param name="center" value="TRUE"/>
             <output name="output" file="full_standardize.tab" ftype="tabular"/>
         </test>
         <test>
-            <param name="input" value="mini.data.counts.tsv" ftype="tabular"/>
+            <param name="input" value="fulldata.tsv" ftype="tabular"/>
             <param name="scale" value="FALSE"/>
+            <param name="center" value="TRUE"/>
             <output name="output" file="full_center.tab" ftype="tabular"/>
         </test>
         <test>
-            <param name="input" value="mini.data.counts.tsv" ftype="tabular" />
+            <param name="input" value="fulldata.tsv" ftype="tabular"/>
+            <param name="scale" value="TRUE"/>
+            <param name="center" value="FALSE"/>
+            <output name="output" file="full_scale.tab" ftype="tabular"/>
+        </test>
+        <test>
+            <param name="input" value="fulldata.tsv" ftype="tabular" />
+            <param name="scale" value="TRUE"/>
+            <param name="center" value="TRUE"/>
             <param name="factor_options" value="TRUE" />
-            <param name="file" value="mini.data.factor.tsv" ftype="tabular" />          
+            <param name="file" value="fulldata.map.tsv" ftype="tabular" />          
             <output name="output" file="group_standardize.tab" ftype="tabular"/>
         </test>
         <test>
-            <param name="input" value="mini.data.counts.tsv" ftype="tabular" />
+            <param name="input" value="fulldata.tsv" ftype="tabular" />
             <param name="scale" value="FALSE"/>
+            <param name="center" value="TRUE"/>
             <param name="factor_options" value="TRUE" />
-            <param name="file" value="mini.data.factor.tsv" ftype="tabular" />          
+            <param name="file" value="fulldata.map.tsv" ftype="tabular" />          
             <output name="output" file="group_center.tab" ftype="tabular"/>
         </test>
+        <test>
+            <param name="input" value="fulldata.tsv" ftype="tabular" />
+            <param name="scale" value="TRUE"/>
+            <param name="center" value="FALSE"/>
+            <param name="factor_options" value="TRUE" />
+            <param name="file" value="fulldata.map.tsv" ftype="tabular" />          
+            <output name="output" file="group_scale.tab" ftype="tabular"/>
+        </test>
     </tests>
     <help>