Mercurial > repos > artbio > gsc_mannwhitney_de

comparison mannwhitney_de.xml @ 3:3d86c89f15bf draft

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"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/gsc_mannwhitney_de commit fab41058cef186159d746c55808d0e69f252af2f"
author artbio
date Thu, 29 Aug 2019 05:35:04 -0400
parents 60964af87364
children 6916ac5a9ef0
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2:60964af87364 3:3d86c89f15bf
1 <tool id="mannwhitney_de" name="Perform a differential analysis" version="0.9.2"> 1 <tool id="mannwhitney_de" name="Perform a differential analysis" version="0.9.4">
2 <description>using a Mann-Whitney test</description> 2 <description>using a Mann-Whitney test</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="1.3.2=r3.3.2_0">r-optparse</requirement> 4 <requirement type="package" version="1.3.2=r3.3.2_0">r-optparse</requirement>
5 </requirements> 5 </requirements>
6 <stdio> 6 <stdio>
118 mean_factor1 mean expression across cells of the first group (of log transformed expression values) 118 mean_factor1 mean expression across cells of the first group (of log transformed expression values)
119 fold_change mean_factor1 - mean_factor2 (difference of log) 119 fold_change mean_factor1 - mean_factor2 (difference of log)
120 statistic W statistic of Mann-Whitney test 120 statistic W statistic of Mann-Whitney test
121 p.value p-value of Mann-Whitney test 121 p.value p-value of Mann-Whitney test
122 p.adjust p-values adjusted from the BH correction 122 p.adjust p-values adjusted from the BH correction
123 Significant TRUE/FALSE vector (if p-adjust inferior to FDR cut-off then the value is TRUE) 123 Significant if p-adjust superior to FDR cut-off then the value is *NS*, if inferior then it's either *UP* or *DOWN* depending on the sign of fold change
124 ==================== ====================================================================================================== 124 ==================== ======================================================================================================
125 125
126 </help> 126 </help>
127 <citations> 127 <citations>
128 <citation type="bibtex"> 128 <citation type="bibtex">