Mercurial > repos > artbio > gsc_mannwhitney_de

comparison mannwhitney_de.xml @ 4:6916ac5a9ef0 draft

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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/main/tools/gsc_mannwhitney_de commit c394391dcf541d91ee1dfdc0c3d80cd7a21942ff
author artbio
date Thu, 30 Nov 2023 02:03:53 +0000
parents 3d86c89f15bf
children a7eb04240b8b
comparison
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3:3d86c89f15bf 4:6916ac5a9ef0
1 <tool id="mannwhitney_de" name="Perform a differential analysis" version="0.9.4"> 1 <tool id="mannwhitney_de" name="Perform a differential analysis" version="4.1.3+galaxy0">
2 <description>using a Mann-Whitney test</description> 2 <description>using a Mann-Whitney test</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="1.3.2=r3.3.2_0">r-optparse</requirement> 4 <requirement type="package" version="1.7.1">r-optparse</requirement>
5 </requirements> 5 </requirements>
6 <stdio> 6 <stdio>
7 <exit_code range="1:" level="fatal" description="Tool exception" /> 7 <exit_code range="1:" level="fatal" description="Tool exception" />
8 </stdio> 8 </stdio>
9 <command detect_errors="exit_code"><![CDATA[ 9 <command detect_errors="exit_code"><![CDATA[
46 <outputs> 46 <outputs>
47 <data name="output" format="tabular" label="Results of Mann-Whitney differential analysis of ${on_string}" /> 47 <data name="output" format="tabular" label="Results of Mann-Whitney differential analysis of ${on_string}" />
48 </outputs> 48 </outputs>
49 <tests> 49 <tests>
50 <test> 50 <test>
51 <param name="input" value="filtered-0.05.tab" ftype="txt"/> 51 <param name="input" value="input.tsv" ftype="tabular"/>
52 <param name="sep" value="tab" /> 52 <param name="sep" value="tab" />
53 <param name="colnames" value="TRUE"/> 53 <param name="colnames" value="TRUE"/>
54 <param name="comparison_factor_file" value="signature_2columns.tsv" ftype="tabular"/> 54 <param name="comparison_factor_file" value="factor_2col.tsv" ftype="tabular"/>
55 <param name="factor1" value="LOW"/> 55 <param name="factor1" value="LOW"/>
56 <param name="factor2" value="HIGH"/> 56 <param name="factor2" value="HIGH"/>
57 <param name="fdr" value="0.01"/> 57 <param name="fdr" value="0.05"/>
58 <param name="log" value="true"/> 58 <param name="log" value="true"/>
59 <output name="output" file="geneMetadata_log.tsv" ftype="tabular"/> 59 <output name="output" file="result.tsv" ftype="tabular"/>
60 </test> 60 </test>
61 <test> 61 <test>
62 <param name="input" value="filtered-0.05.tab" ftype="txt"/> 62 <param name="input" value="input.csv" ftype="txt"/>
63 <param name="sep" value="tab" /> 63 <param name="sep" value="comma" />
64 <param name="colnames" value="TRUE"/> 64 <param name="colnames" value="TRUE"/>
65 <param name="comparison_factor_file" value="signature_3columns.tsv" ftype="tabular"/> 65 <param name="comparison_factor_file" value="factor_3col.tsv" ftype="tabular"/>
66 <param name="factor1" value="LOW"/> 66 <param name="factor1" value="LOW"/>
67 <param name="factor2" value="HIGH"/> 67 <param name="factor2" value="HIGH"/>
68 <param name="fdr" value="0.01"/> 68 <param name="fdr" value="0.05"/>
69 <param name="log" value="true"/> 69 <param name="log" value="true"/>
70 <output name="output" file="geneMetadata_log.tsv" ftype="tabular"/> 70 <output name="output" file="result_from_csv.tsv" ftype="tabular"/>
71 </test>
72 <test>
73 <param name="input" value="filterCells_100.tsv" ftype="txt"/>
74 <param name="sep" value="tab" />
75 <param name="colnames" value="TRUE"/>
76 <param name="comparison_factor_file" value="signature_2columns.tsv" ftype="tabular"/>
77 <param name="factor1" value="LOW"/>
78 <param name="factor2" value="HIGH"/>
79 <param name="fdr" value="0.01"/>
80 <param name="log" value="false"/>
81 <output name="output" file="geneMetadata_nolog.tsv" ftype="tabular"/>
82 </test> 71 </test>
83 </tests> 72 </tests>
84 <help> 73 <help>
85 74
86 **What it does** 75 **What it does**