Mercurial > repos > artbio > gsc_mannwhitney_de
comparison mannwhitney_de.xml @ 1:aef09ac6d0a5 draft
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/gsc_mannwhitney_de commit 06c8d40814f68cbf4d24b2ea70a11407bc40d072
| author | artbio |
|---|---|
| date | Mon, 24 Jun 2019 19:17:26 -0400 |
| parents | c67dba545a37 |
| children | 60964af87364 |
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| 0:c67dba545a37 | 1:aef09ac6d0a5 |
|---|---|
| 1 <tool id="mannwhitney_de" name="Perform a differential analysis" version="0.9.0"> | 1 <tool id="mannwhitney_de" name="Perform a differential analysis" version="0.9.1"> |
| 2 <description>using a Mann-Whitney test</description> | 2 <description>using a Mann-Whitney test</description> |
| 3 <requirements> | 3 <requirements> |
| 4 <requirement type="package" version="1.3.2=r3.3.2_0">r-optparse</requirement> | 4 <requirement type="package" version="1.3.2=r3.3.2_0">r-optparse</requirement> |
| 5 </requirements> | 5 </requirements> |
| 6 <stdio> | 6 <stdio> |
| 41 help="Reject H0 of no differential expression if adjusted p-values (Benjamini-Hochberg correction) is higher than the FDR cut-off."/> | 41 help="Reject H0 of no differential expression if adjusted p-values (Benjamini-Hochberg correction) is higher than the FDR cut-off."/> |
| 42 <param name="log" type="boolean" checked="false" label="Expression data are log-transformed" truevalue="--log" falsevalue=""/> | 42 <param name="log" type="boolean" checked="false" label="Expression data are log-transformed" truevalue="--log" falsevalue=""/> |
| 43 | 43 |
| 44 </inputs> | 44 </inputs> |
| 45 <outputs> | 45 <outputs> |
| 46 <data name="output" format="tabular" label="Results of Mann-Whitney differential analysis from ${on_string}" /> | 46 <data name="output" format="tabular" label="Results of Mann-Whitney differential analysis of ${on_string}" /> |
| 47 </outputs> | 47 </outputs> |
| 48 <tests> | 48 <tests> |
| 49 <test> | 49 <test> |
| 50 <param name="input" value="filtered-0.05.tab" ftype="txt"/> | 50 <param name="input" value="filtered-0.05.tab" ftype="txt"/> |
| 51 <param name="sep" value="tab" /> | 51 <param name="sep" value="tab" /> |