Mercurial > repos > artbio > gsc_mannwhitney_de

diff mannwhitney_de.xml @ 4:6916ac5a9ef0 draft

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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/main/tools/gsc_mannwhitney_de commit c394391dcf541d91ee1dfdc0c3d80cd7a21942ff
author artbio
date Thu, 30 Nov 2023 02:03:53 +0000
parents 3d86c89f15bf
children a7eb04240b8b
line wrap: on
line diff
--- a/mannwhitney_de.xml	Thu Aug 29 05:35:04 2019 -0400
+++ b/mannwhitney_de.xml	Thu Nov 30 02:03:53 2023 +0000
@@ -1,7 +1,7 @@
-<tool id="mannwhitney_de" name="Perform a differential analysis" version="0.9.4">
+<tool id="mannwhitney_de" name="Perform a differential analysis" version="4.1.3+galaxy0">
     <description>using a Mann-Whitney test</description>
     <requirements>
-        <requirement type="package" version="1.3.2=r3.3.2_0">r-optparse</requirement>
+        <requirement type="package" version="1.7.1">r-optparse</requirement>
     </requirements>
     <stdio>
         <exit_code range="1:" level="fatal" description="Tool exception" />
@@ -48,37 +48,26 @@
     </outputs>
     <tests>
         <test>
-            <param name="input" value="filtered-0.05.tab" ftype="txt"/>
-            <param name="sep" value="tab" />
-            <param name="colnames" value="TRUE"/>
-            <param name="comparison_factor_file" value="signature_2columns.tsv" ftype="tabular"/>
-            <param name="factor1" value="LOW"/>
-            <param name="factor2" value="HIGH"/>
-            <param name="fdr" value="0.01"/>
-            <param name="log" value="true"/>
-            <output name="output" file="geneMetadata_log.tsv" ftype="tabular"/>
-        </test>
-        <test>
-            <param name="input" value="filtered-0.05.tab" ftype="txt"/>
+            <param name="input" value="input.tsv" ftype="tabular"/>
             <param name="sep" value="tab" />
             <param name="colnames" value="TRUE"/>
-            <param name="comparison_factor_file" value="signature_3columns.tsv" ftype="tabular"/>
+            <param name="comparison_factor_file" value="factor_2col.tsv" ftype="tabular"/>
             <param name="factor1" value="LOW"/>
             <param name="factor2" value="HIGH"/>
-            <param name="fdr" value="0.01"/>
+            <param name="fdr" value="0.05"/>
             <param name="log" value="true"/>
-            <output name="output" file="geneMetadata_log.tsv" ftype="tabular"/>
+            <output name="output" file="result.tsv" ftype="tabular"/>
         </test>
         <test>
-            <param name="input" value="filterCells_100.tsv" ftype="txt"/>
-            <param name="sep" value="tab" />
+            <param name="input" value="input.csv" ftype="txt"/>
+            <param name="sep" value="comma" />
             <param name="colnames" value="TRUE"/>
-            <param name="comparison_factor_file" value="signature_2columns.tsv" ftype="tabular"/>
+            <param name="comparison_factor_file" value="factor_3col.tsv" ftype="tabular"/>
             <param name="factor1" value="LOW"/>
             <param name="factor2" value="HIGH"/>
-            <param name="fdr" value="0.01"/>
-            <param name="log" value="false"/>
-            <output name="output" file="geneMetadata_nolog.tsv" ftype="tabular"/>
+            <param name="fdr" value="0.05"/>
+            <param name="log" value="true"/>
+            <output name="output" file="result_from_csv.tsv" ftype="tabular"/>
         </test>
     </tests>
     <help>