# HG changeset patch
# User artbio
# Date 1561986328 14400
# Node ID 60964af87364fe918a9f09340b120753ecdeb31a
# Parent  aef09ac6d0a5fb7b7864b612d1df0e23bc2feecf
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/gsc_mannwhitney_de commit 9d570db083bd51751f4784dc367ee18aa0024ecd

diff -r aef09ac6d0a5 -r 60964af87364 mannwhitney_de.xml
--- a/mannwhitney_de.xml	Mon Jun 24 19:17:26 2019 -0400
+++ b/mannwhitney_de.xml	Mon Jul 01 09:05:28 2019 -0400
@@ -1,4 +1,4 @@
-<tool id="mannwhitney_de" name="Perform a differential analysis" version="0.9.1">
+<tool id="mannwhitney_de" name="Perform a differential analysis" version="0.9.2">
     <description>using a Mann-Whitney test</description>
     <requirements>
         <requirement type="package" version="1.3.2=r3.3.2_0">r-optparse</requirement>
@@ -34,7 +34,8 @@
             <option value="FALSE">No</option>
         </param>
         <param name="comparison_factor_file" type="data" format="tabular" label="Comparison factor table"
-               help="A tsv table file with two columns : cell identifiers and a column that split cells into two categories." />
+               help="A tsv table file with two columns : cell identifiers and a column that split cells into two categories.
+                     Other columns are ignored" />
         <param name="factor1" type="text" label="Condition-1. The first level (value) that the comparison factor can take." help="typical values could be 'LOW', 'wt', 't1', etc."/>
         <param name="factor2" type="text" label="Condition-2. The second level (value) that the comparison factor can take." help="typical values could be 'HIGH', 'mutant', 't2', etc."/>
         <param name="fdr" type="float" value="0.01" label="FDR threshold"
@@ -58,6 +59,17 @@
             <output name="output" file="geneMetadata_log.tsv" ftype="tabular"/>
         </test>
         <test>
+            <param name="input" value="filtered-0.05.tab" ftype="txt"/>
+            <param name="sep" value="tab" />
+            <param name="colnames" value="TRUE"/>
+            <param name="comparison_factor_file" value="signature_3columns.tsv" ftype="tabular"/>
+            <param name="factor1" value="LOW"/>
+            <param name="factor2" value="HIGH"/>
+            <param name="fdr" value="0.01"/>
+            <param name="log" value="true"/>
+            <output name="output" file="geneMetadata_log.tsv" ftype="tabular"/>
+        </test>
+        <test>
             <param name="input" value="filterCells_100.tsv" ftype="txt"/>
             <param name="sep" value="tab" />
             <param name="colnames" value="TRUE"/>
diff -r aef09ac6d0a5 -r 60964af87364 test-data/signature_3columns.tsv
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/signature_3columns.tsv	Mon Jul 01 09:05:28 2019 -0400
@@ -0,0 +1,101 @@
+cells	factor	add_column
+1001000173.B4	LOW	1001000173.B4
+1001000173.A2	LOW	1001000173.A2
+1001000173.E2	LOW	1001000173.E2
+1001000173.F6	LOW	1001000173.F6
+1001000173.B12	LOW	1001000173.B12
+1001000173.H1	HIGH	1001000173.H1
+1001000173.E4	HIGH	1001000173.E4
+1001000173.C2	LOW	1001000173.C2
+1001000173.F4	LOW	1001000173.F4
+1001000173.E10	HIGH	1001000173.E10
+1001000173.E6	LOW	1001000173.E6
+1001000173.C4	HIGH	1001000173.C4
+1001000173.B10	LOW	1001000173.B10
+1001000173.A7	LOW	1001000173.A7
+1001000173.B8	LOW	1001000173.B8
+1001000173.F9	LOW	1001000173.F9
+1001000173.G6	HIGH	1001000173.G6
+1001000173.A9	LOW	1001000173.A9
+1001000173.D2	HIGH	1001000173.D2
+1001000173.F2	LOW	1001000173.F2
+1001000173.H9	LOW	1001000173.H9
+1001000173.G1	LOW	1001000173.G1
+1001000173.B3	LOW	1001000173.B3
+1001000173.D7	HIGH	1001000173.D7
+1001000173.A12	LOW	1001000173.A12
+1001000173.C1	LOW	1001000173.C1
+1001000173.H7	HIGH	1001000173.H7
+1001000173.H5	LOW	1001000173.H5
+1001000173.G2	LOW	1001000173.G2
+1001000173.A3	LOW	1001000173.A3
+1001000173.D3	LOW	1001000173.D3
+1001000173.E1	LOW	1001000173.E1
+1001000173.G12	HIGH	1001000173.G12
+1001000173.C10	HIGH	1001000173.C10
+1001000173.C3	LOW	1001000173.C3
+1001000173.A5	LOW	1001000173.A5
+1001000173.G4	LOW	1001000173.G4
+1001000173.B11	LOW	1001000173.B11
+1001000173.G9	HIGH	1001000173.G9
+1001000173.F1	LOW	1001000173.F1
+1001000173.D8	LOW	1001000173.D8
+1001000173.E12	HIGH	1001000173.E12
+1001000173.F11	LOW	1001000173.F11
+1001000173.E5	LOW	1001000173.E5
+1001000173.G10	LOW	1001000173.G10
+1001000173.B9	LOW	1001000173.B9
+1001000173.C7	HIGH	1001000173.C7
+1001000173.B2	LOW	1001000173.B2
+1001000173.H4	LOW	1001000173.H4
+1001000174.G5	LOW	1001000174.G5
+1001000174.H9	LOW	1001000174.H9
+1001000174.A10	LOW	1001000174.A10
+1001000174.G10	HIGH	1001000174.G10
+1001000174.C8	LOW	1001000174.C8
+1001000174.F6	LOW	1001000174.F6
+1001000174.B4	LOW	1001000174.B4
+1001000174.H7	LOW	1001000174.H7
+1001000174.E10	HIGH	1001000174.E10
+1001000174.D5	LOW	1001000174.D5
+1001000174.E5	LOW	1001000174.E5
+1001000174.B11	LOW	1001000174.B11
+1001000174.F10	LOW	1001000174.F10
+1001000174.A5	LOW	1001000174.A5
+1001000174.B8	LOW	1001000174.B8
+1001000174.F2	LOW	1001000174.F2
+1001000174.F9	HIGH	1001000174.F9
+1001000174.F4	HIGH	1001000174.F4
+1001000174.B6	LOW	1001000174.B6
+1001000174.E2	LOW	1001000174.E2
+1001000174.G2	LOW	1001000174.G2
+1001000174.D8	LOW	1001000174.D8
+1001000174.H6	LOW	1001000174.H6
+1001000174.C3	HIGH	1001000174.C3
+1001000174.B7	LOW	1001000174.B7
+1001000174.A7	LOW	1001000174.A7
+1001000174.H10	LOW	1001000174.H10
+1001000174.F7	HIGH	1001000174.F7
+1001000174.A2	LOW	1001000174.A2
+1001000174.E4	LOW	1001000174.E4
+1001000174.D12	LOW	1001000174.D12
+1001000174.H4	LOW	1001000174.H4
+1001000174.C5	LOW	1001000174.C5
+1001000174.E9	LOW	1001000174.E9
+1001000174.D1	LOW	1001000174.D1
+1001000174.G4	LOW	1001000174.G4
+1001000174.G9	LOW	1001000174.G9
+1001000174.D4	HIGH	1001000174.D4
+1001000174.H11	HIGH	1001000174.H11
+1001000174.A9	LOW	1001000174.A9
+1001000174.A4	HIGH	1001000174.A4
+1001000174.C7	LOW	1001000174.C7
+1001000174.D11	LOW	1001000174.D11
+1001000174.F5	LOW	1001000174.F5
+1001000174.G6	LOW	1001000174.G6
+1001000174.D6	LOW	1001000174.D6
+1001000174.H3	LOW	1001000174.H3
+1001000174.F12	LOW	1001000174.F12
+1001000174.E6	LOW	1001000174.E6
+1001000174.G3	LOW	1001000174.G3
+1001000174.A8	LOW	1001000174.A8