Mercurial > repos > artbio > guppy_basecaller

comparison guppy_basecaller.xml @ 6:78d793671a9e draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/main/tools/guppy commit eb65a3ba03e7c4470f9ccc253c68a1a822bd46f4
author artbio
date Sun, 10 Dec 2023 15:06:44 +0000
parents dd0cccf3a62f
children
comparison
equal deleted inserted replaced
5:dd0cccf3a62f 6:78d793671a9e
1 <tool id="guppy-basecaller" name="Guppy basecaller wrapper" version="0.2.1" python_template_version="3.5"> 1 <tool id="guppy-basecaller" name="Guppy basecaller wrapper" version="0.2.2" python_template_version="3.8">
2 <description>A simple wrapper for guppy basecaller that depends on configuration files</description> 2 <description>A simple wrapper for guppy basecaller that depends on configuration files</description>
3 <requirements> 3 <requirements>
4 </requirements> 4 </requirements>
5 <command detect_errors="exit_code"><![CDATA[ 5 <command detect_errors="exit_code"><![CDATA[
6 6
30 <help><![CDATA[ 30 <help><![CDATA[
31 A wrapper for guppy basecaller. This expects two type of inputs: a collection of fast5 files, 31 A wrapper for guppy basecaller. This expects two type of inputs: a collection of fast5 files,
32 and a configuration in the form of a tar file. 32 and a configuration in the form of a tar file.
33 33
34 You can find configurations at https://github.com/nanoporetech/rerio, 34 You can find configurations at https://github.com/nanoporetech/rerio,
35 and in particular the directory https://github.com/nanoporetech/rerio/basecall_models. 35 and in particular the directory `nanoporetech/rerio/basecall_models`.
36 36
37 Each file there contains a URL you can download to use, for example 37 Each file there contains a URL you can download to use, for example
38 https://github.com/nanoporetech/rerio/blob/master/basecall_models/res_rna2_r941_min_flipflop_v001 38 https://github.com/nanoporetech/rerio/blob/master/basecall_models/res_rna2_r941_min_flipflop_v001
39 points to 'https://nanoporetech.box.com/shared/static/84e1jeudx8lr8ay7e9u1ebnvx3bk2kjf.tgz' 39 points to 'https://nanoporetech.box.com/shared/static/84e1jeudx8lr8ay7e9u1ebnvx3bk2kjf.tgz'
40 40