Mercurial > repos > artbio > guppy_basecaller

comparison guppy_basecaller.xml @ 2:cfc7ff08ad20 draft

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"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/guppy commit 0cb2fbf3fbafa26c5f2281d765d099ffe2598e5c"
author artbio
date Thu, 19 Nov 2020 00:20:32 +0000
parents 93b6cbff5ea4
children df3f2f852ed5
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1:93b6cbff5ea4 2:cfc7ff08ad20
1 <tool id="guppy-basecaller" name="Guppy basecaller wrapper" version="0.1.4" python_template_version="3.5"> 1 <tool id="guppy-basecaller" name="Guppy basecaller wrapper" version="0.1.5" python_template_version="3.5">
2 <description>A simple wrapper for guppy basecaller that depends on configuration files</description> 2 <description>A simple wrapper for guppy basecaller that depends on configuration files</description>
3 <requirements> 3 <requirements>
4 </requirements> 4 </requirements>
5 <command detect_errors="exit_code"><![CDATA[ 5 <command detect_errors="exit_code"><![CDATA[
6 6
23 <param name="infiles" type="data_collection" format="h5" label="Fast5 input (datatype h5)" multiple="true"/> 23 <param name="infiles" type="data_collection" format="h5" label="Fast5 input (datatype h5)" multiple="true"/>
24 <param name="config" type="data" format="tar" label="Guppy basecall configuration model"/> 24 <param name="config" type="data" format="tar" label="Guppy basecall configuration model"/>
25 </inputs> 25 </inputs>
26 <outputs> 26 <outputs>
27 <data name="guppy_result" format="fastq"> 27 <data name="guppy_result" format="fastq">
28 <discover_datasets directory="out/PASS" ext="fastq" pattern=".+\.fastq" visible="true"/> 28 <discover_datasets directory="out/pass" ext="fastq" pattern=".+\.fastq" visible="true"/>
29 </data> 29 </data>
30 </outputs> 30 </outputs>
31 <help><![CDATA[ 31 <help><![CDATA[
32 A wrapper for guppy basecaller. This expects two type of inputs: a collection of fast5 files, 32 A wrapper for guppy basecaller. This expects two type of inputs: a collection of fast5 files,
33 and a configuration in the form of a tar file. 33 and a configuration in the form of a tar file.