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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/main/tools/justdiff commit 97f29bbbd0f37d148e653bfcabe3efce1718c37e
author artbio
date Mon, 11 Dec 2023 00:01:55 +0000
parents 9299a59defda
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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294d9452c0d4 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/main/tools/justdiff commit 97f29bbbd0f37d148e653bfcabe3efce1718c37e
artbio
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1 <tool id="justdiff" name="Differences between two files" version="3.10+galaxy0">
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9299a59defda planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/justdiff commit 1ef8ddce2dd398b8328eb864295a3cfbe95087b3
artbio
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2 <description></description>
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294d9452c0d4 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/main/tools/justdiff commit 97f29bbbd0f37d148e653bfcabe3efce1718c37e
artbio
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3 <requirements>
294d9452c0d4 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/main/tools/justdiff commit 97f29bbbd0f37d148e653bfcabe3efce1718c37e
artbio
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4 <requirement type="package" version="3.10">diffutils</requirement>
294d9452c0d4 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/main/tools/justdiff commit 97f29bbbd0f37d148e653bfcabe3efce1718c37e
artbio
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5 </requirements>
294d9452c0d4 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/main/tools/justdiff commit 97f29bbbd0f37d148e653bfcabe3efce1718c37e
artbio
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294d9452c0d4 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/main/tools/justdiff commit 97f29bbbd0f37d148e653bfcabe3efce1718c37e
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9299a59defda planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/justdiff commit 1ef8ddce2dd398b8328eb864295a3cfbe95087b3
artbio
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8 <stdio>
9299a59defda planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/justdiff commit 1ef8ddce2dd398b8328eb864295a3cfbe95087b3
artbio
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9 <exit_code range="1:" level="fatal" description="Tool exception" />
9299a59defda planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/justdiff commit 1ef8ddce2dd398b8328eb864295a3cfbe95087b3
artbio
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10 </stdio>
9299a59defda planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/justdiff commit 1ef8ddce2dd398b8328eb864295a3cfbe95087b3
artbio
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11 <command detect_errors="exit_code"><![CDATA[
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294d9452c0d4 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/main/tools/justdiff commit 97f29bbbd0f37d148e653bfcabe3efce1718c37e
artbio
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12 diff --side-by-side --suppress-common-lines '${input1}' '${input2}' | cat > '$output'
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9299a59defda planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/justdiff commit 1ef8ddce2dd398b8328eb864295a3cfbe95087b3
artbio
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13 ]]></command>
9299a59defda planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/justdiff commit 1ef8ddce2dd398b8328eb864295a3cfbe95087b3
artbio
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14 <inputs>
9299a59defda planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/justdiff commit 1ef8ddce2dd398b8328eb864295a3cfbe95087b3
artbio
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15 <param format="txt" name="input1" type="data" label="first file" help="first file" />
9299a59defda planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/justdiff commit 1ef8ddce2dd398b8328eb864295a3cfbe95087b3
artbio
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16 <param format="txt" name="input2" type="data" label="second file" help="second file" />
9299a59defda planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/justdiff commit 1ef8ddce2dd398b8328eb864295a3cfbe95087b3
artbio
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17 </inputs>
9299a59defda planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/justdiff commit 1ef8ddce2dd398b8328eb864295a3cfbe95087b3
artbio
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18 <outputs>
9299a59defda planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/justdiff commit 1ef8ddce2dd398b8328eb864295a3cfbe95087b3
artbio
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19 <data name="output" format="txt" label="diff $input1.name | $input2.name" />
9299a59defda planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/justdiff commit 1ef8ddce2dd398b8328eb864295a3cfbe95087b3
artbio
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20 </outputs>
9299a59defda planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/justdiff commit 1ef8ddce2dd398b8328eb864295a3cfbe95087b3
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21 <tests>
9299a59defda planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/justdiff commit 1ef8ddce2dd398b8328eb864295a3cfbe95087b3
artbio
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22 <test>
9299a59defda planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/justdiff commit 1ef8ddce2dd398b8328eb864295a3cfbe95087b3
artbio
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23 <param name="input1" value="file1.txt" ftype="txt" />
9299a59defda planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/justdiff commit 1ef8ddce2dd398b8328eb864295a3cfbe95087b3
artbio
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24 <param name="input2" value="file2.txt" ftype="txt" />
9299a59defda planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/justdiff commit 1ef8ddce2dd398b8328eb864295a3cfbe95087b3
artbio
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25 <output name="output" file="diff.txt" ftype="txt"/>
9299a59defda planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/justdiff commit 1ef8ddce2dd398b8328eb864295a3cfbe95087b3
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26 </test>
9299a59defda planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/justdiff commit 1ef8ddce2dd398b8328eb864295a3cfbe95087b3
artbio
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27 </tests>
9299a59defda planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/justdiff commit 1ef8ddce2dd398b8328eb864295a3cfbe95087b3
artbio
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28 <help>
9299a59defda planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/justdiff commit 1ef8ddce2dd398b8328eb864295a3cfbe95087b3
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9299a59defda planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/justdiff commit 1ef8ddce2dd398b8328eb864295a3cfbe95087b3
artbio
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30 .. class:: infomark
9299a59defda planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/justdiff commit 1ef8ddce2dd398b8328eb864295a3cfbe95087b3
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9299a59defda planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/justdiff commit 1ef8ddce2dd398b8328eb864295a3cfbe95087b3
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32 **What it does**
9299a59defda planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/justdiff commit 1ef8ddce2dd398b8328eb864295a3cfbe95087b3
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294d9452c0d4 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/main/tools/justdiff commit 97f29bbbd0f37d148e653bfcabe3efce1718c37e
artbio
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34 Just returns the Unix-style **diff** between two files,
294d9452c0d4 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/main/tools/justdiff commit 97f29bbbd0f37d148e653bfcabe3efce1718c37e
artbio
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35 using options --side-by-side and --suppress-common-lines, to make easier difference search.
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9299a59defda planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/justdiff commit 1ef8ddce2dd398b8328eb864295a3cfbe95087b3
artbio
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36 </help>
9299a59defda planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/justdiff commit 1ef8ddce2dd398b8328eb864295a3cfbe95087b3
artbio
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37 </tool>
9299a59defda planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/justdiff commit 1ef8ddce2dd398b8328eb864295a3cfbe95087b3
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