Mercurial > repos > artbio > justgzip
view gzip.xml @ 0:401afd3c5220 draft
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/justgzip commit cb119427c41b729c90572c410f717282ad9cb8a7
author | artbio |
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date | Wed, 16 May 2018 12:59:10 -0400 |
parents | |
children | 32b19379cd25 |
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<tool id="justgzip" name="Gzip sequence datasets" version="0.1.0"> <description></description> <stdio> <exit_code range="1:" level="fatal" description="Tool exception" /> </stdio> <command detect_errors="exit_code"><![CDATA[ gzip -ck '${input1}' > $output ]]></command> <inputs> <param format="fastq" name="input1" type="data" label="Input file" help="file to compress" /> <param name="datatype" type="select" label="Input file datatype" help="Input file datatype" > <option value="sanger" >fastqsanger </option> <option value="illumina" >fastqillumina </option> <option value="fastq" selected="true" >fastq </option> </param> </inputs> <outputs> <data name="output" format="fastq.gz" label="$input1.name " > <change_format> <when input="datatype" value="sanger" format="fastqsanger.gz" /> <when input="datatype" value="illumina" format="fastqillumina.gz" /> </change_format> </data> </outputs> <tests> <test> <param name="input1" value="file1" ftype="fastq" /> <param name="datatype" value="fastq" /> <output name="output" file="file1.gz" decompress="True" ftype="fastq.gz"/> </test> <test> <param name="input1" value="file1" ftype="fastqsanger" /> <param name="datatype" value="sanger" /> <output name="output" file="file1.gz" decompress="True" ftype="fastqsanger.gz" /> </test> </tests> <help> .. class:: infomark **What it does** Just **gzip** fastq, fastqillumina and fastqsanger datasets. </help> </tool>