Mercurial > repos > artbio > lumpy_smoove

annotate test-data/test_vcf2hrdetect.vcf @ 6:ad8853ee9909 draft

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"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
author artbio
date Sun, 14 Feb 2021 23:59:42 +0000
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6
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
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1 ##fileformat=VCFv4.2
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
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2 ##FILTER=<ID=PASS,Description="All filters passed">
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
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3 ##fileDate=20201029
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
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4 ##reference=reference.fa
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
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5 ##INFO=<ID=SVTYPE,Number=1,Type=String,Description="Type of structural variant">
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
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6 ##INFO=<ID=SVLEN,Number=.,Type=Integer,Description="Difference in length between REF and ALT alleles">
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
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7 ##INFO=<ID=END,Number=1,Type=Integer,Description="End position of the variant described in this record">
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
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8 ##INFO=<ID=STRANDS,Number=.,Type=String,Description="Strand orientation of the adjacency in BEDPE format (DEL:+-, DUP:-+, INV:++/--)">
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
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9 ##INFO=<ID=IMPRECISE,Number=0,Type=Flag,Description="Imprecise structural variation">
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
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10 ##INFO=<ID=CIPOS,Number=2,Type=Integer,Description="Confidence interval around POS for imprecise variants">
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
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11 ##INFO=<ID=CIEND,Number=2,Type=Integer,Description="Confidence interval around END for imprecise variants">
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
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12 ##INFO=<ID=CIPOS95,Number=2,Type=Integer,Description="Confidence interval (95%) around POS for imprecise variants">
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
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13 ##INFO=<ID=CIEND95,Number=2,Type=Integer,Description="Confidence interval (95%) around END for imprecise variants">
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
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14 ##INFO=<ID=MATEID,Number=.,Type=String,Description="ID of mate breakends">
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
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15 ##INFO=<ID=EVENT,Number=1,Type=String,Description="ID of event associated to breakend">
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
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16 ##INFO=<ID=SECONDARY,Number=0,Type=Flag,Description="Secondary breakend in a multi-line variants">
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
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17 ##INFO=<ID=SU,Number=.,Type=Integer,Description="Number of pieces of evidence supporting the variant across all samples">
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
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18 ##INFO=<ID=PE,Number=.,Type=Integer,Description="Number of paired-end reads supporting the variant across all samples">
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
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19 ##INFO=<ID=SR,Number=.,Type=Integer,Description="Number of split reads supporting the variant across all samples">
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
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20 ##INFO=<ID=BD,Number=.,Type=Integer,Description="Amount of BED evidence supporting the variant across all samples">
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
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21 ##INFO=<ID=EV,Number=.,Type=String,Description="Type of LUMPY evidence contributing to the variant call">
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
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22 ##ALT=<ID=DEL,Description="Deletion">
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
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23 ##ALT=<ID=DUP,Description="Duplication">
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
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24 ##ALT=<ID=INV,Description="Inversion">
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
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25 ##ALT=<ID=DUP:TANDEM,Description="Tandem duplication">
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
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26 ##ALT=<ID=INS,Description="Insertion of novel sequence">
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
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27 ##ALT=<ID=CNV,Description="Copy number variable region">
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
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28 ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
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29 ##FORMAT=<ID=SU,Number=1,Type=Integer,Description="Number of pieces of evidence supporting the variant">
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
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30 ##FORMAT=<ID=PE,Number=1,Type=Integer,Description="Number of paired-end reads supporting the variant">
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
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31 ##FORMAT=<ID=SR,Number=1,Type=Integer,Description="Number of split reads supporting the variant">
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
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32 ##FORMAT=<ID=BD,Number=1,Type=Integer,Description="Amount of BED evidence supporting the variant">
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
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33 ##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype quality">
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
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34 ##FORMAT=<ID=SQ,Number=1,Type=Float,Description="Phred-scaled probability that this site is variant (non-reference in this sample">
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
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35 ##FORMAT=<ID=GL,Number=G,Type=Float,Description="Genotype Likelihood, log10-scaled likelihoods of the data given the called genotype for each possible genotype generated from the reference and alternate alleles given the sample ploidy">
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
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36 ##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read depth">
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
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37 ##FORMAT=<ID=RO,Number=1,Type=Integer,Description="Reference allele observation count, with partial observations recorded fractionally">
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
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38 ##FORMAT=<ID=AO,Number=A,Type=Integer,Description="Alternate allele observations, with partial observations recorded fractionally">
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
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39 ##FORMAT=<ID=QR,Number=1,Type=Integer,Description="Sum of quality of reference observations">
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
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40 ##FORMAT=<ID=QA,Number=A,Type=Integer,Description="Sum of quality of alternate observations">
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
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41 ##FORMAT=<ID=RS,Number=1,Type=Integer,Description="Reference allele split-read observation count, with partial observations recorded fractionally">
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
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42 ##FORMAT=<ID=AS,Number=A,Type=Integer,Description="Alternate allele split-read observation count, with partial observations recorded fractionally">
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
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43 ##FORMAT=<ID=ASC,Number=A,Type=Integer,Description="Alternate allele clipped-read observation count, with partial observations recorded fractionally">
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
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44 ##FORMAT=<ID=RP,Number=1,Type=Integer,Description="Reference allele paired-end observation count, with partial observations recorded fractionally">
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
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45 ##FORMAT=<ID=AP,Number=A,Type=Integer,Description="Alternate allele paired-end observation count, with partial observations recorded fractionally">
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
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46 ##FORMAT=<ID=AB,Number=A,Type=Float,Description="Allele balance, fraction of observations from alternate allele, QA/(QR+QA)">
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
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47 ##contig=<ID=1,length=249250621>
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
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48 ##contig=<ID=2,length=243199373>
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
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49 ##contig=<ID=3,length=198022430>
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
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50 ##contig=<ID=4,length=191154276>
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
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51 ##contig=<ID=5,length=180915260>
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
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52 ##contig=<ID=6,length=171115067>
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
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53 ##contig=<ID=7,length=159138663>
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
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54 ##contig=<ID=8,length=146364022>
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
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55 ##contig=<ID=9,length=141213431>
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
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56 ##contig=<ID=10,length=135534747>
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
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57 ##contig=<ID=11,length=135006516>
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
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58 ##contig=<ID=12,length=133851895>
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
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59 ##contig=<ID=13,length=115169878>
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
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60 ##contig=<ID=14,length=107349540>
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61 ##contig=<ID=15,length=102531392>
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62 ##contig=<ID=16,length=90354753>
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63 ##contig=<ID=17,length=81195210>
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
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64 ##contig=<ID=18,length=78077248>
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
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65 ##contig=<ID=19,length=59128983>
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
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66 ##contig=<ID=20,length=63025520>
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
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67 ##contig=<ID=21,length=48129895>
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
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68 ##contig=<ID=22,length=51304566>
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
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69 ##contig=<ID=X,length=155270560>
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
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70 ##contig=<ID=Y,length=59373566>
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
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71 ##contig=<ID=MT,length=16569>
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
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72 ##contig=<ID=GL000207.1,length=4262>
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
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73 ##contig=<ID=GL000226.1,length=15008>
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diff changeset
74 ##contig=<ID=GL000229.1,length=19913>
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
75 ##contig=<ID=GL000231.1,length=27386>
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
76 ##contig=<ID=GL000210.1,length=27682>
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
77 ##contig=<ID=GL000239.1,length=33824>
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
78 ##contig=<ID=GL000235.1,length=34474>
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
79 ##contig=<ID=GL000201.1,length=36148>
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
80 ##contig=<ID=GL000247.1,length=36422>
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
81 ##contig=<ID=GL000245.1,length=36651>
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
82 ##contig=<ID=GL000197.1,length=37175>
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
83 ##contig=<ID=GL000203.1,length=37498>
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
84 ##contig=<ID=GL000246.1,length=38154>
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
85 ##contig=<ID=GL000249.1,length=38502>
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
86 ##contig=<ID=GL000196.1,length=38914>
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
87 ##contig=<ID=GL000248.1,length=39786>
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
88 ##contig=<ID=GL000244.1,length=39929>
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
89 ##contig=<ID=GL000238.1,length=39939>
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
90 ##contig=<ID=GL000202.1,length=40103>
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
91 ##contig=<ID=GL000234.1,length=40531>
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
92 ##contig=<ID=GL000232.1,length=40652>
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
93 ##contig=<ID=GL000206.1,length=41001>
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
94 ##contig=<ID=GL000240.1,length=41933>
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
95 ##contig=<ID=GL000236.1,length=41934>
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
96 ##contig=<ID=GL000241.1,length=42152>
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
97 ##contig=<ID=GL000243.1,length=43341>
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
98 ##contig=<ID=GL000242.1,length=43523>
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
99 ##contig=<ID=GL000230.1,length=43691>
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
100 ##contig=<ID=GL000237.1,length=45867>
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
101 ##contig=<ID=GL000233.1,length=45941>
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
102 ##contig=<ID=GL000204.1,length=81310>
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
103 ##contig=<ID=GL000198.1,length=90085>
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
104 ##contig=<ID=GL000208.1,length=92689>
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
105 ##contig=<ID=GL000191.1,length=106433>
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
106 ##contig=<ID=GL000227.1,length=128374>
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
107 ##contig=<ID=GL000228.1,length=129120>
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
108 ##contig=<ID=GL000214.1,length=137718>
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
109 ##contig=<ID=GL000221.1,length=155397>
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
110 ##contig=<ID=GL000209.1,length=159169>
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
111 ##contig=<ID=GL000218.1,length=161147>
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
112 ##contig=<ID=GL000220.1,length=161802>
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
113 ##contig=<ID=GL000213.1,length=164239>
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
114 ##contig=<ID=GL000211.1,length=166566>
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
115 ##contig=<ID=GL000199.1,length=169874>
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
116 ##contig=<ID=GL000217.1,length=172149>
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
117 ##contig=<ID=GL000216.1,length=172294>
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
118 ##contig=<ID=GL000215.1,length=172545>
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
119 ##contig=<ID=GL000205.1,length=174588>
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
120 ##contig=<ID=GL000219.1,length=179198>
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
121 ##contig=<ID=GL000224.1,length=179693>
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
122 ##contig=<ID=GL000223.1,length=180455>
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
123 ##contig=<ID=GL000195.1,length=182896>
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
124 ##contig=<ID=GL000212.1,length=186858>
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
125 ##contig=<ID=GL000222.1,length=186861>
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
126 ##contig=<ID=GL000200.1,length=187035>
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
127 ##contig=<ID=GL000193.1,length=189789>
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
128 ##contig=<ID=GL000194.1,length=191469>
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
129 ##contig=<ID=GL000225.1,length=211173>
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
130 ##contig=<ID=GL000192.1,length=547496>
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
131 ##smoove_version=0.2.5
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
132 ##smoove_count_stats=TARGET-21-PAMXZY-15A-01D:0,646270,0,297568
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
133 ##smoove_count_stats=TARGET-21-PAMXZY-09A-03D:0,504761,0,141470
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
134 ##source=LUMPY
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
135 ##bcftools_annotateVersion=1.10.2+htslib-1.10.2
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
136 ##bcftools_annotateCommand=annotate -x INFO/PRPOS,INFO/PREND -Ou; Date=Thu Oct 29 18:30:42 2020
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
137 ##INFO=<ID=AC,Number=A,Type=Integer,Description="Allele count in genotypes">
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
138 ##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in called genotypes">
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
139 ##bcftools_viewVersion=1.10.2+htslib-1.10.2
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
140 ##bcftools_viewCommand=view -c 1 -Oz -c 1 -o output-smoove.genotyped.vcf.gz; Date=Thu Oct 29 18:30:42 2020
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
141 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT TARGET-21-PAMXZY-15A-01D TARGET-21-PAMXZY-09A-03D
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
142 1 14436660 4 N <DUP> 40.38 . SVTYPE=DUP;SVLEN=1903;END=14438563;STRANDS=-+:11;IMPRECISE;CIPOS=-219,29;CIEND=-30,224;CIPOS95=-93,4;CIEND95=-4,95;SU=11;PE=11;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:19:0.05:-0,-2,-4:21:21:0:21:0:21:0:0:0:0:0 0/1:40:40.33:-7,-3,-8:110:98:11:97:10:44:0:0:53:10:0.093
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
143 1 28515659 1971_1 N N]19:24027918] 194.49 . SVTYPE=BND;STRANDS=++:12;IMPRECISE;CIPOS=-24,212;CIEND=-30,228;CIPOS95=-4,93;CIEND95=-4,73;MATEID=1971_2;EVENT=1971;SU=12;PE=12;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:162:0:-0,-16,-54:56:55:0:54:0:23:0:0:31:0:0 0/1:194:194.49:-27,-8,-47:76:61:14:61:14:0:0:0:61:14:0.19
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
144 1 42552553 1942_1 N N[4:44842163[ 59.54 . SVTYPE=BND;STRANDS=+-:7;IMPRECISE;CIPOS=-15,285;CIEND=-238,29;CIPOS95=-1,137;CIEND95=-86,5;MATEID=1942_2;EVENT=1942;SU=7;PE=7;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:57:0:-3,-9,-34:40:37:2:37:2:0:0:0:37:2:0.051 0/1:59:59.54:-16,-10,-51:71:61:9:61:9:0:0:0:61:9:0.13
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
145 1 43694066 15 N <DEL> 353.17 . SVTYPE=DEL;SVLEN=-1472;END=43695538;STRANDS=+-:26;IMPRECISE;CIPOS=-30,203;CIEND=-202,29;CIPOS95=-7,39;CIEND95=-55,4;SU=26;PE=26;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:60:0:-5,-11,-43:52:48:4:47:3:23:0:1:24:2:0.06 0/1:200:353.17:-47,-11,-74:124:99:24:98:24:47:0:2:51:22:0.2
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
146 1 44059282 17_1 N N]1:44059890] 50.66 . SVTYPE=BND;STRANDS=++:11;IMPRECISE;CIPOS=-30,193;CIEND=-30,225;CIPOS95=-7,65;CIEND95=-4,94;MATEID=17_2;EVENT=17;SU=11;PE=11;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:36:0:-3,-7,-27:33:30:2:30:2:0:0:0:30:2:0.062 0/1:50:50.65:-13,-8,-38:54:46:7:46:7:0:0:0:46:7:0.13
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
147 1 44059890 17_2 N N]1:44059282] 50.66 . SVTYPE=BND;STRANDS=++:11;IMPRECISE;CIPOS=-30,225;CIEND=-30,193;CIPOS95=-4,94;CIEND95=-7,65;MATEID=17_1;EVENT=17;SECONDARY;SU=11;PE=11;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:36:0:-3,-7,-27:33:30:2:30:2:0:0:0:30:2:0.062 0/1:50:50.65:-13,-8,-38:54:46:7:46:7:0:0:0:46:7:0.13
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
148 1 64897140 1952_1 N [6:159204434[N 35.75 . SVTYPE=BND;STRANDS=--:6;IMPRECISE;CIPOS=-289,21;CIEND=-250,29;CIPOS95=-137,3;CIEND95=-106,5;MATEID=1952_2;EVENT=1952;SU=6;PE=6;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:75:0:-0,-8,-25:27:26:0:25:0:9:0:0:16:0:0 0/1:35:35.75:-9,-6,-28:39:33:5:33:5:0:0:0:33:5:0.13
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
149 1 66804423 1961_1 N [13:59377693[N 23.75 . SVTYPE=BND;STRANDS=--:6;IMPRECISE;CIPOS=-294,16;CIEND=-240,29;CIPOS95=-142,1;CIEND95=-83,5;MATEID=1961_2;EVENT=1961;SU=6;PE=6;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:12:0.25:-5,-6,-27:35:31:3:31:3:0:0:0:31:3:0.088 0/1:23:23.49:-16,-13,-62:83:73:9:73:9:0:0:0:73:9:0.11
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
150 1 80221789 47 N <DEL> 116.67 . SVTYPE=DEL;SVLEN=-1243;END=80223032;STRANDS=+-:12;IMPRECISE;CIPOS=-30,178;CIEND=-194,29;CIPOS95=-5,42;CIEND95=-47,8;SU=12;PE=12;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:24:0.02:-5,-8,-31:40:36:4:35:3:13:0:0:22:3:0.079 0/1:116:116.66:-18,-6,-33:52:42:9:42:9:0:0:0:42:9:0.18
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
151 1 80794627 48_1 N [1:80795137[N 41.32 . SVTYPE=BND;STRANDS=--:17;IMPRECISE;CIPOS=-193,21;CIEND=-179,21;CIPOS95=-79,2;CIEND95=-65,2;MATEID=48_2;EVENT=48;SU=17;PE=17;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:45:0:-5,-9,-38:46:42:3:42:3:0:0:0:42:3:0.067 0/1:41:41.32:-21,-17,-79:107:94:12:94:12:0:0:0:94:12:0.11
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
152 1 80795137 48_2 N [1:80794627[N 41.32 . SVTYPE=BND;STRANDS=--:17;IMPRECISE;CIPOS=-179,21;CIEND=-193,21;CIPOS95=-65,2;CIEND95=-79,2;MATEID=48_1;EVENT=48;SECONDARY;SU=17;PE=17;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:45:0:-5,-9,-38:46:42:3:42:3:0:0:0:42:3:0.067 0/1:41:41.32:-21,-17,-79:107:94:12:94:12:0:0:0:94:12:0.11
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
153 1 91151631 1956_1 N N[8:85437297[ 53.53 . SVTYPE=BND;STRANDS=+-:10;IMPRECISE;CIPOS=-25,239;CIEND=-237,25;CIPOS95=-3,111;CIEND95=-101,2;MATEID=1956_2;EVENT=1956;SU=10;PE=10;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:171:0:-0,-17,-57:59:58:0:57:0:30:0:0:27:0:0 0/1:53:53.53:-16,-11,-52:73:63:9:63:9:0:0:0:63:9:0.12
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
154 1 92232065 60 N <DEL> 35.11 . SVTYPE=DEL;SVLEN=-1297;END=92233362;STRANDS=+-:17;IMPRECISE;CIPOS=-30,298;CIEND=-197,15;CIPOS95=-4,80;CIEND95=-82,4;SU=17;PE=17;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:69:0:-5,-12,-46:55:51:3:50:3:24:0:1:26:2:0.057 0/1:35:35.11:-25,-22,-104:140:124:15:123:15:66:0:2:57:13:0.11
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
155 1 105428633 1954_1 N N[7:93357413[ 104.7 . SVTYPE=BND;STRANDS=+-:9;IMPRECISE;CIPOS=-21,258;CIEND=-225,29;CIPOS95=-2,129;CIEND95=-93,4;MATEID=1954_2;EVENT=1954;SU=9;PE=9;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:102:0:-0,-10,-34:36:35:0:34:0:16:0:0:18:0:0 0/1:104:104.7:-16,-5,-29:46:37:8:37:8:0:0:0:37:8:0.18
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
156 1 119401195 1963_1 N N[15:51189306[ 41.32 . SVTYPE=BND;STRANDS=+-:14;IMPRECISE;CIPOS=-30,271;CIEND=-192,29;CIPOS95=-3,87;CIEND95=-71,6;MATEID=1963_2;EVENT=1963;SU=14;PE=14;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:60:0:-5,-11,-43:51:47:3:47:3:0:0:0:47:3:0.06 0/1:41:41.32:-21,-17,-79:107:94:12:94:12:0:0:0:94:12:0.11
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
157 1 168024578 1972_1 N ]19:24033135]N 4.57 . SVTYPE=BND;STRANDS=-+:8;IMPRECISE;CIPOS=-274,18;CIEND=-30,210;CIPOS95=-129,2;CIEND95=-6,75;MATEID=1972_2;EVENT=1972;SU=8;PE=8;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:27:0.01:-2,-4,-17:20:18:1:18:1:0:0:0:18:1:0.053 0/1:2:4.56:-9,-8,-38:50:44:5:44:5:0:0:0:44:5:0.1
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
158 1 221827800 1962_1 N N[13:61315891[ 53.72 . SVTYPE=BND;STRANDS=+-:6;IMPRECISE;CIPOS=-30,271;CIEND=-349,29;CIPOS95=-3,117;CIEND95=-139,3;MATEID=1962_2;EVENT=1962;SU=6;PE=6;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:81:0:-0,-8,-27:28:28:0:27:0:14:0:0:13:0:0 0/1:53:53.72:-11,-6,-30:43:36:6:36:6:0:0:0:36:6:0.14
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
159 1 234805693 1969_1 N N[16:59323740[ 20.7 . SVTYPE=BND;STRANDS=+-:7;IMPRECISE;CIPOS=-30,282;CIEND=-347,29;CIPOS95=-4,98;CIEND95=-138,1;MATEID=1969_2;EVENT=1969;SU=7;PE=7;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:138:0:-0,-14,-46:47:47:0:46:0:24:0:0:22:0:0 0/1:20:20.7:-11,-9,-40:54:47:6:47:6:0:0:0:47:6:0.11
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
160 2 12019022 1982_1 N N]7:52399206] 14.67 . SVTYPE=BND;STRANDS=++:9;IMPRECISE;CIPOS=-30,221;CIEND=-19,261;CIPOS95=-2,91;CIEND95=-2,131;MATEID=1982_2;EVENT=1982;SU=9;PE=9;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:200:0:-0,-24,-80:81:81:0:80:0:41:0:0:39:0:0 0/1:14:14.67:-14,-12,-57:76:67:8:67:8:0:0:0:67:8:0.11
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
161 2 18118870 172 N <DEL> 233.63 . SVTYPE=DEL;SVLEN=-1161;END=18120031;STRANDS=+-:19;IMPRECISE;CIPOS=-22,175;CIEND=-220,29;CIPOS95=-4,69;CIEND95=-53,7;SU=19;PE=19;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:18:0.06:-5,-7,-29:37:33:3:33:3:0:0:0:33:3:0.083 0/1:200:233.57:-29,-5,-35:63:48:14:48:14:0:0:0:48:14:0.23
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
162 2 19002880 174 N <DEL> 170.16 . SVTYPE=DEL;SVLEN=-507;END=19003387;STRANDS=+-:20;IMPRECISE;CIPOS=-28,161;CIEND=-255,29;CIPOS95=-6,55;CIEND95=-64,3;SU=20;PE=20;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:0:2.85:-9,-9,-39:53:46:6:45:5:23:0:0:22:5:0.1 0/1:167:167.31:-30,-13,-70:106:89:16:88:16:44:0:3:44:13:0.15
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
163 2 34797601 185 N <DEL> 212.66 . SVTYPE=DEL;SVLEN=-3978;END=34801579;STRANDS=+-:14;IMPRECISE;CIPOS=-30,217;CIEND=-207,29;CIPOS95=-4,59;CIEND95=-57,7;SU=14;PE=14;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:51:0:-2,-7,-25:28:26:1:26:1:0:0:0:26:1:0.037 0/1:200:212.66:-25,-4,-27:50:37:12:37:12:0:0:0:37:12:0.24
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
164 2 34965732 186 N <DEL> 182.15 . SVTYPE=DEL;SVLEN=-1529;END=34967261;STRANDS=+-:20;IMPRECISE;CIPOS=-30,197;CIEND=-288,29;CIPOS95=-4,42;CIEND95=-76,2;SU=20;PE=20;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:66:0:-8,-15,-60:74:68:6:67:5:40:0:2:27:3:0.069 0/1:182:182.15:-35,-16,-88:132:111:20:110:19:55:0:4:55:15:0.15
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
165 2 48990532 193 N <DEL> 135.43 . SVTYPE=DEL;SVLEN=-659;END=48991191;STRANDS=+-:17;IMPRECISE;CIPOS=-29,179;CIEND=-264,29;CIPOS95=-3,64;CIEND95=-60,6;SU=17;PE=17;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:6:0.93:-5,-6,-25:33:29:3:29:3:0:0:0:29:3:0.094 0/1:134:134.5:-23,-9,-50:76:63:12:63:12:0:0:0:63:12:0.16
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
166 2 76773562 204 N <DEL> 320.17 . SVTYPE=DEL;SVLEN=-1882;END=76775444;STRANDS=+-:21;IMPRECISE;CIPOS=-30,145;CIEND=-240,29;CIPOS95=-7,44;CIEND95=-57,3;SU=21;PE=21;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:30:0:-8,-11,-48:63:56:6:55:5:31:0:2:24:3:0.083 0/1:200:320.17:-44,-12,-76:125:101:24:100:23:54:0:6:46:17:0.19
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
167 2 77358259 2004_1 N N[18:59713754[ 4.44 . SVTYPE=BND;STRANDS=+-:11;IMPRECISE;CIPOS=-19,255;CIEND=-216,28;CIPOS95=-3,122;CIEND95=-83,4;MATEID=2004_2;EVENT=2004;SU=11;PE=11;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:27:0.01:-3,-6,-24:30:27:2:27:2:0:0:0:27:2:0.069 0/1:2:4.43:-14,-13,-61:80:71:8:71:8:0:0:0:71:8:0.1
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
168 2 78091959 1979_1 N [4:174044216[N 38.57 . SVTYPE=BND;STRANDS=--:11;IMPRECISE;CIPOS=-245,12;CIEND=-186,29;CIPOS95=-112,1;CIEND95=-64,6;MATEID=1979_2;EVENT=1979;SU=11;PE=11;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:54:0:-2,-7,-26:29:27:1:27:1:0:0:0:27:1:0.036 0/1:38:38.57:-14,-10,-50:68:59:8:59:8:0:0:0:59:8:0.12
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
169 2 120417073 234 N <DUP> 52.37 . SVTYPE=DUP;SVLEN=1381;END=120418454;STRANDS=-+:12;IMPRECISE;CIPOS=-331,29;CIEND=-30,171;CIPOS95=-119,3;CIEND95=-4,52;SU=12;PE=12;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:74:0:-0,-8,-14:82:81:0:80:0:40:0:0:40:0:0 0/1:44:52.37:-7,-2,-7:95:84:10:84:10:0:0:0:84:10:0.11
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
170 2 125766561 239 N <DUP> 52.69 . SVTYPE=DUP;SVLEN=1838;END=125768399;STRANDS=-+:13;IMPRECISE;CIPOS=-186,29;CIEND=-30,312;CIPOS95=-70,6;CIEND95=-3,105;SU=13;PE=13;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:33:0:-2,-5,-12:98:93:5:92:4:46:0:3:46:1:0.042 0/1:52:52.69:-10,-5,-15:186:169:17:168:16:82:0:5:86:11:0.087
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
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171 2 153997618 2002_1 N N[17:74377266[ 23.44 . SVTYPE=BND;STRANDS=+-:14;IMPRECISE;CIPOS=-30,176;CIEND=-220,20;CIPOS95=-6,60;CIEND95=-101,2;MATEID=2002_2;EVENT=2002;SU=14;PE=14;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:27:0.01:-5,-8,-32:40:36:3:36:3:0:0:0:36:3:0.077 0/1:23:23.43:-17,-15,-70:93:82:10:82:10:0:0:0:82:10:0.11
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
172 2 156774338 269 N <DEL> 8.81 . SVTYPE=DEL;SVLEN=-1918;END=156776256;STRANDS=+-:16;IMPRECISE;CIPOS=-30,291;CIEND=-186,29;CIPOS95=-2,86;CIEND95=-73,5;SU=16;PE=16;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:30:0:-8,-11,-48:62:56:6:55:5:30:0:2:25:3:0.083 0/1:8:8.8:-22,-21,-97:129:115:14:114:13:58:0:2:56:11:0.1
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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173 2 160095376 272_1 N [2:160095824[N 47.58 . SVTYPE=BND;STRANDS=--:17;IMPRECISE;CIPOS=-256,29;CIEND=-227,29;CIPOS95=-58,5;CIEND95=-84,4;MATEID=272_2;EVENT=272;SU=17;PE=17;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:12:0.25:-7,-8,-35:45:40:4:40:4:0:0:0:40:4:0.091 0/1:47:47.33:-21,-16,-77:105:92:12:92:12:0:0:0:92:12:0.12
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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174 2 160095824 272_2 N [2:160095376[N 47.58 . SVTYPE=BND;STRANDS=--:17;IMPRECISE;CIPOS=-227,29;CIEND=-256,29;CIPOS95=-84,4;CIEND95=-58,5;MATEID=272_1;EVENT=272;SECONDARY;SU=17;PE=17;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:12:0.25:-7,-8,-35:45:40:4:40:4:0:0:0:40:4:0.091 0/1:47:47.33:-21,-16,-77:105:92:12:92:12:0:0:0:92:12:0.12
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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175 2 178351450 2007_1 N [19:52567370[N 56.6 . SVTYPE=BND;STRANDS=--:10;IMPRECISE;CIPOS=-283,29;CIEND=-244,28;CIPOS95=-100,4;CIEND95=-104,2;MATEID=2007_2;EVENT=2007;SU=10;PE=10;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:45:0:-2,-6,-23:26:24:1:24:1:0:0:0:24:1:0.04 0/1:56:56.6:-15,-9,-44:62:53:8:53:8:0:0:0:53:8:0.13
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
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176 2 178351470 2006_1 N N]19:52567638] 110.71 . SVTYPE=BND;STRANDS=++:10;IMPRECISE;CIPOS=-30,147;CIEND=-30,187;CIPOS95=-4,36;CIEND95=-6,54;MATEID=2006_2;EVENT=2006;SU=10;PE=10;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:84:0:-0,-8,-28:30:29:0:28:0:11:0:0:17:0:0 0/1:110:110.71:-16,-5,-27:44:35:8:35:8:0:0:0:35:8:0.19
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
177 2 179315148 295 N <DEL> 82.7 . SVTYPE=DEL;SVLEN=-541;END=179315689;STRANDS=+-:28;IMPRECISE;CIPOS=-22,156;CIEND=-244,29;CIPOS95=-4,69;CIEND95=-48,3;SU=28;PE=28;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:99:0:-6,-16,-63:75:70:5:69:4:36:0:0:33:4:0.055 0/1:82:82.7:-39,-31,-150:205:180:24:179:23:93:0:0:86:23:0.11
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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178 2 189119618 306 N <DEL> 515.59 . SVTYPE=DEL;SVLEN=-1361;END=189120979;STRANDS=+-:14;IMPRECISE;CIPOS=-23,182;CIEND=-188,29;CIPOS95=-3,67;CIEND95=-72,3;SU=14;PE=14;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:21:0.03:-0,-2,-7:7:7:0:7:0:7:0:0:0:0:0 0/1:185:515.55:-53,-2,-20:59:35:24:35:23:13:0:9:22:14:0.4
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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179 2 204273805 1977_1 N N]4:68944782] 62.68 . SVTYPE=BND;STRANDS=++:6;IMPRECISE;CIPOS=-30,269;CIEND=-30,257;CIPOS95=-4,116;CIEND95=-3,96;MATEID=1977_2;EVENT=1977;SU=6;PE=6;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:84:0:-0,-8,-28:30:29:0:28:0:15:0:0:13:0:0 0/1:62:62.68:-13,-7,-34:50:42:7:42:7:0:0:0:42:7:0.14
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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180 3 12818457 2017_1 N N[5:144122990[ 90.24 . SVTYPE=BND;STRANDS=+-:10;IMPRECISE;CIPOS=-30,240;CIEND=-248,26;CIPOS95=-6,73;CIEND95=-117,3;MATEID=2017_2;EVENT=2017;SU=10;PE=10;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:9:0.51:-2,-3,-11:14:12:1:12:1:0:0:0:12:1:0.077 0/1:89:89.73:-14,-5,-26:41:33:7:33:7:0:0:0:33:7:0.17
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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181 3 32203783 365 N <DEL> 7.56 . SVTYPE=DEL;SVLEN=-370;END=32204153;STRANDS=+-:6;IMPRECISE;CIPOS=-30,275;CIEND=-331,29;CIPOS95=-3,125;CIEND95=-132,3;SU=6;PE=6;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:6:0.93:-5,-6,-25:33:29:3:29:3:0:0:0:29:3:0.094 0/1:5:6.63:-12,-11,-52:69:61:7:61:7:0:0:0:61:7:0.1
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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182 3 38399708 2022_1 N [8:75876952[N 69.39 . SVTYPE=BND;STRANDS=--:7;IMPRECISE;CIPOS=-183,29;CIEND=-278,21;CIPOS95=-61,8;CIEND95=-131,3;MATEID=2022_2;EVENT=2022;SU=7;PE=7;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:9:0.51:-2,-3,-11:14:12:1:12:1:0:0:0:12:1:0.077 0/1:68:68.88:-9,-2,-10:18:13:4:13:4:0:0:0:13:4:0.24
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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183 3 48372309 2020_1 N N]7:32225987] 17.6 . SVTYPE=BND;STRANDS=++:11;IMPRECISE;CIPOS=-30,202;CIEND=-21,243;CIPOS95=-3,76;CIEND95=-3,120;MATEID=2020_2;EVENT=2020;SU=11;PE=11;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:63:0:-2,-8,-29:32:30:1:30:1:0:0:0:30:1:0.032 0/1:17:17.6:-14,-12,-56:75:66:8:66:8:0:0:0:66:8:0.11
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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184 3 54428366 2030_1 N ]12:28226427]N 80.79 . SVTYPE=BND;STRANDS=-+:9;IMPRECISE;CIPOS=-347,29;CIEND=-30,209;CIPOS95=-126,3;CIEND95=-5,78;MATEID=2030_2;EVENT=2030;SU=9;PE=9;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:24:0.02:-2,-4,-16:19:17:1:17:1:0:0:0:17:1:0.056 0/1:80:80.78:-12,-4,-21:34:27:6:27:6:0:0:0:27:6:0.18
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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185 3 75960769 2029_1 N [11:130675918[N 56.61 . SVTYPE=BND;STRANDS=--:12;IMPRECISE;CIPOS=-236,22;CIEND=-202,26;CIPOS95=-114,2;CIEND95=-74,5;MATEID=2029_2;EVENT=2029;SU=12;PE=12;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:30:0:-3,-6,-25:31:28:2:28:2:0:0:0:28:2:0.067 0/1:56:56.6:-15,-9,-44:62:53:8:53:8:0:0:0:53:8:0.13
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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186 3 105828859 2016_1 N ]5:141379626]N 9.54 . SVTYPE=BND;STRANDS=-+:10;IMPRECISE;CIPOS=-339,29;CIEND=-30,223;CIPOS95=-117,3;CIEND95=-4,92;MATEID=2016_2;EVENT=2016;SU=10;PE=10;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:0:2.92:-5,-5,-24:31:27:3:27:3:0:0:0:27:3:0.1 0/1:5:6.63:-12,-11,-52:69:61:7:61:7:0:0:0:61:7:0.1
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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187 3 124936235 416 N <DEL> 4.27 . SVTYPE=DEL;SVLEN=-928;END=124937163;STRANDS=+-:11;IMPRECISE;CIPOS=-30,296;CIEND=-209,29;CIPOS95=-1,92;CIEND95=-82,5;SU=11;PE=11;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:114:0:-3,-14,-53:60:57:2:56:2:25:0:1:31:1:0.034 0/1:2:4.27:-20,-20,-92:121:108:12:107:12:48:0:4:59:8:0.1
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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188 3 129763389 422 N <DEL> 128.11 . SVTYPE=DEL;SVLEN=-43353;END=129806742;STRANDS=+-:22;IMPRECISE;CIPOS=-29,151;CIEND=-153,25;CIPOS95=-6,48;CIEND95=-54,5;SU=22;PE=22;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:63:0:-11,-17,-74:93:85:7:84:7:38:0:1:46:6:0.077 0/1:128:128.11:-32,-19,-98:138:120:18:119:18:46:0:1:73:17:0.13
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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189 3 144517821 426 N <DEL> 32.69 . SVTYPE=DEL;SVLEN=-636;END=144518457;STRANDS=+-:9;IMPRECISE;CIPOS=-25,240;CIEND=-244,26;CIPOS95=-4,96;CIEND95=-111,3;SU=9;PE=9;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:27:0.01:-2,-4,-17:20:18:1:18:1:0:0:0:18:1:0.053 0/1:32:32.68:-11,-8,-36:50:43:6:43:6:0:0:0:43:6:0.12
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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190 3 151748833 452_1 N [3:176444683[N 128.49 . SVTYPE=BND;STRANDS=--:14;IMPRECISE;CIPOS=-195,25;CIEND=-316,29;CIPOS95=-82,4;CIEND95=-107,2;MATEID=452_2;EVENT=452;SU=14;PE=14;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:144:0:-0,-14,-48:50:49:0:48:0:21:0:0:27:0:0 0/1:128:128.49:-22,-10,-52:78:65:12:65:12:0:0:0:65:12:0.16
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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191 3 158034493 2019_1 N N]6:32688592] 74.64 . SVTYPE=BND;STRANDS=++:11;IMPRECISE;CIPOS=-30,336;CIEND=-30,259;CIPOS95=-2,119;CIEND95=-5,83;MATEID=2019_2;EVENT=2019;SU=11;PE=11;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:0:2.95:-4,-4,-16:21:18:2:18:2:0:0:0:18:2:0.1 0/1:71:71.7:-13,-6,-32:47:39:7:39:7:0:0:0:39:7:0.15
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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192 3 176444683 452_2 N [3:151748833[N 128.49 . SVTYPE=BND;STRANDS=--:14;IMPRECISE;CIPOS=-316,29;CIEND=-195,25;CIPOS95=-107,2;CIEND95=-82,4;MATEID=452_1;EVENT=452;SECONDARY;SU=14;PE=14;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:144:0:-0,-14,-48:50:49:0:48:0:21:0:0:27:0:0 0/1:128:128.49:-22,-10,-52:78:65:12:65:12:0:0:0:65:12:0.16
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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193 3 182298978 2028_1 N N[11:94948981[ 125.52 . SVTYPE=BND;STRANDS=+-:15;IMPRECISE;CIPOS=-30,181;CIEND=-225,14;CIPOS95=-6,68;CIEND95=-114,2;MATEID=2028_2;EVENT=2028;SU=15;PE=15;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:0:2.92:-5,-5,-24:31:27:3:27:3:0:0:0:27:3:0.1 0/1:122:122.61:-19,-7,-39:60:49:10:49:10:0:0:0:49:10:0.17
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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195 3 184156702 2039_1 N N]20:231409] 74.64 . SVTYPE=BND;STRANDS=++:7;IMPRECISE;CIPOS=-30,247;CIEND=-30,347;CIPOS95=-3,103;CIEND95=-1,138;MATEID=2039_2;EVENT=2039;SU=7;PE=7;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:144:0:-0,-14,-48:50:49:0:48:0:26:0:0:22:0:0 0/1:74:74.64:-15,-7,-38:56:47:8:47:8:0:0:0:47:8:0.15
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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196 3 190785116 464 N <DEL> 410.48 . SVTYPE=DEL;SVLEN=-4203;END=190789319;STRANDS=+-:24;IMPRECISE;CIPOS=-21,138;CIEND=-156,17;CIPOS95=-4,41;CIEND95=-53,4;SU=24;PE=24;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:30:0:-7,-10,-41:53:47:5:46:4:23:0:1:23:3:0.08 0/1:200:410.47:-45,-4,-35:74:52:21:52:21:0:0:0:52:21:0.29
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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197 3 192376521 2027_1 N N]10:65545580] 77.58 . SVTYPE=BND;STRANDS=++:11;IMPRECISE;CIPOS=-28,201;CIEND=-30,218;CIPOS95=-5,76;CIEND95=-2,97;MATEID=2027_2;EVENT=2027;SU=11;PE=11;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:120:0:-0,-12,-40:42:41:0:40:0:17:0:0:23:0:0 0/1:77:77.58:-17,-9,-45:65:55:9:55:9:0:0:0:55:9:0.14
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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198 4 44842163 1942_2 N ]1:42552553]N 59.54 . SVTYPE=BND;STRANDS=-+:7;IMPRECISE;CIPOS=-238,29;CIEND=-15,285;CIPOS95=-86,5;CIEND95=-1,137;MATEID=1942_1;EVENT=1942;SECONDARY;SU=7;PE=7;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:57:0:-3,-9,-34:40:37:2:37:2:0:0:0:37:2:0.051 0/1:59:59.54:-16,-10,-51:71:61:9:61:9:0:0:0:61:9:0.13
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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199 4 68944782 1977_2 N N]2:204273805] 62.68 . SVTYPE=BND;STRANDS=++:6;IMPRECISE;CIPOS=-30,257;CIEND=-30,269;CIPOS95=-3,96;CIEND95=-4,116;MATEID=1977_1;EVENT=1977;SECONDARY;SU=6;PE=6;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:84:0:-0,-8,-28:30:29:0:28:0:15:0:0:13:0:0 0/1:62:62.68:-13,-7,-34:50:42:7:42:7:0:0:0:42:7:0.14
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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diff changeset
200 4 73831211 526 N <DEL> 50.02 . SVTYPE=DEL;SVLEN=-607;END=73831818;STRANDS=+-:18;IMPRECISE;CIPOS=-24,181;CIEND=-193,23;CIPOS95=-5,72;CIEND95=-92,3;SU=18;PE=18;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:93:0:-6,-15,-61:73:68:4:67:4:34:0:1:33:3:0.056 0/1:50:50.02:-29,-24,-115:155:137:18:136:17:71:0:4:65:13:0.11
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
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ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
202 4 88268261 539 N <DEL> 270.23 . SVTYPE=DEL;SVLEN=-6073;END=88274334;STRANDS=+-:22;IMPRECISE;CIPOS=-30,213;CIEND=-261,29;CIPOS95=-4,46;CIEND95=-61,3;SU=22;PE=22;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:6:0.91:-9,-9,-41:55:48:6:47:5:23:0:0:24:5:0.096 0/1:200:269.32:-37,-10,-62:102:81:20:81:19:34:0:4:47:15:0.19
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
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ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
204 4 102787795 558 N <DEL> 191.42 . SVTYPE=DEL;SVLEN=-563;END=102788358;STRANDS=+-:13;IMPRECISE;CIPOS=-30,156;CIEND=-267,29;CIPOS95=-7,45;CIEND95=-90,3;SU=13;PE=13;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:33:0:-5,-8,-34:44:39:4:38:3:18:0:1:20:2:0.073 0/1:191:191.42:-29,-10,-55:89:72:16:71:15:29:0:4:42:11:0.17
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
205 4 144573271 595 N <DEL> 185.04 . SVTYPE=DEL;SVLEN=-341;END=144573612;STRANDS=+-:15;IMPRECISE;CIPOS=-30,232;CIEND=-306,29;CIPOS95=-6,59;CIEND95=-96,3;SU=15;PE=15;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:0:2.82:-10,-10,-47:63:55:7:54:6:27:0:0:27:6:0.1 0/1:182:182.21:-33,-15,-81:121:102:19:101:18:50:0:3:51:15:0.15
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
206 4 151011309 600 N <DUP> 138.15 . SVTYPE=DUP;SVLEN=339;END=151011648;STRANDS=-+:17;IMPRECISE;CIPOS=-241,29;CIEND=-25,181;CIPOS95=-72,3;CIEND95=-3,75;SU=17;PE=17;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:44:0:-1,-6,-12:95:91:4:90:3:48:0:2:42:1:0.032 0/1:77:138.15:-17,-3,-11:184:161:23:160:22:74:0:6:86:16:0.12
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
209 4 174044216 1979_2 N [2:78091959[N 38.57 . SVTYPE=BND;STRANDS=--:11;IMPRECISE;CIPOS=-186,29;CIEND=-245,12;CIPOS95=-64,6;CIEND95=-112,1;MATEID=1979_1;EVENT=1979;SECONDARY;SU=11;PE=11;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:54:0:-2,-7,-26:29:27:1:27:1:0:0:0:27:1:0.036 0/1:38:38.57:-14,-10,-50:68:59:8:59:8:0:0:0:59:8:0.12
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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210 4 175534267 2057_1 N N[10:123120353[ 44.64 . SVTYPE=BND;STRANDS=+-:9;IMPRECISE;CIPOS=-30,221;CIEND=-334,29;CIPOS95=-6,88;CIEND95=-128,1;MATEID=2057_2;EVENT=2057;SU=9;PE=9;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:111:0:-0,-11,-37:39:38:0:37:0:15:0:0:22:0:0 0/1:44:44.64:-13,-8,-40:56:48:7:48:7:0:0:0:48:7:0.13
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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211 4 183256660 2052_1 N N]8:131547788] 35.56 . SVTYPE=BND;STRANDS=++:11;IMPRECISE;CIPOS=-30,200;CIEND=-30,269;CIPOS95=-5,71;CIEND95=-4,96;MATEID=2052_2;EVENT=2052;SU=11;PE=11;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:36:0:-2,-5,-20:23:21:1:21:1:0:0:0:21:1:0.045 0/1:35:35.56:-14,-11,-50:69:60:8:60:8:0:0:0:60:8:0.12
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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212 4 186382139 2053_1 N N[9:129005120[ 47.65 . SVTYPE=BND;STRANDS=+-:8;IMPRECISE;CIPOS=-30,302;CIEND=-332,29;CIPOS95=-4,112;CIEND95=-130,1;MATEID=2053_2;EVENT=2053;SU=8;PE=8;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:150:0:-0,-15,-50:51:50:0:50:0:27:0:0:23:0:0 0/1:47:47.65:-13,-8,-39:55:47:7:47:7:0:0:0:47:7:0.13
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
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213 5 1178285 638 N <DEL> 156.03 . SVTYPE=DEL;SVLEN=-2440;END=1180725;STRANDS=+-:13;IMPRECISE;CIPOS=-30,190;CIEND=-207,22;CIPOS95=-3,69;CIEND95=-83,3;SU=13;PE=13;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:9:0.49:-7,-8,-34:46:40:5:39:4:19:0:1:20:3:0.093 0/1:155:155.54:-23,-8,-44:70:57:13:56:12:26:0:2:30:10:0.18
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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214 5 5595231 2087_1 N N]15:52589534] 45.28 . SVTYPE=BND;STRANDS=++:8;IMPRECISE;CIPOS=-30,176;CIEND=-30,339;CIPOS95=-8,51;CIEND95=-2,128;MATEID=2087_2;EVENT=2087;SU=8;PE=8;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:9:0.51:-2,-3,-11:14:12:1:12:1:0:0:0:12:1:0.077 0/1:44:44.77:-10,-5,-25:36:30:5:30:5:0:0:0:30:5:0.14
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
215 5 26796704 664 N <DEL> 397.89 . SVTYPE=DEL;SVLEN=-5193;END=26801897;STRANDS=+-:24;IMPRECISE;CIPOS=-19,177;CIEND=-248,29;CIPOS95=-2,85;CIEND95=-58,7;SU=24;PE=24;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:24:0.02:-8,-11,-47:61:54:6:53:5:27:0:3:26:2:0.086 0/1:200:397.88:-57,-17,-105:170:138:31:137:30:68:0:10:69:20:0.18
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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216 5 37709852 2072_1 N N[7:8663298[ 23.36 . SVTYPE=BND;STRANDS=+-:12;IMPRECISE;CIPOS=-23,233;CIEND=-187,29;CIPOS95=-2,114;CIEND95=-65,3;MATEID=2072_2;EVENT=2072;SU=12;PE=12;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:93:0:-1,-11,-38:42:40:1:40:1:0:0:0:40:1:0.024 0/1:23:23.36:-19,-16,-77:103:91:11:91:11:0:0:0:91:11:0.11
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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217 5 53122606 680_1 N [5:53125511[N 44.45 . SVTYPE=BND;STRANDS=--:13;IMPRECISE;CIPOS=-216,23;CIEND=-170,29;CIPOS95=-97,3;CIEND95=-54,3;MATEID=680_2;EVENT=680;SU=13;PE=13;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:33:0:-3,-7,-26:32:29:2:29:2:0:0:0:29:2:0.065 0/1:44:44.45:-18,-13,-63:86:75:10:75:10:0:0:0:75:10:0.12
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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218 5 53122773 679_1 N N]5:53125484] 16.29 . SVTYPE=BND;STRANDS=++:14;IMPRECISE;CIPOS=-30,301;CIEND=-30,250;CIPOS95=-3,93;CIEND95=-5,62;MATEID=679_2;EVENT=679;SU=14;PE=14;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:3:1.68:-7,-7,-32:42:37:4:37:4:0:0:0:37:4:0.098 0/1:14:14.61:-15,-14,-65:86:76:9:76:9:0:0:0:76:9:0.11
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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219 5 53125484 679_2 N N]5:53122773] 16.29 . SVTYPE=BND;STRANDS=++:14;IMPRECISE;CIPOS=-30,250;CIEND=-30,301;CIPOS95=-5,62;CIEND95=-3,93;MATEID=679_1;EVENT=679;SECONDARY;SU=14;PE=14;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:3:1.68:-7,-7,-32:42:37:4:37:4:0:0:0:37:4:0.098 0/1:14:14.61:-15,-14,-65:86:76:9:76:9:0:0:0:76:9:0.11
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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220 5 53125511 680_2 N [5:53122606[N 44.45 . SVTYPE=BND;STRANDS=--:13;IMPRECISE;CIPOS=-170,29;CIEND=-216,23;CIPOS95=-54,3;CIEND95=-97,3;MATEID=680_1;EVENT=680;SECONDARY;SU=13;PE=13;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:33:0:-3,-7,-26:32:29:2:29:2:0:0:0:29:2:0.065 0/1:44:44.45:-18,-13,-63:86:75:10:75:10:0:0:0:75:10:0.12
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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221 5 54865791 2076_1 N ]10:75489275]N 68.56 . SVTYPE=BND;STRANDS=-+:10;IMPRECISE;CIPOS=-193,29;CIEND=-26,197;CIPOS95=-65,6;CIEND95=-6,73;MATEID=2076_2;EVENT=2076;SU=10;PE=10;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:120:0:-0,-12,-40:41:41:0:40:0:14:0:0:26:0:0 0/1:68:68.56:-16,-10,-48:68:58:9:58:9:0:0:0:58:9:0.13
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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222 5 54865801 2075_1 N N[10:75489000[ 192.34 . SVTYPE=BND;STRANDS=+-:20;IMPRECISE;CIPOS=-30,152;CIEND=-204,12;CIPOS95=-6,52;CIEND95=-104,1;MATEID=2075_2;EVENT=2075;SU=20;PE=20;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:6:0.92:-7,-8,-33:43:38:4:38:4:0:0:0:38:4:0.095 0/1:191:191.42:-29,-10,-55:87:71:15:71:15:0:0:0:71:15:0.17
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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223 5 95966521 721 N <DEL> 116.34 . SVTYPE=DEL;SVLEN=-840;END=95967361;STRANDS=+-:12;IMPRECISE;CIPOS=-25,215;CIEND=-175,29;CIPOS95=-2,96;CIEND95=-60,4;SU=12;PE=12;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:90:0:-1,-10,-37:42:40:1:39:1:22:0:1:17:0:0.025 0/1:116:116.34:-25,-14,-71:104:88:15:87:14:45:0:4:42:10:0.14
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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224 5 103062313 728 N <DEL> 230.44 . SVTYPE=DEL;SVLEN=-322;END=103062635;STRANDS=+-:11;IMPRECISE;CIPOS=-30,198;CIEND=-188,29;CIPOS95=-5,76;CIEND95=-67,5;SU=11;PE=11;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:36:0:-3,-7,-27:34:31:2:30:2:15:0:1:15:1:0.062 0/1:200:230.44:-31,-8,-51:86:68:17:67:16:31:0:3:36:13:0.19
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
225 5 108595090 733 N <DEL> 374.28 . SVTYPE=DEL;SVLEN=-6037;END=108601127;STRANDS=+-:21;IMPRECISE;CIPOS=-24,148;CIEND=-141,29;CIPOS95=-3,45;CIEND95=-45,7;SU=21;PE=21;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:33:0:-5,-8,-34:43:39:4:38:3:19:0:1:19:2:0.073 0/1:200:374.27:-46,-9,-60:107:83:24:82:23:47:0:4:35:19:0.22
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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226 5 127336004 753 N <DEL> 380.41 . SVTYPE=DEL;SVLEN=-919;END=127336923;STRANDS=+-:22;IMPRECISE;CIPOS=-30,154;CIEND=-162,25;CIPOS95=-2,57;CIEND95=-61,3;SU=22;PE=22;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:75:0:-3,-11,-40:48:44:3:43:2:25:0:1:18:1:0.044 0/1:200:380.41:-44,-6,-44:85:63:22:62:21:25:0:2:37:19:0.25
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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230 5 147554616 764_2 N N]5:147553039] 422.43 . SVTYPE=BND;STRANDS=++:23;IMPRECISE;CIPOS=-30,190;CIEND=-20,179;CIPOS95=-5,28;CIEND95=-1,88;MATEID=764_1;EVENT=764;SECONDARY;SU=23;PE=23;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:48:0:-2,-6,-24:27:25:1:25:1:0:0:0:25:1:0.038 0/1:200:422.43:-47,-4,-39:80:57:22:57:22:0:0:0:57:22:0.28
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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234 5 169598748 775_2 N N]5:169597700] 254.55 . SVTYPE=BND;STRANDS=++:22;IMPRECISE;CIPOS=-30,138;CIEND=-28,154;CIPOS95=-5,42;CIEND95=-6,52;MATEID=775_1;EVENT=775;SECONDARY;SU=22;PE=22;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:15:0.13:-5,-7,-28:36:32:3:32:3:0:0:0:32:3:0.086 0/1:200:254.42:-34,-8,-51:86:68:17:68:17:0:0:0:68:17:0.2
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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236 5 176652060 756_2 N N]5:157223490] 287.42 . SVTYPE=BND;STRANDS=++:18;IMPRECISE;CIPOS=-30,231;CIEND=-30,248;CIPOS95=-3,63;CIEND95=-5,69;MATEID=756_1;EVENT=756;SECONDARY;SU=18;PE=18;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:200:0:-0,-28,-92:93:93:0:92:0:45:0:0:47:0:0 0/1:200:287.42:-36,-7,-49:85:66:18:66:18:0:0:0:66:18:0.21
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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237 5 178109055 779 N <DEL> 33.43 . SVTYPE=DEL;SVLEN=-4352;END=178113407;STRANDS=+-:10;IMPRECISE;CIPOS=-30,186;CIEND=-255,29;CIPOS95=-7,69;CIEND95=-78,3;SU=10;PE=10;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:6:0.93:-5,-6,-25:35:30:4:29:3:15:0:1:14:2:0.094 0/1:32:32.49:-16,-12,-59:82:71:10:70:9:36:0:2:34:7:0.11
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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241 6 32315438 816 N <DEL> 77.39 . SVTYPE=DEL;SVLEN=-820;END=32316258;STRANDS=+-:17;IMPRECISE;CIPOS=-30,159;CIEND=-237,29;CIPOS95=-7,47;CIEND95=-63,7;SU=17;PE=17;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:60:0:-5,-11,-43:51:47:3:47:3:0:0:0:47:3:0.06 0/1:77:77.39:-21,-14,-68:95:82:12:82:12:0:0:0:82:12:0.13
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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243 6 32688592 2019_2 N N]3:158034493] 74.64 . SVTYPE=BND;STRANDS=++:11;IMPRECISE;CIPOS=-30,259;CIEND=-30,336;CIPOS95=-5,83;CIEND95=-2,119;MATEID=2019_1;EVENT=2019;SECONDARY;SU=11;PE=11;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:0:2.95:-4,-4,-16:21:18:2:18:2:0:0:0:18:2:0.1 0/1:71:71.7:-13,-6,-32:47:39:7:39:7:0:0:0:39:7:0.15
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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244 6 37294925 827 N <DEL> 265.22 . SVTYPE=DEL;SVLEN=-359;END=37295284;STRANDS=+-:15;IMPRECISE;CIPOS=-23,191;CIEND=-239,29;CIPOS95=-2,82;CIEND95=-74,1;SU=15;PE=15;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:3:1.72:-4,-4,-17:22:19:2:19:2:0:0:0:19:2:0.095 0/1:200:263.5:-32,-6,-41:73:56:16:56:16:0:0:0:56:16:0.22
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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246 6 65022877 844 N <DUP> 19.37 . SVTYPE=DUP;SVLEN=494;END=65023371;STRANDS=-+:12;IMPRECISE;CIPOS=-87,29;CIEND=-30,69;CIPOS95=-41,5;CIEND95=-28,5;SU=12;PE=12;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:33:0:-2,-6,-13:113:107:6:106:5:55:0:2:51:3:0.045 0/1:19:19.37:-8,-7,-18:208:191:16:190:15:94:0:4:96:11:0.073
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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247 6 68923562 2046_2 N ]4:81136688]N 6.63 . SVTYPE=BND;STRANDS=-+:8;IMPRECISE;CIPOS=-321,29;CIEND=-30,226;CIPOS95=-121,3;CIEND95=-5,93;MATEID=2046_1;EVENT=2046;SECONDARY;SU=8;PE=8;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:147:0:-0,-15,-49:50:50:0:49:0:20:0:0:29:0:0 0/1:5:6.63:-12,-11,-52:69:61:7:61:7:0:0:0:61:7:0.1
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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248 6 72863847 851 N <DEL> 218.3 . SVTYPE=DEL;SVLEN=-9692;END=72873539;STRANDS=+-:18;IMPRECISE;CIPOS=-30,273;CIEND=-165,28;CIPOS95=-2,76;CIEND95=-55,6;SU=18;PE=18;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:24:0.02:-7,-9,-39:50:45:4:44:4:23:0:2:21:2:0.083 0/1:200:218.28:-34,-12,-70:110:90:19:89:18:43:0:3:46:15:0.17
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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249 6 74156485 2110_1 N N]14:71480241] 35.69 . SVTYPE=BND;STRANDS=++:7;IMPRECISE;CIPOS=-30,265;CIEND=-30,239;CIPOS95=-3,121;CIEND95=-5,91;MATEID=2110_2;EVENT=2110;SU=7;PE=7;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:147:0:-0,-15,-49:50:50:0:49:0:24:0:0:25:0:0 0/1:35:35.69:-11,-7,-35:49:42:6:42:6:0:0:0:42:6:0.12
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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250 6 74932726 856 N <DEL> 14.73 . SVTYPE=DEL;SVLEN=-343;END=74933069;STRANDS=+-:9;IMPRECISE;CIPOS=-30,211;CIEND=-180,29;CIPOS95=-5,76;CIEND95=-50,6;SU=9;PE=9;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:48:0:-3,-8,-31:39:35:3:34:2:15:0:0:19:2:0.056 0/1:14:14.73:-12,-11,-49:68:59:8:58:7:28:0:2:30:5:0.11
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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251 6 89921735 867 N <DEL> 293.56 . SVTYPE=DEL;SVLEN=-436;END=89922171;STRANDS=+-:19;IMPRECISE;CIPOS=-30,271;CIEND=-251,29;CIPOS95=-5,74;CIEND95=-57,5;SU=19;PE=19;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:36:0:-2,-5,-20:23:21:1:21:1:0:0:0:21:1:0.045 0/1:200:293.56:-34,-4,-32:63:46:16:46:16:0:0:0:46:16:0.26
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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252 6 107307808 2100_1 N N[8:105231718[ 98.37 . SVTYPE=BND;STRANDS=+-:17;IMPRECISE;CIPOS=-30,238;CIEND=-281,29;CIPOS95=-6,51;CIEND95=-89,3;MATEID=2100_2;EVENT=2100;SU=17;PE=17;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:84:0:-3,-11,-43:49:46:2:46:2:0:0:0:46:2:0.042 0/1:98:98.37:-23,-14,-69:98:84:13:84:13:0:0:0:84:13:0.13
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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253 6 136589486 906 N <DEL> 270.05 . SVTYPE=DEL;SVLEN=-1088;END=136590574;STRANDS=+-:26;IMPRECISE;CIPOS=-20,157;CIEND=-290,29;CIPOS95=-2,67;CIEND95=-74,3;SU=26;PE=26;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:6:0.92:-7,-8,-33:43:38:4:38:4:0:0:0:38:4:0.095 0/1:200:269.13:-41,-14,-84:131:108:22:108:22:0:0:0:108:22:0.17
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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254 6 159204434 1952_2 N [1:64897140[N 35.75 . SVTYPE=BND;STRANDS=--:6;IMPRECISE;CIPOS=-250,29;CIEND=-289,21;CIPOS95=-106,5;CIEND95=-137,3;MATEID=1952_1;EVENT=1952;SECONDARY;SU=6;PE=6;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:75:0:-0,-8,-25:27:26:0:25:0:9:0:0:16:0:0 0/1:35:35.75:-9,-6,-28:39:33:5:33:5:0:0:0:33:5:0.13
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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255 6 161336425 2096_1 N N[7:85956546[ 77.71 . SVTYPE=BND;STRANDS=+-:8;IMPRECISE;CIPOS=-30,264;CIEND=-252,29;CIPOS95=-4,113;CIEND95=-114,3;MATEID=2096_2;EVENT=2096;SU=8;PE=8;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:93:0:-0,-9,-31:32:32:0:31:0:16:0:0:15:0:0 0/1:77:77.71:-13,-6,-30:45:37:7:37:7:0:0:0:37:7:0.16
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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256 7 8663298 2072_2 N ]5:37709852]N 23.36 . SVTYPE=BND;STRANDS=-+:12;IMPRECISE;CIPOS=-187,29;CIEND=-23,233;CIPOS95=-65,3;CIEND95=-2,114;MATEID=2072_1;EVENT=2072;SECONDARY;SU=12;PE=12;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:93:0:-1,-11,-38:42:40:1:40:1:0:0:0:40:1:0.024 0/1:23:23.36:-19,-16,-77:103:91:11:91:11:0:0:0:91:11:0.11
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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257 7 32225987 2020_2 N N]3:48372309] 17.6 . SVTYPE=BND;STRANDS=++:11;IMPRECISE;CIPOS=-21,243;CIEND=-30,202;CIPOS95=-3,120;CIEND95=-3,76;MATEID=2020_1;EVENT=2020;SECONDARY;SU=11;PE=11;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:63:0:-2,-8,-29:32:30:1:30:1:0:0:0:30:1:0.032 0/1:17:17.6:-14,-12,-56:75:66:8:66:8:0:0:0:66:8:0.11
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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258 7 52399206 1982_2 N N]2:12019022] 14.67 . SVTYPE=BND;STRANDS=++:9;IMPRECISE;CIPOS=-19,261;CIEND=-30,221;CIPOS95=-2,131;CIEND95=-2,91;MATEID=1982_1;EVENT=1982;SECONDARY;SU=9;PE=9;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:200:0:-0,-24,-80:81:81:0:80:0:41:0:0:39:0:0 0/1:14:14.67:-14,-12,-57:76:67:8:67:8:0:0:0:67:8:0.11
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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diff changeset
259 7 65857652 965 N <DEL> 44.9 . SVTYPE=DEL;SVLEN=-2454;END=65860106;STRANDS=+-:8;IMPRECISE;CIPOS=-30,209;CIEND=-236,20;CIPOS95=-5,74;CIEND95=-83,5;SU=8;PE=8;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:15:0.13:-2,-3,-13:16:14:1:14:1:0:0:0:14:1:0.067 0/1:44:44.77:-10,-5,-25:36:30:5:30:5:0:0:0:30:5:0.14
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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260 7 68758443 2095_2 N [6:26625483[N 71.63 . SVTYPE=BND;STRANDS=--:9;IMPRECISE;CIPOS=-228,29;CIEND=-211,27;CIPOS95=-94,5;CIEND95=-91,5;MATEID=2095_1;EVENT=2095;SECONDARY;SU=9;PE=9;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:156:0:-0,-16,-52:54:53:0:52:0:22:0:0:30:0:0 0/1:71:71.63:-15,-8,-39:57:48:8:48:8:0:0:0:48:8:0.14
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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261 7 70420972 968_1 N N]7:70438890] 215.61 . SVTYPE=BND;STRANDS=++:16;IMPRECISE;CIPOS=-30,218;CIEND=-30,162;CIPOS95=-7,56;CIEND95=-5,55;MATEID=968_2;EVENT=968;SU=16;PE=16;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:27:0.01:-2,-4,-17:20:18:1:18:1:0:0:0:18:1:0.053 0/1:200:215.6:-27,-5,-33:59:45:13:45:13:0:0:0:45:13:0.22
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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262 7 70438890 968_2 N N]7:70420972] 215.61 . SVTYPE=BND;STRANDS=++:16;IMPRECISE;CIPOS=-30,162;CIEND=-30,218;CIPOS95=-5,55;CIEND95=-7,56;MATEID=968_1;EVENT=968;SECONDARY;SU=16;PE=16;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:27:0.01:-2,-4,-17:20:18:1:18:1:0:0:0:18:1:0.053 0/1:200:215.6:-27,-5,-33:59:45:13:45:13:0:0:0:45:13:0.22
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
263 7 76134084 972 N <DEL> 56.47 . SVTYPE=DEL;SVLEN=-5998;END=76140082;STRANDS=+-:12;IMPRECISE;CIPOS=-30,225;CIEND=-235,20;CIPOS95=-3,102;CIEND95=-110,2;SU=12;PE=12;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:93:0:-1,-11,-38:42:40:1:40:1:0:0:0:40:1:0.024 0/1:56:56.47:-18,-12,-59:82:71:10:71:10:0:0:0:71:10:0.12
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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264 7 85956546 2096_2 N ]6:161336425]N 77.71 . SVTYPE=BND;STRANDS=-+:8;IMPRECISE;CIPOS=-252,29;CIEND=-30,264;CIPOS95=-114,3;CIEND95=-4,113;MATEID=2096_1;EVENT=2096;SECONDARY;SU=8;PE=8;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:93:0:-0,-9,-31:32:32:0:31:0:16:0:0:15:0:0 0/1:77:77.71:-13,-6,-30:45:37:7:37:7:0:0:0:37:7:0.16
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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265 7 86615393 982 N <DEL> 17.67 . SVTYPE=DEL;SVLEN=-366;END=86615759;STRANDS=+-:5;IMPRECISE;CIPOS=-30,268;CIEND=-334,29;CIPOS95=-4,113;CIEND95=-141,3;SU=5;PE=5;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:33:0:-8,-12,-49:64:57:6:56:5:27:0:0:29:5:0.082 0/1:17:17.66:-12,-10,-49:65:57:7:57:7:0:0:0:57:7:0.11
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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266 7 93357413 1954_2 N ]1:105428633]N 104.7 . SVTYPE=BND;STRANDS=-+:9;IMPRECISE;CIPOS=-225,29;CIEND=-21,258;CIPOS95=-93,4;CIEND95=-2,129;MATEID=1954_1;EVENT=1954;SECONDARY;SU=9;PE=9;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:102:0:-0,-10,-34:36:35:0:34:0:16:0:0:18:0:0 0/1:104:104.7:-16,-5,-29:46:37:8:37:8:0:0:0:37:8:0.18
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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267 7 93541820 990 N <DEL> 197.47 . SVTYPE=DEL;SVLEN=-726;END=93542546;STRANDS=+-:18;IMPRECISE;CIPOS=-23,176;CIEND=-171,28;CIPOS95=-3,64;CIEND95=-61,5;SU=18;PE=18;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:0:2.92:-5,-5,-24:31:27:3:27:3:0:0:0:27:3:0.1 0/1:194:194.56:-26,-6,-39:66:52:13:52:13:0:0:0:52:13:0.2
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
268 7 97993595 995 N <DEL> 185.51 . SVTYPE=DEL;SVLEN=-392;END=97993987;STRANDS=+-:15;IMPRECISE;CIPOS=-30,293;CIEND=-257,29;CIPOS95=-4,93;CIEND95=-65,4;SU=15;PE=15;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:0:2.92:-5,-5,-24:31:27:3:27:3:0:0:0:27:3:0.1 0/1:182:182.6:-24,-6,-36:60:47:12:47:12:0:0:0:47:12:0.2
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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269 7 98015910 2142_1 N N[X:136092975[ 41.64 . SVTYPE=BND;STRANDS=+-:8;IMPRECISE;CIPOS=-30,341;CIEND=-279,29;CIPOS95=-1,133;CIEND95=-91,4;MATEID=2142_2;EVENT=2142;SU=8;PE=8;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:111:0:-0,-11,-37:38:38:0:37:0:17:0:0:20:0:0 0/1:41:41.64:-13,-8,-41:57:49:7:49:7:0:0:0:49:7:0.12
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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270 7 100056291 1014 N <DUP> 14.32 . SVTYPE=DUP;SVLEN=29100863;END=129157154;STRANDS=-+:6;IMPRECISE;CIPOS=-353,29;CIEND=-30,253;CIPOS95=-143,1;CIEND95=-3,108;SU=6;PE=6;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:63:0:-0,-7,-12:69:69:0:69:0:36:0:0:33:0:0 0/1:14:14.32:-4,-2,-5:61:55:5:55:5:0:0:0:55:5:0.083
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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271 7 111053752 2134_1 N N[12:108203254[ 243.95 . SVTYPE=BND;STRANDS=+-:23;IMPRECISE;CIPOS=-29,164;CIEND=-134,20;CIPOS95=-4,72;CIEND95=-36,3;MATEID=2134_2;EVENT=2134;SU=23;PE=23;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:3:1.68:-7,-7,-32:42:37:4:37:4:0:0:0:37:4:0.098 0/1:200:242.27:-36,-12,-70:110:90:19:90:19:0:0:0:90:19:0.17
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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272 7 127930431 2140_1 N ]16:76865795]N 138.22 . SVTYPE=BND;STRANDS=-+:20;IMPRECISE;CIPOS=-179,18;CIEND=-30,160;CIPOS95=-67,4;CIEND95=-5,57;MATEID=2140_2;EVENT=2140;SU=20;PE=20;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:6:0.91:-9,-9,-41:53:47:5:47:5:0:0:0:47:5:0.096 0/1:137:137.32:-27,-14,-72:105:89:15:89:15:0:0:0:89:15:0.14
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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diff changeset
273 7 151230203 1031 N <DEL> 392.44 . SVTYPE=DEL;SVLEN=-1664;END=151231867;STRANDS=+-:22;IMPRECISE;CIPOS=-30,220;CIEND=-221,29;CIPOS95=-4,84;CIEND95=-52,4;SU=22;PE=22;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:129:0:-1,-14,-50:56:53:2:52:1:25:0:0:27:1:0.019 0/1:200:392.44:-44,-5,-40:80:58:21:58:21:0:0:0:58:21:0.27
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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274 7 156387047 1037_1 N N]7:156387226] 111.08 . SVTYPE=BND;STRANDS=++:14;IMPRECISE;CIPOS=-30,38;CIEND=-18,220;CIPOS95=-3,38;CIEND95=-1,109;MATEID=1037_2;EVENT=1037;SU=14;PE=14;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:9:0.5:-4,-5,-19:24:21:2:21:2:0:0:0:21:2:0.087 0/1:110:110.58:-19,-8,-42:64:53:10:53:10:0:0:0:53:10:0.16
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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275 7 156387226 1037_2 N N]7:156387047] 111.08 . SVTYPE=BND;STRANDS=++:14;IMPRECISE;CIPOS=-18,220;CIEND=-30,38;CIPOS95=-1,109;CIEND95=-3,38;MATEID=1037_1;EVENT=1037;SECONDARY;SU=14;PE=14;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:9:0.5:-4,-5,-19:24:21:2:21:2:0:0:0:21:2:0.087 0/1:110:110.58:-19,-8,-42:64:53:10:53:10:0:0:0:53:10:0.16
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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276 8 11245570 1051 N <DEL> 81.6 . SVTYPE=DEL;SVLEN=-1642;END=11247212;STRANDS=+-:12;IMPRECISE;CIPOS=-30,211;CIEND=-194,28;CIPOS95=-5,79;CIEND95=-70,2;SU=12;PE=12;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:6:0.95:-4,-4,-18:23:20:2:20:2:0:0:0:20:2:0.091 0/1:80:80.65:-15,-7,-36:54:45:8:45:8:0:0:0:45:8:0.15
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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277 8 14588058 1055 N <DEL> 89.29 . SVTYPE=DEL;SVLEN=-764;END=14588822;STRANDS=+-:17;IMPRECISE;CIPOS=-30,171;CIEND=-151,29;CIPOS95=-6,62;CIEND95=-43,6;SU=17;PE=17;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:0:2.95:-4,-4,-16:21:18:2:18:2:0:0:0:18:2:0.1 0/1:86:86.34:-23,-14,-73:103:89:14:88:13:41:0:0:47:13:0.13
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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diff changeset
278 8 16821879 1061 N <DEL> 320.24 . SVTYPE=DEL;SVLEN=-380;END=16822259;STRANDS=+-:18;IMPRECISE;CIPOS=-27,149;CIEND=-175,29;CIPOS95=-8,46;CIEND95=-46,7;SU=18;PE=18;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:27:0.01:-8,-11,-48:62:55:6:54:5:26:0:1:28:4:0.085 0/1:200:320.23:-43,-11,-69:115:92:23:91:22:44:0:7:47:15:0.19
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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279 8 30145409 2157_1 N ]17:7167951]N 146.33 . SVTYPE=BND;STRANDS=-+:12;IMPRECISE;CIPOS=-221,26;CIEND=-30,192;CIPOS95=-99,4;CIEND95=-6,76;MATEID=2157_2;EVENT=2157;SU=12;PE=12;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:84:0:-1,-10,-35:39:37:1:37:1:0:0:0:37:1:0.026 0/1:146:146.33:-28,-13,-69:102:86:15:86:15:0:0:0:86:15:0.15
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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280 8 59616000 2156_1 N N]16:3354097] 4.43 . SVTYPE=BND;STRANDS=++:10;IMPRECISE;CIPOS=-30,246;CIEND=-16,247;CIPOS95=-5,81;CIEND95=-1,117;MATEID=2156_2;EVENT=2156;SU=10;PE=10;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:159:0:-0,-16,-53:55:54:0:53:0:27:0:0:26:0:0 0/1:2:4.43:-14,-13,-61:80:71:8:71:8:0:0:0:71:8:0.1
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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281 8 75876952 2022_2 N [3:38399708[N 69.39 . SVTYPE=BND;STRANDS=--:7;IMPRECISE;CIPOS=-278,21;CIEND=-183,29;CIPOS95=-131,3;CIEND95=-61,8;MATEID=2022_1;EVENT=2022;SECONDARY;SU=7;PE=7;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:9:0.51:-2,-3,-11:14:12:1:12:1:0:0:0:12:1:0.077 0/1:68:68.88:-9,-2,-10:18:13:4:13:4:0:0:0:13:4:0.24
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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284 8 105231718 2100_2 N ]6:107307808]N 98.37 . SVTYPE=BND;STRANDS=-+:17;IMPRECISE;CIPOS=-281,29;CIEND=-30,238;CIPOS95=-89,3;CIEND95=-6,51;MATEID=2100_1;EVENT=2100;SECONDARY;SU=17;PE=17;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:84:0:-3,-11,-43:49:46:2:46:2:0:0:0:46:2:0.042 0/1:98:98.37:-23,-14,-69:98:84:13:84:13:0:0:0:84:13:0.13
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
285 8 118980771 1117 N <DEL> 54.91 . SVTYPE=DEL;SVLEN=-380;END=118981151;STRANDS=+-:9;IMPRECISE;CIPOS=-24,253;CIEND=-256,29;CIPOS95=-3,120;CIEND95=-73,5;SU=9;PE=9;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:3:1.7:-5,-6,-24:34:29:4:28:3:14:0:0:14:3:0.097 0/1:53:53.21:-24,-19,-91:124:108:15:108:14:53:0:5:55:9:0.11
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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286 8 131547788 2052_2 N N]4:183256660] 35.56 . SVTYPE=BND;STRANDS=++:11;IMPRECISE;CIPOS=-30,269;CIEND=-30,200;CIPOS95=-4,96;CIEND95=-5,71;MATEID=2052_1;EVENT=2052;SECONDARY;SU=11;PE=11;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:36:0:-2,-5,-20:23:21:1:21:1:0:0:0:21:1:0.045 0/1:35:35.56:-14,-11,-50:69:60:8:60:8:0:0:0:60:8:0.12
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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288 8 140475502 2147_1 N N[11:56303340[ 65.81 . SVTYPE=BND;STRANDS=+-:6;IMPRECISE;CIPOS=-30,330;CIEND=-314,29;CIPOS95=-3,130;CIEND95=-123,3;MATEID=2147_2;EVENT=2147;SU=6;PE=6;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:81:0:-0,-8,-27:29:28:0:27:0:12:0:0:15:0:0 0/1:65:65.81:-10,-3,-18:29:23:5:23:5:0:0:0:23:5:0.18
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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289 9 1940734 2024_2 N ]3:182299013]N 92.74 . SVTYPE=BND;STRANDS=-+:8;IMPRECISE;CIPOS=-347,29;CIEND=-30,218;CIPOS95=-133,1;CIEND95=-6,66;MATEID=2024_1;EVENT=2024;SECONDARY;SU=8;PE=8;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:69:0:-0,-7,-23:25:24:0:23:0:11:0:0:12:0:0 0/1:92:92.74:-14,-5,-25:40:32:7:32:7:0:0:0:32:7:0.18
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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290 9 104182136 1185 N <DUP> 112.92 . SVTYPE=DUP;SVLEN=293;END=104182429;STRANDS=-+:6;IMPRECISE;CIPOS=-272,29;CIEND=-30,258;CIPOS95=-118,4;CIEND95=-4,110;SU=6;PE=6;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:22:0.03:-1,-3,-7:55:52:2:52:2:0:0:0:52:2:0.037 0/1:54:112.9:-13,-2,-8:135:117:17:117:17:0:0:0:117:17:0.13
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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diff changeset
291 9 104714849 1187 N <DEL> 266.25 . SVTYPE=DEL;SVLEN=-9627;END=104724476;STRANDS=+-:19;IMPRECISE;CIPOS=-28,161;CIEND=-151,29;CIPOS95=-5,57;CIEND95=-44,7;SU=19;PE=19;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:54:0:-3,-9,-33:40:37:2:36:2:19:0:1:17:1:0.053 0/1:200:266.25:-38,-12,-70:114:92:21:91:20:44:0:3:47:17:0.18
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
292 9 110033442 1191 N <DEL> 35.75 . SVTYPE=DEL;SVLEN=-2090;END=110035532;STRANDS=+-:6;IMPRECISE;CIPOS=-30,269;CIEND=-283,28;CIPOS95=-3,124;CIEND95=-132,3;SU=6;PE=6;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:108:0:-0,-11,-36:37:37:0:36:0:16:0:0:20:0:0 0/1:35:35.75:-9,-6,-28:39:33:5:33:5:0:0:0:33:5:0.13
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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293 9 127885505 2170_1 N N]18:71711520] 26.91 . SVTYPE=BND;STRANDS=++:15;IMPRECISE;CIPOS=-30,297;CIEND=-30,276;CIPOS95=-4,85;CIEND95=-5,72;MATEID=2170_2;EVENT=2170;SU=15;PE=15;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:9:0.49:-7,-8,-34:44:39:4:39:4:0:0:0:39:4:0.093 0/1:26:26.42:-17,-15,-69:92:81:10:81:10:0:0:0:81:10:0.11
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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294 9 129005120 2053_2 N ]4:186382139]N 47.65 . SVTYPE=BND;STRANDS=-+:8;IMPRECISE;CIPOS=-332,29;CIEND=-30,302;CIPOS95=-130,1;CIEND95=-4,112;MATEID=2053_1;EVENT=2053;SECONDARY;SU=8;PE=8;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:150:0:-0,-15,-50:51:50:0:50:0:27:0:0:23:0:0 0/1:47:47.65:-13,-8,-39:55:47:7:47:7:0:0:0:47:7:0.13
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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295 9 139427511 1205 N <DEL> 107.38 . SVTYPE=DEL;SVLEN=-286;END=139427797;STRANDS=+-:6;IMPRECISE;CIPOS=-30,233;CIEND=-206,29;CIPOS95=-5,87;CIEND95=-73,7;SU=6;PE=6;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:45:0:-5,-9,-38:48:43:4:42:3:20:0:2:22:1:0.067 0/1:107:107.38:-24,-13,-66:96:82:13:81:13:42:0:2:39:11:0.14
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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296 9 141058509 2162_1 N [10:107209[N 65.36 . SVTYPE=BND;STRANDS=--:14;IMPRECISE;CIPOS=-283,29;CIEND=-307,29;CIPOS95=-88,2;CIEND95=-97,4;MATEID=2162_2;EVENT=2162;SU=14;PE=14;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:63:0:-2,-8,-29:32:30:1:30:1:0:0:0:30:1:0.032 0/1:65:65.36:-21,-15,-72:99:86:12:86:12:0:0:0:86:12:0.12
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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297 10 107209 2162_2 N [9:141058509[N 65.36 . SVTYPE=BND;STRANDS=--:14;IMPRECISE;CIPOS=-307,29;CIEND=-283,29;CIPOS95=-97,4;CIEND95=-88,2;MATEID=2162_1;EVENT=2162;SECONDARY;SU=14;PE=14;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:63:0:-2,-8,-29:32:30:1:30:1:0:0:0:30:1:0.032 0/1:65:65.36:-21,-15,-72:99:86:12:86:12:0:0:0:86:12:0.12
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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298 10 35593223 1241 N <DEL> 284.45 . SVTYPE=DEL;SVLEN=-325;END=35593548;STRANDS=+-:16;IMPRECISE;CIPOS=-30,160;CIEND=-163,29;CIPOS95=-5,57;CIEND95=-54,6;SU=16;PE=16;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:21:0.03:-5,-7,-30:39:35:3:34:3:18:0:2:16:1:0.081 0/1:200:284.42:-36,-8,-50:88:68:19:67:18:35:0:4:32:14:0.21
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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299 10 45158118 1246 N <DEL> 30.18 . SVTYPE=DEL;SVLEN=-415;END=45158533;STRANDS=+-:9;IMPRECISE;CIPOS=-26,235;CIEND=-218,29;CIPOS95=-2,102;CIEND95=-78,6;SU=9;PE=9;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:9:0.5:-4,-5,-19:24:21:2:21:2:0:0:0:21:2:0.087 0/1:29:29.68:-11,-8,-37:51:44:6:44:6:0:0:0:44:6:0.12
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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300 10 51019958 2171_1 N N]12:46175132] 98.5 . SVTYPE=BND;STRANDS=++:13;IMPRECISE;CIPOS=-17,236;CIEND=-30,221;CIPOS95=-2,120;CIEND95=-6,48;MATEID=2171_2;EVENT=2171;SU=13;PE=13;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:0:2.95:-4,-4,-16:21:18:2:18:2:0:0:0:18:2:0.1 0/1:95:95.55:-19,-9,-47:69:58:10:58:10:0:0:0:58:10:0.15
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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301 10 55893654 1253 N <DEL> 128.65 . SVTYPE=DEL;SVLEN=-471;END=55894125;STRANDS=+-:13;IMPRECISE;CIPOS=-30,191;CIEND=-257,29;CIPOS95=-6,74;CIEND95=-81,3;SU=13;PE=13;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:21:0.03:-2,-4,-15:18:16:1:16:1:0:0:0:16:1:0.059 0/1:128:128.62:-19,-7,-37:58:47:10:47:10:0:0:0:47:10:0.18
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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302 10 59256942 1255_1 N N]10:59257951] 32.64 . SVTYPE=BND;STRANDS=++:11;IMPRECISE;CIPOS=-30,139;CIEND=-20,234;CIPOS95=-10,31;CIEND95=-5,105;MATEID=1255_2;EVENT=1255;SU=11;PE=11;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:24:0.02:-3,-6,-24:29:26:2:26:2:0:0:0:26:2:0.071 0/1:32:32.62:-12,-9,-44:60:52:7:52:7:0:0:0:52:7:0.12
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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303 10 59257660 1256_1 N [10:59257985[N 83.44 . SVTYPE=BND;STRANDS=--:14;IMPRECISE;CIPOS=-292,29;CIEND=-156,29;CIPOS95=-89,2;CIEND95=-53,4;MATEID=1256_2;EVENT=1256;SU=14;PE=14;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:0:2.92:-5,-5,-24:31:27:3:27:3:0:0:0:27:3:0.1 0/1:80:80.52:-18,-10,-52:74:63:10:63:10:0:0:0:63:10:0.14
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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304 10 59257951 1255_2 N N]10:59256942] 32.64 . SVTYPE=BND;STRANDS=++:11;IMPRECISE;CIPOS=-20,234;CIEND=-30,139;CIPOS95=-5,105;CIEND95=-10,31;MATEID=1255_1;EVENT=1255;SECONDARY;SU=11;PE=11;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:24:0.02:-3,-6,-24:29:26:2:26:2:0:0:0:26:2:0.071 0/1:32:32.62:-12,-9,-44:60:52:7:52:7:0:0:0:52:7:0.12
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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305 10 59257985 1256_2 N [10:59257660[N 83.44 . SVTYPE=BND;STRANDS=--:14;IMPRECISE;CIPOS=-156,29;CIEND=-292,29;CIPOS95=-53,4;CIEND95=-89,2;MATEID=1256_1;EVENT=1256;SECONDARY;SU=14;PE=14;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:0:2.92:-5,-5,-24:31:27:3:27:3:0:0:0:27:3:0.1 0/1:80:80.52:-18,-10,-52:74:63:10:63:10:0:0:0:63:10:0.14
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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306 10 65545580 2027_2 N N]3:192376521] 77.58 . SVTYPE=BND;STRANDS=++:11;IMPRECISE;CIPOS=-30,218;CIEND=-28,201;CIPOS95=-2,97;CIEND95=-5,76;MATEID=2027_1;EVENT=2027;SECONDARY;SU=11;PE=11;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:120:0:-0,-12,-40:42:41:0:40:0:17:0:0:23:0:0 0/1:77:77.58:-17,-9,-45:65:55:9:55:9:0:0:0:55:9:0.14
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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307 10 68673027 2174_1 N N]16:59976476] 26.5 . SVTYPE=BND;STRANDS=++:15;IMPRECISE;CIPOS=-30,194;CIEND=-30,168;CIPOS95=-7,54;CIEND95=-6,53;MATEID=2174_2;EVENT=2174;SU=15;PE=15;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:24:0.02:-7,-9,-39:49:44:4:44:4:0:0:0:44:4:0.083 0/1:26:26.49:-16,-13,-61:82:72:9:72:9:0:0:0:72:9:0.11
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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308 10 75489000 2075_2 N ]5:54865801]N 192.34 . SVTYPE=BND;STRANDS=-+:20;IMPRECISE;CIPOS=-204,12;CIEND=-30,152;CIPOS95=-104,1;CIEND95=-6,52;MATEID=2075_1;EVENT=2075;SECONDARY;SU=20;PE=20;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:6:0.92:-7,-8,-33:43:38:4:38:4:0:0:0:38:4:0.095 0/1:191:191.42:-29,-10,-55:87:71:15:71:15:0:0:0:71:15:0.17
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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312 10 132635667 1304_1 N N]10:132636051] 170.7 . SVTYPE=BND;STRANDS=++:13;IMPRECISE;CIPOS=-30,150;CIEND=-30,227;CIPOS95=-6,74;CIEND95=-3,66;MATEID=1304_2;EVENT=1304;SU=13;PE=13;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:30:0:-2,-5,-18:21:19:1:19:1:0:0:0:19:1:0.05 0/1:170:170.7:-21,-4,-24:44:33:10:33:10:0:0:0:33:10:0.23
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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313 10 132636051 1304_2 N N]10:132635667] 170.7 . SVTYPE=BND;STRANDS=++:13;IMPRECISE;CIPOS=-30,227;CIEND=-30,150;CIPOS95=-3,66;CIEND95=-6,74;MATEID=1304_1;EVENT=1304;SECONDARY;SU=13;PE=13;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:30:0:-2,-5,-18:21:19:1:19:1:0:0:0:19:1:0.05 0/1:170:170.7:-21,-4,-24:44:33:10:33:10:0:0:0:33:10:0.23
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
314 10 132858454 1305 N <DEL> 192.22 . SVTYPE=DEL;SVLEN=-365;END=132858819;STRANDS=+-:18;IMPRECISE;CIPOS=-30,237;CIEND=-270,29;CIPOS95=-6,62;CIEND95=-61,4;SU=18;PE=18;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:6:0.92:-7,-8,-33:44:39:4:38:4:17:0:1:21:3:0.095 0/1:191:191.29:-32,-13,-70:109:90:18:89:17:42:0:3:47:14:0.16
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
315 10 132988685 1306 N <DEL> 125.26 . SVTYPE=DEL;SVLEN=-2521;END=132991206;STRANDS=+-:11;IMPRECISE;CIPOS=-29,190;CIEND=-225,29;CIPOS95=-7,77;CIEND95=-95,4;SU=11;PE=11;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:21:0.03:-7,-9,-38:49:44:5:43:4:18:0:2:25:2:0.085 0/1:125:125.23:-29,-16,-83:121:103:17:102:16:54:0:9:48:7:0.14
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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318 11 56303340 2147_2 N ]8:140475502]N 65.81 . SVTYPE=BND;STRANDS=-+:6;IMPRECISE;CIPOS=-314,29;CIEND=-30,330;CIPOS95=-123,3;CIEND95=-3,130;MATEID=2147_1;EVENT=2147;SECONDARY;SU=6;PE=6;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:81:0:-0,-8,-27:29:28:0:27:0:12:0:0:15:0:0 0/1:65:65.81:-10,-3,-18:29:23:5:23:5:0:0:0:23:5:0.18
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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diff changeset
319 11 93695221 1372 N <DEL> 263.26 . SVTYPE=DEL;SVLEN=-6870;END=93702091;STRANDS=+-:20;IMPRECISE;CIPOS=-30,159;CIEND=-292,29;CIPOS95=-7,52;CIEND95=-82,4;SU=20;PE=20;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:24:0.02:-8,-11,-47:61:54:6:53:5:27:0:1:26:4:0.086 0/1:200:263.25:-38,-12,-71:114:93:21:92:20:44:0:6:48:14:0.18
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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320 11 94948981 2028_2 N ]3:182298978]N 125.52 . SVTYPE=BND;STRANDS=-+:15;IMPRECISE;CIPOS=-225,14;CIEND=-30,181;CIPOS95=-114,2;CIEND95=-6,68;MATEID=2028_1;EVENT=2028;SECONDARY;SU=15;PE=15;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:0:2.92:-5,-5,-24:31:27:3:27:3:0:0:0:27:3:0.1 0/1:122:122.61:-19,-7,-39:60:49:10:49:10:0:0:0:49:10:0.17
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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321 11 97172221 1374 N <DEL> 10.54 . SVTYPE=DEL;SVLEN=-749;END=97172970;STRANDS=+-:11;IMPRECISE;CIPOS=-30,241;CIEND=-243,29;CIPOS95=-3,72;CIEND95=-78,5;SU=11;PE=11;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:3:1.68:-7,-7,-32:43:38:4:37:4:18:0:2:19:2:0.098 0/1:8:8.86:-20,-19,-90:119:106:12:105:12:54:0:5:51:7:0.1
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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322 11 99185461 1376 N <DEL> 14.36 . SVTYPE=DEL;SVLEN=-1235;END=99186696;STRANDS=+-:6;IMPRECISE;CIPOS=-30,280;CIEND=-292,29;CIPOS95=-5,92;CIEND95=-125,2;SU=6;PE=6;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:54:0:-3,-9,-33:40:37:2:36:2:17:0:2:19:0:0.053 0/1:14:14.36:-22,-20,-95:128:113:14:112:13:55:0:9:57:4:0.1
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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324 11 106143794 1385_2 N [11:106143090[N 71.63 . SVTYPE=BND;STRANDS=--:7;IMPRECISE;CIPOS=-231,29;CIEND=-283,13;CIPOS95=-97,5;CIEND95=-141,1;MATEID=1385_1;EVENT=1385;SECONDARY;SU=7;PE=7;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:120:0:-0,-12,-40:41:41:0:40:0:16:0:0:24:0:0 0/1:71:71.63:-15,-8,-39:57:48:8:48:8:0:0:0:48:8:0.14
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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326 12 12026417 1404 N <DEL> 266.12 . SVTYPE=DEL;SVLEN=-729;END=12027146;STRANDS=+-:22;IMPRECISE;CIPOS=-29,150;CIEND=-161,21;CIPOS95=-6,52;CIEND95=-63,3;SU=22;PE=22;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:96:0:-3,-13,-47:55:51:3:50:2:25:0:1:25:1:0.038 0/1:200:266.12:-41,-15,-85:133:110:23:109:22:53:0:3:56:19:0.17
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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329 12 30478280 1421 N <DEL> 201.29 . SVTYPE=DEL;SVLEN=-2708;END=30480988;STRANDS=+-:13;IMPRECISE;CIPOS=-30,177;CIEND=-190,24;CIPOS95=-6,64;CIEND95=-73,3;SU=13;PE=13;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:6:0.91:-9,-9,-41:54:48:5:47:5:26:0:2:21:3:0.096 0/1:200:200.38:-30,-10,-60:96:78:17:77:16:36:0:6:41:10:0.17
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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331 12 58359059 2151_2 N ]8:140475500]N 179.85 . SVTYPE=BND;STRANDS=-+:10;IMPRECISE;CIPOS=-224,29;CIEND=-21,252;CIPOS95=-91,4;CIEND95=-2,123;MATEID=2151_1;EVENT=2151;SECONDARY;SU=10;PE=10;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:33:0:-0,-3,-11:12:11:0:11:0:0:0:0:11:0:0 0/1:63:179.85:-19,-1,-7:21:12:8:12:8:0:0:0:12:8:0.4
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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332 12 104359630 1470_1 N [12:125801144[N 134.51 . SVTYPE=BND;STRANDS=--:16;IMPRECISE;CIPOS=-284,29;CIEND=-202,29;CIPOS95=-85,4;CIEND95=-51,3;MATEID=1470_2;EVENT=1470;SU=16;PE=16;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:27:0.01:-3,-6,-24:30:27:2:27:2:0:0:0:27:2:0.069 0/1:134:134.5:-23,-9,-50:76:63:12:63:12:0:0:0:63:12:0.16
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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333 12 108203254 2134_2 N ]7:111053752]N 243.95 . SVTYPE=BND;STRANDS=-+:23;IMPRECISE;CIPOS=-134,20;CIEND=-29,164;CIPOS95=-36,3;CIEND95=-4,72;MATEID=2134_1;EVENT=2134;SECONDARY;SU=23;PE=23;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:3:1.68:-7,-7,-32:42:37:4:37:4:0:0:0:37:4:0.098 0/1:200:242.27:-36,-12,-70:110:90:19:90:19:0:0:0:90:19:0.17
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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334 12 125801144 1470_2 N [12:104359630[N 134.51 . SVTYPE=BND;STRANDS=--:16;IMPRECISE;CIPOS=-202,29;CIEND=-284,29;CIPOS95=-51,3;CIEND95=-85,4;MATEID=1470_1;EVENT=1470;SECONDARY;SU=16;PE=16;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:27:0.01:-3,-6,-24:30:27:2:27:2:0:0:0:27:2:0.069 0/1:134:134.5:-23,-9,-50:76:63:12:63:12:0:0:0:63:12:0.16
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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diff changeset
335 13 35787786 2197_1 N N[X:11952984[ 50.53 . SVTYPE=BND;STRANDS=+-:10;IMPRECISE;CIPOS=-30,224;CIEND=-257,16;CIPOS95=-6,59;CIEND95=-129,2;MATEID=2197_2;EVENT=2197;SU=10;PE=10;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:200:0:-0,-20,-67:68:68:0:67:0:32:0:0:35:0:0 0/1:50:50.53:-16,-11,-53:74:64:9:64:9:0:0:0:64:9:0.12
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
336 13 38071947 1496 N <DEL> 149.28 . SVTYPE=DEL;SVLEN=-13627;END=38085574;STRANDS=+-:14;IMPRECISE;CIPOS=-30,247;CIEND=-177,29;CIPOS95=-5,64;CIEND95=-60,3;SU=14;PE=14;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:123:0:-1,-14,-48:54:51:2:50:1:25:0:0:25:1:0.02 0/1:149:149.28:-29,-14,-76:113:95:17:94:16:41:0:4:53:12:0.15
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
337 13 59377693 1961_2 N [1:66804423[N 23.75 . SVTYPE=BND;STRANDS=--:6;IMPRECISE;CIPOS=-240,29;CIEND=-294,16;CIPOS95=-83,5;CIEND95=-142,1;MATEID=1961_1;EVENT=1961;SECONDARY;SU=6;PE=6;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:12:0.25:-5,-6,-27:35:31:3:31:3:0:0:0:31:3:0.088 0/1:23:23.49:-16,-13,-62:83:73:9:73:9:0:0:0:73:9:0.11
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
338 13 61315891 1962_2 N ]1:221827800]N 53.72 . SVTYPE=BND;STRANDS=-+:6;IMPRECISE;CIPOS=-349,29;CIEND=-30,271;CIPOS95=-139,3;CIEND95=-3,117;MATEID=1962_1;EVENT=1962;SECONDARY;SU=6;PE=6;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:81:0:-0,-8,-27:28:28:0:27:0:14:0:0:13:0:0 0/1:53:53.72:-11,-6,-30:43:36:6:36:6:0:0:0:36:6:0.14
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
339 13 74915300 1519 N <DEL> 184.96 . SVTYPE=DEL;SVLEN=-1446;END=74916746;STRANDS=+-:28;IMPRECISE;CIPOS=-23,129;CIEND=-132,14;CIPOS95=-5,39;CIEND95=-32,4;SU=28;PE=28;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:15:0.12:-12,-13,-59:77:69:8:68:7:34:0:1:34:6:0.093 0/1:184:184.84:-43,-24,-126:181:155:25:154:24:83:0:3:71:21:0.13
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
340 13 89421953 1532 N <DEL> 77.64 . SVTYPE=DEL;SVLEN=-979;END=89422932;STRANDS=+-:11;IMPRECISE;CIPOS=-30,215;CIEND=-294,29;CIPOS95=-6,81;CIEND95=-93,4;SU=11;PE=11;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:51:0:-2,-7,-25:28:26:1:26:1:0:0:0:26:1:0.037 0/1:77:77.64:-15,-7,-37:55:46:8:46:8:0:0:0:46:8:0.15
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
341 14 23105069 1552 N <DEL> 93.62 . SVTYPE=DEL;SVLEN=-2881;END=23107950;STRANDS=+-:12;IMPRECISE;CIPOS=-30,205;CIEND=-249,14;CIPOS95=-4,85;CIEND95=-122,0;SU=12;PE=12;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:6:0.95:-4,-4,-18:23:20:2:20:2:0:0:0:20:2:0.091 0/1:92:92.67:-15,-6,-33:50:41:8:41:8:0:0:0:41:8:0.16
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
342 14 32953296 1563 N <DEL> 98.43 . SVTYPE=DEL;SVLEN=-1049;END=32954345;STRANDS=+-:13;IMPRECISE;CIPOS=-30,180;CIEND=-153,29;CIPOS95=-2,51;CIEND95=-40,5;SU=13;PE=13;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:66:0:-6,-13,-52:64:59:4:58:4:29:0:1:29:3:0.065 0/1:98:98.43:-22,-12,-61:89:76:12:75:12:32:0:4:43:8:0.14
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
343 14 41829108 1571 N <DEL> 287.18 . SVTYPE=DEL;SVLEN=-151242;END=41980350;STRANDS=+-:21;IMPRECISE;CIPOS=-30,211;CIEND=-178,29;CIPOS95=-3,57;CIEND95=-39,6;SU=21;PE=21;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:24:0.02:-7,-9,-39:51:45:5:44:4:20:0:0:24:4:0.083 0/1:200:287.17:-42,-13,-79:127:103:23:102:22:54:0:5:48:17:0.18
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
344 14 42486317 1572 N <DEL> 314.35 . SVTYPE=DEL;SVLEN=-317;END=42486634;STRANDS=+-:19;IMPRECISE;CIPOS=-28,175;CIEND=-240,29;CIPOS95=-3,69;CIEND95=-52,6;SU=19;PE=19;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:30:0:-3,-6,-25:33:29:3:28:2:11:0:0:17:2:0.067 0/1:200:314.35:-40,-8,-56:98:76:21:75:20:30:0:2:45:18:0.21
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
345 14 47118175 1586_1 N N]14:63226299] 350.61 . SVTYPE=BND;STRANDS=++:20;IMPRECISE;CIPOS=-30,172;CIEND=-30,155;CIPOS95=-4,77;CIEND95=-4,53;MATEID=1586_2;EVENT=1586;SU=20;PE=20;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:30:0:-2,-5,-18:21:19:1:19:1:0:0:0:19:1:0.05 0/1:200:350.61:-38,-2,-23:54:36:17:36:17:0:0:0:36:17:0.32
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
346 14 60341404 1584 N <DEL> 152.5 . SVTYPE=DEL;SVLEN=-1833;END=60343237;STRANDS=+-:19;IMPRECISE;CIPOS=-21,161;CIEND=-144,26;CIPOS95=-4,51;CIEND95=-39,8;SU=19;PE=19;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:9:0.47:-10,-11,-49:65:58:6:57:6:27:0:3:30:3:0.095 0/1:152:152.03:-36,-20,-105:151:130:20:129:20:65:0:6:64:14:0.13
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
347 14 61058056 1585 N <DEL> 464.07 . SVTYPE=DEL;SVLEN=-1437;END=61059493;STRANDS=+-:27;IMPRECISE;CIPOS=-20,155;CIEND=-147,24;CIPOS95=-2,61;CIEND95=-57,3;SU=27;PE=27;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:39:0:-7,-10,-44:56:50:5:49:4:22:0:2:27:2:0.075 0/1:200:464.07:-58,-11,-78:138:107:30:106:29:54:0:6:52:23:0.21
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
348 14 63226299 1586_2 N N]14:47118175] 350.61 . SVTYPE=BND;STRANDS=++:20;IMPRECISE;CIPOS=-30,155;CIEND=-30,172;CIPOS95=-4,53;CIEND95=-4,77;MATEID=1586_1;EVENT=1586;SECONDARY;SU=20;PE=20;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:30:0:-2,-5,-18:21:19:1:19:1:0:0:0:19:1:0.05 0/1:200:350.61:-38,-2,-23:54:36:17:36:17:0:0:0:36:17:0.32
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
349 14 65842539 1590_1 N N]14:65843134] 290.56 . SVTYPE=BND;STRANDS=++:18;IMPRECISE;CIPOS=-25,172;CIEND=-28,158;CIPOS95=-3,64;CIEND95=-4,52;MATEID=1590_2;EVENT=1590;SU=18;PE=18;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:120:0:-0,-12,-40:42:41:0:40:0:20:0:0:20:0:0 0/1:200:290.56:-33,-4,-33:64:47:16:47:16:0:0:0:47:16:0.25
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
350 14 65843134 1590_2 N N]14:65842539] 290.56 . SVTYPE=BND;STRANDS=++:18;IMPRECISE;CIPOS=-28,158;CIEND=-25,172;CIPOS95=-4,52;CIEND95=-3,64;MATEID=1590_1;EVENT=1590;SECONDARY;SU=18;PE=18;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:120:0:-0,-12,-40:42:41:0:40:0:20:0:0:20:0:0 0/1:200:290.56:-33,-4,-33:64:47:16:47:16:0:0:0:47:16:0.25
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
351 14 71480241 2110_2 N N]6:74156485] 35.69 . SVTYPE=BND;STRANDS=++:7;IMPRECISE;CIPOS=-30,239;CIEND=-30,265;CIPOS95=-5,91;CIEND95=-3,121;MATEID=2110_1;EVENT=2110;SECONDARY;SU=7;PE=7;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:147:0:-0,-15,-49:50:50:0:49:0:24:0:0:25:0:0 0/1:35:35.69:-11,-7,-35:49:42:6:42:6:0:0:0:42:6:0.12
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
352 14 80106294 1596 N <DEL> 362.16 . SVTYPE=DEL;SVLEN=-8751;END=80115045;STRANDS=+-:22;IMPRECISE;CIPOS=-26,145;CIEND=-169,29;CIPOS95=-3,49;CIEND95=-45,8;SU=22;PE=22;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:0:2.85:-9,-9,-39:52:46:5:45:5:23:0:2:22:3:0.1 0/1:200:359.31:-44,-8,-57:102:79:22:78:22:39:0:4:39:18:0.22
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
353 14 90299534 1604_1 N N]14:90302487] 305.41 . SVTYPE=BND;STRANDS=++:24;IMPRECISE;CIPOS=-24,172;CIEND=-28,149;CIPOS95=-2,80;CIEND95=-5,56;MATEID=1604_2;EVENT=1604;SU=24;PE=24;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:24:0.02:-5,-8,-31:39:35:3:35:3:0:0:0:35:3:0.079 0/1:200:305.39:-38,-8,-51:89:69:19:69:19:0:0:0:69:19:0.22
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
354 14 90302487 1604_2 N N]14:90299534] 305.41 . SVTYPE=BND;STRANDS=++:24;IMPRECISE;CIPOS=-28,149;CIEND=-24,172;CIPOS95=-5,56;CIEND95=-2,80;MATEID=1604_1;EVENT=1604;SECONDARY;SU=24;PE=24;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:24:0.02:-5,-8,-31:39:35:3:35:3:0:0:0:35:3:0.079 0/1:200:305.39:-38,-8,-51:89:69:19:69:19:0:0:0:69:19:0.22
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
355 14 106484224 2198_1 N N[15:22486809[ 32.3 . SVTYPE=BND;STRANDS=+-:18;IMPRECISE;CIPOS=-19,183;CIEND=-170,19;CIPOS95=-3,77;CIEND95=-57,2;MATEID=2198_2;EVENT=2198;SU=18;PE=18;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:36:0:-7,-10,-43:53:48:4:48:4:0:0:0:48:4:0.077 0/1:32:32.3:-21,-17,-82:110:97:12:97:12:0:0:0:97:12:0.11
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
356 15 22486809 2198_2 N ]14:106484224]N 32.3 . SVTYPE=BND;STRANDS=-+:18;IMPRECISE;CIPOS=-170,19;CIEND=-19,183;CIPOS95=-57,2;CIEND95=-3,77;MATEID=2198_1;EVENT=2198;SECONDARY;SU=18;PE=18;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:36:0:-7,-10,-43:53:48:4:48:4:0:0:0:48:4:0.077 0/1:32:32.3:-21,-17,-82:110:97:12:97:12:0:0:0:97:12:0.11
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
357 15 39744398 1623 N <DEL> 242.33 . SVTYPE=DEL;SVLEN=-451;END=39744849;STRANDS=+-:18;IMPRECISE;CIPOS=-19,199;CIEND=-178,29;CIPOS95=-2,84;CIEND95=-35,7;SU=18;PE=18;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:18:0.06:-8,-10,-45:58:52:6:51:5:27:0:1:24:4:0.089 0/1:200:242.27:-36,-12,-70:112:91:20:90:19:44:0:6:46:13:0.17
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
358 15 51189306 1963_2 N ]1:119401195]N 41.32 . SVTYPE=BND;STRANDS=-+:14;IMPRECISE;CIPOS=-192,29;CIEND=-30,271;CIPOS95=-71,6;CIEND95=-3,87;MATEID=1963_1;EVENT=1963;SECONDARY;SU=14;PE=14;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:60:0:-5,-11,-43:51:47:3:47:3:0:0:0:47:3:0.06 0/1:41:41.32:-21,-17,-79:107:94:12:94:12:0:0:0:94:12:0.11
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
359 15 52589534 2087_2 N N]5:5595231] 45.28 . SVTYPE=BND;STRANDS=++:8;IMPRECISE;CIPOS=-30,339;CIEND=-30,176;CIPOS95=-2,128;CIEND95=-8,51;MATEID=2087_1;EVENT=2087;SECONDARY;SU=8;PE=8;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:9:0.51:-2,-3,-11:14:12:1:12:1:0:0:0:12:1:0.077 0/1:44:44.77:-10,-5,-25:36:30:5:30:5:0:0:0:30:5:0.14
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
360 15 62706095 1637 N <DEL> 170.38 . SVTYPE=DEL;SVLEN=-1686;END=62707781;STRANDS=+-:15;IMPRECISE;CIPOS=-30,148;CIEND=-194,29;CIPOS95=-8,44;CIEND95=-85,4;SU=15;PE=15;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:108:0:-3,-14,-51:59:55:3:54:2:27:0:0:27:2:0.036 0/1:170:170.38:-28,-11,-62:95:79:16:78:15:35:0:3:43:12:0.16
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
361 15 75867566 2201_1 N N]16:89281701] 110.58 . SVTYPE=BND;STRANDS=++:12;IMPRECISE;CIPOS=-25,222;CIEND=-30,224;CIPOS95=-3,102;CIEND95=-5,81;MATEID=2201_2;EVENT=2201;SU=12;PE=12;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:180:0:-0,-18,-60:62:61:0:60:0:29:0:0:31:0:0 0/1:110:110.58:-19,-8,-42:64:53:10:53:10:0:0:0:53:10:0.16
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
362 16 3354097 2156_2 N N]8:59616000] 4.43 . SVTYPE=BND;STRANDS=++:10;IMPRECISE;CIPOS=-16,247;CIEND=-30,246;CIPOS95=-1,117;CIEND95=-5,81;MATEID=2156_1;EVENT=2156;SECONDARY;SU=10;PE=10;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:159:0:-0,-16,-53:55:54:0:53:0:27:0:0:26:0:0 0/1:2:4.43:-14,-13,-61:80:71:8:71:8:0:0:0:71:8:0.1
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
363 16 13294470 1665 N <DEL> 209.2 . SVTYPE=DEL;SVLEN=-2020;END=13296490;STRANDS=+-:17;IMPRECISE;CIPOS=-30,183;CIEND=-181,29;CIPOS95=-4,82;CIEND95=-40,9;SU=17;PE=17;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:33:0:-7,-10,-42:53:48:5:47:4:22:0:3:25:1:0.078 0/1:200:209.2:-35,-14,-80:122:102:19:101:19:48:0:4:53:15:0.16
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
364 16 33485944 1674 N <DEL> 116.47 . SVTYPE=DEL;SVLEN=-336;END=33486280;STRANDS=+-:10;IMPRECISE;CIPOS=-30,268;CIEND=-264,29;CIPOS95=-4,81;CIEND95=-84,5;SU=10;PE=10;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:18:0.06:-7,-9,-37:47:42:4:42:4:0:0:0:42:4:0.087 0/1:116:116.4:-24,-12,-63:92:78:13:78:13:0:0:0:78:13:0.14
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
365 16 59323740 1969_2 N ]1:234805693]N 20.7 . SVTYPE=BND;STRANDS=-+:7;IMPRECISE;CIPOS=-347,29;CIEND=-30,282;CIPOS95=-138,1;CIEND95=-4,98;MATEID=1969_1;EVENT=1969;SECONDARY;SU=7;PE=7;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:138:0:-0,-14,-46:47:47:0:46:0:24:0:0:22:0:0 0/1:20:20.7:-11,-9,-40:54:47:6:47:6:0:0:0:47:6:0.11
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
366 16 59976476 2174_2 N N]10:68673027] 26.5 . SVTYPE=BND;STRANDS=++:15;IMPRECISE;CIPOS=-30,168;CIEND=-30,194;CIPOS95=-6,53;CIEND95=-7,54;MATEID=2174_1;EVENT=2174;SECONDARY;SU=15;PE=15;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:24:0.02:-7,-9,-39:49:44:4:44:4:0:0:0:44:4:0.083 0/1:26:26.49:-16,-13,-61:82:72:9:72:9:0:0:0:72:9:0.11
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
367 16 69854786 1684 N <DUP> 17.22 . SVTYPE=DUP;SVLEN=4240;END=69859026;STRANDS=-+:9;IMPRECISE;CIPOS=-312,29;CIEND=-24,234;CIPOS95=-109,3;CIEND95=-2,98;SU=9;PE=9;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:16:0.09:-1,-2,-5:34:32:1:32:1:0:0:0:32:1:0.03 0/1:17:17.12:-5,-3,-8:88:80:7:80:7:0:0:0:80:7:0.08
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
368 16 76865795 2140_2 N N[7:127930431[ 138.22 . SVTYPE=BND;STRANDS=+-:20;IMPRECISE;CIPOS=-30,160;CIEND=-179,18;CIPOS95=-5,57;CIEND95=-67,4;MATEID=2140_1;EVENT=2140;SECONDARY;SU=20;PE=20;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:6:0.91:-9,-9,-41:53:47:5:47:5:0:0:0:47:5:0.096 0/1:137:137.32:-27,-14,-72:105:89:15:89:15:0:0:0:89:15:0.14
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
369 16 85302496 1692 N <DEL> 584.31 . SVTYPE=DEL;SVLEN=-1893;END=85304389;STRANDS=+-:24;IMPRECISE;CIPOS=-30,197;CIEND=-197,29;CIPOS95=-6,39;CIEND95=-46,4;SU=24;PE=24;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:33:0:-7,-10,-42:53:48:5:47:4:25:0:3:22:1:0.078 0/1:200:584.31:-63,-4,-43:97:67:29:66:29:33:0:8:33:21:0.31
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
370 16 89281701 2201_2 N N]15:75867566] 110.58 . SVTYPE=BND;STRANDS=++:12;IMPRECISE;CIPOS=-30,224;CIEND=-25,222;CIPOS95=-5,81;CIEND95=-3,102;MATEID=2201_1;EVENT=2201;SECONDARY;SU=12;PE=12;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:180:0:-0,-18,-60:62:61:0:60:0:29:0:0:31:0:0 0/1:110:110.58:-19,-8,-42:64:53:10:53:10:0:0:0:53:10:0.16
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
371 17 7167951 2157_2 N N[8:30145409[ 146.33 . SVTYPE=BND;STRANDS=+-:12;IMPRECISE;CIPOS=-30,192;CIEND=-221,26;CIPOS95=-6,76;CIEND95=-99,4;MATEID=2157_1;EVENT=2157;SECONDARY;SU=12;PE=12;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:84:0:-1,-10,-35:39:37:1:37:1:0:0:0:37:1:0.026 0/1:146:146.33:-28,-13,-69:102:86:15:86:15:0:0:0:86:15:0.15
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
372 17 45634774 1714 N <DEL> 135.29 . SVTYPE=DEL;SVLEN=-510;END=45635284;STRANDS=+-:12;IMPRECISE;CIPOS=-20,235;CIEND=-234,29;CIPOS95=-2,114;CIEND95=-59,6;SU=12;PE=12;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:6:0.92:-7,-8,-33:44:39:4:38:4:17:0:3:21:1:0.095 0/1:134:134.37:-26,-12,-65:97:82:14:81:14:41:0:5:40:9:0.15
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
373 17 46615627 1715 N <DUP> 100.38 . SVTYPE=DUP;SVLEN=1595;END=46617222;STRANDS=-+:19;IMPRECISE;CIPOS=-292,29;CIEND=-30,149;CIPOS95=-88,3;CIEND95=-6,51;SU=19;PE=19;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:1:2.29:-3,-3,-8:79:73:5:72:5:36:0:1:36:4:0.065 0/1:67:98.09:-13,-3,-9:152:134:17:133:17:66:0:4:67:13:0.11
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
374 17 68159938 1722 N <DEL> 140.36 . SVTYPE=DEL;SVLEN=-340;END=68160278;STRANDS=+-:16;IMPRECISE;CIPOS=-29,195;CIEND=-161,23;CIPOS95=-4,92;CIEND95=-49,4;SU=16;PE=16;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:21:0.03:-2,-4,-15:18:16:1:16:1:0:0:0:16:1:0.059 0/1:140:140.32:-27,-13,-71:105:89:15:88:15:41:0:1:47:14:0.15
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
375 17 70815221 1725 N <DEL> 134.65 . SVTYPE=DEL;SVLEN=-6134;END=70821355;STRANDS=+-:14;IMPRECISE;CIPOS=-27,177;CIEND=-217,29;CIPOS95=-4,61;CIEND95=-42,7;SU=14;PE=14;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:24:0.02:-3,-6,-24:29:26:2:26:2:0:0:0:26:2:0.071 0/1:134:134.63:-20,-6,-35:56:45:10:45:10:0:0:0:45:10:0.18
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
376 17 74377266 2002_2 N ]2:153997618]N 23.44 . SVTYPE=BND;STRANDS=-+:14;IMPRECISE;CIPOS=-220,20;CIEND=-30,176;CIPOS95=-101,2;CIEND95=-6,60;MATEID=2002_1;EVENT=2002;SECONDARY;SU=14;PE=14;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:27:0.01:-5,-8,-32:40:36:3:36:3:0:0:0:36:3:0.077 0/1:23:23.43:-17,-15,-70:93:82:10:82:10:0:0:0:82:10:0.11
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
377 18 39585688 1754 N <DEL> 155.16 . SVTYPE=DEL;SVLEN=-625;END=39586313;STRANDS=+-:17;IMPRECISE;CIPOS=-30,251;CIEND=-263,29;CIPOS95=-3,64;CIEND95=-63,6;SU=17;PE=17;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:63:0:-5,-11,-44:54:49:4:48:3:21:0:2:27:1:0.059 0/1:155:155.16:-32,-17,-89:131:111:19:110:18:52:0:4:58:14:0.14
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
378 18 59713754 2004_2 N ]2:77358259]N 4.44 . SVTYPE=BND;STRANDS=-+:11;IMPRECISE;CIPOS=-216,28;CIEND=-19,255;CIPOS95=-83,4;CIEND95=-3,122;MATEID=2004_1;EVENT=2004;SECONDARY;SU=11;PE=11;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:27:0.01:-3,-6,-24:30:27:2:27:2:0:0:0:27:2:0.069 0/1:2:4.43:-14,-13,-61:80:71:8:71:8:0:0:0:71:8:0.1
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
379 18 71711520 2170_2 N N]9:127885505] 26.91 . SVTYPE=BND;STRANDS=++:15;IMPRECISE;CIPOS=-30,276;CIEND=-30,297;CIPOS95=-5,72;CIEND95=-4,85;MATEID=2170_1;EVENT=2170;SECONDARY;SU=15;PE=15;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:9:0.49:-7,-8,-34:44:39:4:39:4:0:0:0:39:4:0.093 0/1:26:26.42:-17,-15,-69:92:81:10:81:10:0:0:0:81:10:0.11
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
380 18 77309929 1788 N <DEL> 431.9 . SVTYPE=DEL;SVLEN=-2166;END=77312095;STRANDS=+-:21;IMPRECISE;CIPOS=-30,218;CIEND=-227,29;CIPOS95=-6,56;CIEND95=-62,3;SU=21;PE=21;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:12:0.26:-2,-3,-12:15:13:1:13:1:0:0:0:13:1:0.071 0/1:140:431.64:-44,-1,-15:47:27:19:27:19:0:0:0:27:19:0.41
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
381 19 15046341 1793 N <DEL> 170.94 . SVTYPE=DEL;SVLEN=-3130;END=15049471;STRANDS=+-:19;IMPRECISE;CIPOS=-25,174;CIEND=-189,20;CIPOS95=-4,71;CIEND95=-84,3;SU=19;PE=19;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:9:0.49:-5,-6,-26:34:30:3:30:3:0:0:0:30:3:0.091 0/1:170:170.44:-27,-10,-54:84:69:14:69:14:0:0:0:69:14:0.17
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
382 19 18835613 2159_2 N N[8:96265720[ 9.02 . SVTYPE=BND;STRANDS=+-:12;IMPRECISE;CIPOS=-30,232;CIEND=-252,29;CIPOS95=-6,64;CIEND95=-81,4;MATEID=2159_1;EVENT=2159;SECONDARY;SU=12;PE=12;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:51:0:-3,-8,-32:38:35:2:35:2:0:0:0:35:2:0.054 0/1:8:9.02:-15,-14,-67:88:78:9:78:9:0:0:0:78:9:0.1
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
383 19 24027918 1971_2 N N]1:28515659] 194.49 . SVTYPE=BND;STRANDS=++:12;IMPRECISE;CIPOS=-30,228;CIEND=-24,212;CIPOS95=-4,73;CIEND95=-4,93;MATEID=1971_1;EVENT=1971;SECONDARY;SU=12;PE=12;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:162:0:-0,-16,-54:56:55:0:54:0:23:0:0:31:0:0 0/1:194:194.49:-27,-8,-47:76:61:14:61:14:0:0:0:61:14:0.19
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
384 19 24033135 1972_2 N N[1:168024578[ 4.57 . SVTYPE=BND;STRANDS=+-:8;IMPRECISE;CIPOS=-30,210;CIEND=-274,18;CIPOS95=-6,75;CIEND95=-129,2;MATEID=1972_1;EVENT=1972;SECONDARY;SU=8;PE=8;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:27:0.01:-2,-4,-17:20:18:1:18:1:0:0:0:18:1:0.053 0/1:2:4.56:-9,-8,-38:50:44:5:44:5:0:0:0:44:5:0.1
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
385 19 51077891 1805 N <DEL> 68.37 . SVTYPE=DEL;SVLEN=-4630;END=51082521;STRANDS=+-:11;IMPRECISE;CIPOS=-30,317;CIEND=-217,29;CIPOS95=-4,104;CIEND95=-93,4;SU=11;PE=11;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:60:0:-3,-9,-35:42:39:3:38:2:18:0:1:20:1:0.05 0/1:68:68.37:-21,-14,-71:99:86:12:85:12:45:0:4:40:8:0.12
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
386 19 52567370 2007_2 N [2:178351450[N 56.6 . SVTYPE=BND;STRANDS=--:10;IMPRECISE;CIPOS=-244,28;CIEND=-283,29;CIPOS95=-104,2;CIEND95=-100,4;MATEID=2007_1;EVENT=2007;SECONDARY;SU=10;PE=10;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:45:0:-2,-6,-23:26:24:1:24:1:0:0:0:24:1:0.04 0/1:56:56.6:-15,-9,-44:62:53:8:53:8:0:0:0:53:8:0.13
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
387 19 52567638 2006_2 N N]2:178351470] 110.71 . SVTYPE=BND;STRANDS=++:10;IMPRECISE;CIPOS=-30,187;CIEND=-30,147;CIPOS95=-6,54;CIEND95=-4,36;MATEID=2006_1;EVENT=2006;SECONDARY;SU=10;PE=10;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:84:0:-0,-8,-28:30:29:0:28:0:11:0:0:17:0:0 0/1:110:110.71:-16,-5,-27:44:35:8:35:8:0:0:0:35:8:0.19
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
diff changeset
388 20 231409 2039_2 N N]3:184156702] 74.64 . SVTYPE=BND;STRANDS=++:7;IMPRECISE;CIPOS=-30,347;CIEND=-30,247;CIPOS95=-1,138;CIEND95=-3,103;MATEID=2039_1;EVENT=2039;SECONDARY;SU=7;PE=7;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:144:0:-0,-14,-48:50:49:0:48:0:26:0:0:22:0:0 0/1:74:74.64:-15,-7,-38:56:47:8:47:8:0:0:0:47:8:0.15
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
parents:
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389 20 3821170 1819 N <DEL> 65.56 . SVTYPE=DEL;SVLEN=-3950;END=3825120;STRANDS=+-:13;IMPRECISE;CIPOS=-30,160;CIEND=-326,29;CIPOS95=-7,48;CIEND95=-114,2;SU=13;PE=13;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:129:0:-3,-16,-58:65:62:3:61:2:29:0:0:32:2:0.032 0/1:65:65.56:-16,-10,-49:69:59:9:59:9:0:0:0:59:9:0.13
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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399 X 55702382 1903 N <DEL> 179.79 . SVTYPE=DEL;SVLEN=-7503;END=55709885;STRANDS=+-:6;IMPRECISE;CIPOS=-30,263;CIEND=-286,29;CIPOS95=-2,105;CIEND95=-132,3;SU=6;PE=6;SR=0;AC=1;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:27:0.01:-2,-4,-17:21:19:1:18:1:8:0:1:10:0:0.053 0/1:123:179.78:-20,-2,-14:32:22:9:21:9:9:0:5:12:4:0.3
ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
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ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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ad8853ee9909 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
artbio
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