Mercurial > repos > artbio > lumpy_smoove
diff test-data/result-3.vcf @ 9:7dcf61950215 draft
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 5f62b58c65917afbb018296568c81ad132106012
| author | artbio |
|---|---|
| date | Wed, 05 Apr 2023 15:56:13 +0000 |
| parents | b4dec06d8fc6 |
| children | 8711df965d4b |
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--- a/test-data/result-3.vcf Sun May 09 17:09:33 2021 +0000 +++ b/test-data/result-3.vcf Wed Apr 05 15:56:13 2023 +0000 @@ -1,6 +1,6 @@ ##fileformat=VCFv4.2 ##FILTER=<ID=PASS,Description="All filters passed"> -##fileDate=20210508 +##fileDate=20230405 ##reference=reference.fa ##INFO=<ID=SVTYPE,Number=1,Type=String,Description="Type of structural variant"> ##INFO=<ID=SVLEN,Number=.,Type=Integer,Description="Difference in length between REF and ALT alleles"> @@ -45,15 +45,15 @@ ##FORMAT=<ID=AP,Number=A,Type=Integer,Description="Alternate allele paired-end observation count, with partial observations recorded fractionally"> ##FORMAT=<ID=AB,Number=A,Type=Float,Description="Allele balance, fraction of observations from alternate allele, QA/(QR+QA)"> ##contig=<ID=chrI,length=15072434> -##smoove_version=0.2.5 -##smoove_count_stats=celegans-2:2531,2421,156,296 +##smoove_version=0.2.8 ##smoove_count_stats=celegans-1:2869,2691,202,330 +##smoove_count_stats=celegans-2:2531,2421,156,296 ##source=LUMPY -##bcftools_annotateVersion=1.10.2+htslib-1.10.2 -##bcftools_annotateCommand=annotate -x INFO/PRPOS,INFO/PREND -Ou; Date=Sat May 8 19:21:48 2021 +##bcftools_annotateVersion=1.16+htslib-1.17 +##bcftools_annotateCommand=annotate -x INFO/PRPOS,INFO/PREND -Ou; Date=Wed Apr 5 13:41:07 2023 ##INFO=<ID=AC,Number=A,Type=Integer,Description="Allele count in genotypes"> ##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in called genotypes"> -##bcftools_viewVersion=1.10.2+htslib-1.10.2 -##bcftools_viewCommand=view -c 1 -Oz -c 1 -o output-smoove.genotyped.vcf.gz; Date=Sat May 8 19:21:48 2021 +##bcftools_viewVersion=1.16+htslib-1.17 +##bcftools_viewCommand=view -c 1 -Oz -c 1 -o output-smoove.genotyped.vcf.gz; Date=Wed Apr 5 13:41:07 2023 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT celegans-2 celegans-1 chrI 10416569 1 N <DUP> 170.7 . SVTYPE=DUP;SVLEN=981;END=10417550;STRANDS=-+:4;IMPRECISE;CIPOS=-769,29;CIEND=-30,636;CIPOS95=-165,8;CIEND95=-9,128;SU=4;PE=4;SR=0;AC=4;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 1/1:3:40.43:-4,-1,-1:7:4:3:4:3:0:0:0:4:3:0.43 1/1:16:130.28:-15,-4,-2:14:4:9:4:9:0:0:0:4:9:0.69