Mercurial > repos > artbio > lumpy_smoove

diff lumpy_smoove.xml @ 6:ad8853ee9909 draft

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"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 7d69f5c91e7ec5e252e9728fdfb0f7bcc254bf24"
author artbio
date Sun, 14 Feb 2021 23:59:42 +0000
parents bd4135caa3fa
children 8b0005fdfd04
line wrap: on
line diff
--- a/lumpy_smoove.xml	Fri Sep 25 10:43:20 2020 +0000
+++ b/lumpy_smoove.xml	Sun Feb 14 23:59:42 2021 +0000
@@ -1,4 +1,4 @@
-<tool id="lumpy_smoove" name="lumpy_smoove" version="0.2.5+galaxy5">
+<tool id="lumpy_smoove" name="lumpy_smoove" version="0.2.5+galaxy6">
     <description>find structural variants using the smoove workflow</description>
     <macros>
         <import>macro_lumpy_smoove.xml</import>
@@ -102,7 +102,7 @@
             <param name="choices" value="yes"/>
             <param name="bedmask" value="exclude.bed"/>
             <param name="prpos" value="no"/>
-            <output name="vcf_call" ftype="vcf" file="result-6.vcf" lines_diff="8"/>
+            <output name="vcf_call" ftype="vcf" file="result-6.vcf" lines_diff="12"/>
         </test>
         <test>
             <param name="reference_source_selector" value="history" />
@@ -112,7 +112,7 @@
             <param name="choices" value="yes"/>
             <param name="bedmask" value="exclude.bed"/>
             <param name="prpos" value="no"/>
-            <output name="vcf_call" ftype="vcf" file="result-1.vcf" lines_diff="8"/>
+            <output name="vcf_call" ftype="vcf" file="result-1.vcf" lines_diff="12"/>
         </test>
         <test>
             <param name="reference_source_selector" value="history" />
@@ -121,7 +121,7 @@
             <param name="tumor_bam" value="celegans_RG_2.bam"/>
             <param name="choices" value="no"/>
             <param name="prpos" value="no"/>
-            <output name="vcf_call" ftype="vcf" file="result-2.vcf" lines_diff="8"/>
+            <output name="vcf_call" ftype="vcf" file="result-2.vcf" lines_diff="12"/>
         </test>
         <test>
             <param name="reference_source_selector" value="history" />
@@ -130,7 +130,7 @@
             <param name="tumor_bam" value="celegans_RG_1.bam"/>
             <param name="choices" value="no"/>
             <param name="prpos" value="no"/>
-            <output name="vcf_call" ftype="vcf" file="result-3.vcf" lines_diff="8"/>
+            <output name="vcf_call" ftype="vcf" file="result-3.vcf" lines_diff="12"/>
         </test>
         <test>
             <param name="reference_source_selector" value="history" />
@@ -139,7 +139,7 @@
             <param name="tumor_bam" value="celegans_RG_2.bam"/>
             <param name="choices" value="no"/>
             <param name="prpos" value="yes"/>
-            <output name="vcf_call" ftype="vcf" file="result-4.vcf" lines_diff="8"/>
+            <output name="vcf_call" ftype="vcf" file="result-4.vcf" lines_diff="12"/>
         </test>
         <test>
             <param name="reference_source_selector" value="history" />
@@ -148,7 +148,7 @@
             <param name="single_bam" value="celegans_RG_1.bam"/>
             <param name="choices" value="no"/>
             <param name="prpos" value="no"/>
-            <output name="vcf_call" ftype="vcf" file="result-5.vcf" lines_diff="8"/>
+            <output name="vcf_call" ftype="vcf" file="result-5.vcf" lines_diff="12"/>
         </test>
     </tests>