Mercurial > repos > artbio > lumpy_smoove
diff test-data/result-1.vcf @ 8:b4dec06d8fc6 draft
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 51dc6c56c7d95fc229ffee958354211cd454fd36"
| author | artbio |
|---|---|
| date | Sun, 09 May 2021 17:09:33 +0000 |
| parents | 65b400409455 |
| children | 7dcf61950215 |
line wrap: on
line diff
--- a/test-data/result-1.vcf Sun Apr 18 17:08:22 2021 +0000 +++ b/test-data/result-1.vcf Sun May 09 17:09:33 2021 +0000 @@ -1,6 +1,6 @@ ##fileformat=VCFv4.2 ##FILTER=<ID=PASS,Description="All filters passed"> -##fileDate=20200826 +##fileDate=20210508 ##reference=reference.fa ##INFO=<ID=SVTYPE,Number=1,Type=String,Description="Type of structural variant"> ##INFO=<ID=SVLEN,Number=.,Type=Integer,Description="Difference in length between REF and ALT alleles"> @@ -46,14 +46,14 @@ ##FORMAT=<ID=AB,Number=A,Type=Float,Description="Allele balance, fraction of observations from alternate allele, QA/(QR+QA)"> ##contig=<ID=chrI,length=15072434> ##smoove_version=0.2.5 +##smoove_count_stats=celegans-1:2869,2691,194,304 ##smoove_count_stats=celegans-2:2531,2421,134,276 -##smoove_count_stats=celegans-1:2869,2691,194,304 ##source=LUMPY ##bcftools_annotateVersion=1.10.2+htslib-1.10.2 -##bcftools_annotateCommand=annotate -x INFO/PRPOS,INFO/PREND -Ou; Date=Wed Aug 26 16:53:42 2020 +##bcftools_annotateCommand=annotate -x INFO/PRPOS,INFO/PREND -Ou; Date=Sat May 8 19:20:12 2021 ##INFO=<ID=AC,Number=A,Type=Integer,Description="Allele count in genotypes"> ##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in called genotypes"> ##bcftools_viewVersion=1.10.2+htslib-1.10.2 -##bcftools_viewCommand=view -c 1 -Oz -c 1 -o output-smoove.genotyped.vcf.gz; Date=Wed Aug 26 16:53:42 2020 +##bcftools_viewCommand=view -c 1 -Oz -c 1 -o output-smoove.genotyped.vcf.gz; Date=Sat May 8 19:20:12 2021 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT celegans-1 celegans-2 chrI 10416569 1 N <DUP> 170.7 . SVTYPE=DUP;SVLEN=981;END=10417550;STRANDS=-+:4;IMPRECISE;CIPOS=-769,29;CIEND=-30,636;CIPOS95=-165,8;CIEND95=-9,128;SU=4;PE=4;SR=0;AC=4;AN=4 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 1/1:16:130.28:-15,-4,-2:14:4:9:4:9:0:0:0:4:9:0.69 1/1:3:40.43:-4,-1,-1:7:4:3:4:3:0:0:0:4:3:0.43