diff test-data/result-4.vcf @ 8:b4dec06d8fc6 draft

"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 51dc6c56c7d95fc229ffee958354211cd454fd36"
author artbio
date Sun, 09 May 2021 17:09:33 +0000
parents 65b400409455
children 8711df965d4b
line wrap: on
line diff
--- a/test-data/result-4.vcf	Sun Apr 18 17:08:22 2021 +0000
+++ b/test-data/result-4.vcf	Sun May 09 17:09:33 2021 +0000
@@ -1,6 +1,6 @@
 ##fileformat=VCFv4.2
 ##FILTER=<ID=PASS,Description="All filters passed">
-##fileDate=20200826
+##fileDate=20210508
 ##reference=reference.fa
 ##INFO=<ID=SVTYPE,Number=1,Type=String,Description="Type of structural variant">
 ##INFO=<ID=SVLEN,Number=.,Type=Integer,Description="Difference in length between REF and ALT alleles">
@@ -48,12 +48,12 @@
 ##FORMAT=<ID=AB,Number=A,Type=Float,Description="Allele balance, fraction of observations from alternate allele, QA/(QR+QA)">
 ##contig=<ID=chrI,length=15072434>
 ##smoove_version=0.2.5
+##smoove_count_stats=celegans-2:2531,2421,156,296
 ##smoove_count_stats=celegans-1:2869,2691,202,330
-##smoove_count_stats=celegans-2:2531,2421,156,296
 ##source=LUMPY
 ##INFO=<ID=AC,Number=A,Type=Integer,Description="Allele count in genotypes">
 ##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in called genotypes">
 ##bcftools_viewVersion=1.10.2+htslib-1.10.2
-##bcftools_viewCommand=view -O z -c 1 -o output-smoove.genotyped.vcf.gz; Date=Wed Aug 26 16:57:03 2020
+##bcftools_viewCommand=view -O z -c 1 -o output-smoove.genotyped.vcf.gz; Date=Sat May  8 19:22:36 2021
 #CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	celegans-1	celegans-2
 chrI	10416569	1	N	<DUP>	170.7	.	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