view tool-data/all_fasta.loc.sample @ 5:bd4135caa3fa draft

"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_smoove commit 627bb5344b7d86c0b7ca7235ea3636269613dc32"
author artbio
date Fri, 25 Sep 2020 10:43:20 +0000
parents 41e68da5c0fe
children
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#This file lists the locations and dbkeys of all the fasta files
#under the "genome" directory (a directory that contains a directory
#for each build). The script extract_fasta.py will generate the file
#all_fasta.loc. This file has the format (white space characters are
#TAB characters):
#
#<unique_build_id>  <dbkey> <display_name>  <file_path>
#
#So, all_fasta.loc could look something like this:
#
#apiMel3    apiMel3 Honeybee (Apis mellifera): apiMel3  /path/to/genome/apiMel3/apiMel3.fa
#hg19canon  hg19    Human (Homo sapiens): hg19 Canonical    /path/to/genome/hg19/hg19canon.fa
#hg19full   hg19    Human (Homo sapiens): hg19 Full /path/to/genome/hg19/hg19full.fa
#
#Your all_fasta.loc file should contain an entry for each individual
#fasta file. So there will be multiple fasta files for each build,
#such as with hg19 above.
#