Mercurial > repos > artbio > manta

comparison manta_macros.xml @ 2:6a69e5d7c21f draft

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"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/manta commit 0c076cce96ddede06511d9fb8ebc707b9f083a1d"
author artbio
date Sun, 07 Jun 2020 09:08:06 -0400
parents c35d9902100e
children d648e40c6da9
comparison
equal deleted inserted replaced
1:c35d9902100e 2:6a69e5d7c21f
1 <macros> 1 <macros>
2 2
3 <token name="@VERSION@">1.6</token> 3 <token name="@VERSION@">1.6</token>
4 <token name="@WRAPPER_VERSION@">@VERSION@+galaxy3</token> 4 <token name="@WRAPPER_VERSION@">@VERSION@+galaxy4</token>
5 <token name="@pipefail@"><![CDATA[set -o | grep -q pipefail && set -o pipefail;]]></token> 5 <token name="@pipefail@"><![CDATA[set -o | grep -q pipefail && set -o pipefail;]]></token>
6 6
7 <token name="@set_reference_fasta_filename@"><![CDATA[ 7 <token name="@set_reference_fasta_filename@"><![CDATA[
8 #set $reference_fasta_filename = "localref.fa" 8 #set $reference_fasta_filename = "localref.fa"
9 9
49 <option value="cached">Use a built-in genome index</option> 49 <option value="cached">Use a built-in genome index</option>
50 <option value="history">Use a genome from history and build index</option> 50 <option value="history">Use a genome from history and build index</option>
51 </param> 51 </param>
52 <when value="cached"> 52 <when value="cached">
53 <param name="index" type="select" label="Using reference genome" help="Select genome from the list"> 53 <param name="index" type="select" label="Using reference genome" help="Select genome from the list">
54 <options from_data_table="all_fasta"> 54 <options from_data_table="fasta_indexes">
55 <filter type="sort_by" column="2" /> 55 <filter type="sort_by" column="2" />
56 <validator type="no_options" message="No indexes are available" /> 56 <validator type="no_options" message="No indexes are available" />
57 </options> 57 </options>
58 <validator type="no_options" message="A built-in reference genome is not available for the build associated with the selected input file"/> 58 <validator type="no_options" message="A built-in reference genome is not available for the build associated with the selected input file"/>
59 </param> 59 </param>