--- a/manta_macros.xml	Thu Jun 08 17:36:38 2023 +0000
+++ b/manta_macros.xml	Tue Feb 20 08:31:27 2024 +0000
@@ -1,17 +1,18 @@
 <macros>
 
     <token name="@TOOL_VERSION@">1.6</token>
-    <token name="@VERSION_SUFFIX@">8</token>
+    <token name="@VERSION_SUFFIX@">9</token>
+    <token name="@PROFILE@">20.05</token>
     <token name="@pipefail@"><![CDATA[set -o | grep -q pipefail && set -o pipefail;]]></token>
 
     <token name="@set_reference_fasta_filename@"><![CDATA[
     #set $reference_fasta_filename = "localref.fa"
 
     #if str( $reference_source.reference_source_selector ) == "history":
-    ln -s '${reference_source.ref_file}' '${reference_fasta_filename}' &&
-    samtools faidx '${reference_fasta_filename}' 2>&1 || echo "Error running samtools faidx for Manta" >&2 &&
+        ln -s '${reference_source.ref_file}' '${reference_fasta_filename}' &&
+        samtools faidx '${reference_fasta_filename}' 2>&1 || echo "Error running samtools faidx for Manta" >&2 &&
     #else:
-    #set $reference_fasta_filename = str( $reference_source.index.fields.path )
+        #set $reference_fasta_filename = str( $reference_source.index.fields.path )
     #end if
     ]]></token>
 
@@ -28,8 +29,8 @@
 
     <xml name="requirements">
         <requirements>
+            <requirement type="package" version="@TOOL_VERSION@">manta</requirement>
             <requirement type="package" version="1.7">samtools</requirement>
-            <requirement type="package" version="@TOOL_VERSION@">manta</requirement>
         </requirements>
     </xml>