Mercurial > repos > artbio > mapping_quality_stats

comparison mapping_quality_stats.xml @ 2:ce2d8f611a51 draft default tip

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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/main/tools/mapping_quality_stats commit 2661225fdd0f533d4dc8e2561ea559fcc00b9128
author artbio
date Sat, 10 Feb 2024 01:32:48 +0000
parents 7883d97fa479
children
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1:7883d97fa479 2:ce2d8f611a51
1 <tool id="mapqstatistics" name="Mapping Quality Stats" version="0.19.1+galaxy0"> 1 <tool id="mapqstatistics" name="Mapping Quality Stats" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
2 <description></description> 2 <description></description>
3 <requirements> 3 <macros>
4 <requirement type="package" version="1.7.1">r-optparse</requirement> 4 <token name="@TOOL_VERSION@">0.22.0</token>
5 <requirement type="package" version="3.3.6">r-ggplot2</requirement> 5 <token name="@VERSION_SUFFIX@">0</token>
6 <requirement type="package" version="0.19.1">pysam</requirement> 6 <token name="@PROFILE@">23.0</token>
7 </requirements> 7 </macros>
8 <requirements>
9 <requirement type="package" version="1.7.4">r-optparse</requirement>
10 <requirement type="package" version="3.4.4">r-ggplot2</requirement>
11 <requirement type="package" version="@TOOL_VERSION@">pysam</requirement>
12 </requirements>
8 <stdio> 13 <stdio>
9 <exit_code range="1:" level="fatal" description="Tool exception" /> 14 <exit_code range="1:" level="fatal" description="Tool exception" />
10 </stdio> 15 </stdio>
11 <command detect_errors="exit_code"><![CDATA[ 16 <command detect_errors="exit_code"><![CDATA[
12 ln -f -s $input.metadata.bam_index input.bam.bai && 17 ln -f -s $input.metadata.bam_index input.bam.bai &&