Mercurial > repos > artbio > mapping_quality_stats
comparison mapping_quality_stats.xml @ 2:ce2d8f611a51 draft default tip
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/main/tools/mapping_quality_stats commit 2661225fdd0f533d4dc8e2561ea559fcc00b9128
author | artbio |
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date | Sat, 10 Feb 2024 01:32:48 +0000 |
parents | 7883d97fa479 |
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1:7883d97fa479 | 2:ce2d8f611a51 |
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1 <tool id="mapqstatistics" name="Mapping Quality Stats" version="0.19.1+galaxy0"> | 1 <tool id="mapqstatistics" name="Mapping Quality Stats" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@"> |
2 <description></description> | 2 <description></description> |
3 <requirements> | 3 <macros> |
4 <requirement type="package" version="1.7.1">r-optparse</requirement> | 4 <token name="@TOOL_VERSION@">0.22.0</token> |
5 <requirement type="package" version="3.3.6">r-ggplot2</requirement> | 5 <token name="@VERSION_SUFFIX@">0</token> |
6 <requirement type="package" version="0.19.1">pysam</requirement> | 6 <token name="@PROFILE@">23.0</token> |
7 </requirements> | 7 </macros> |
8 <requirements> | |
9 <requirement type="package" version="1.7.4">r-optparse</requirement> | |
10 <requirement type="package" version="3.4.4">r-ggplot2</requirement> | |
11 <requirement type="package" version="@TOOL_VERSION@">pysam</requirement> | |
12 </requirements> | |
8 <stdio> | 13 <stdio> |
9 <exit_code range="1:" level="fatal" description="Tool exception" /> | 14 <exit_code range="1:" level="fatal" description="Tool exception" /> |
10 </stdio> | 15 </stdio> |
11 <command detect_errors="exit_code"><![CDATA[ | 16 <command detect_errors="exit_code"><![CDATA[ |
12 ln -f -s $input.metadata.bam_index input.bam.bai && | 17 ln -f -s $input.metadata.bam_index input.bam.bai && |