Mercurial > repos > artbio > mapping_quality_stats

diff mapping_quality_stats.r @ 2:ce2d8f611a51 draft default tip

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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/main/tools/mapping_quality_stats commit 2661225fdd0f533d4dc8e2561ea559fcc00b9128
author artbio
date Sat, 10 Feb 2024 01:32:48 +0000
parents f00479673d47
children
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--- a/mapping_quality_stats.r	Wed Jun 15 15:37:11 2022 +0000
+++ b/mapping_quality_stats.r	Sat Feb 10 01:32:48 2024 +0000
@@ -1,9 +1,9 @@
 ## Setup R error handling to go to stderr
 options(show.error.messages = FALSE,
-        error = function() {
-            cat(geterrmessage(), file = stderr())
-            q("no", 1, FALSE)
-        }
+    error = function() {
+        cat(geterrmessage(), file = stderr())
+        q("no", 1, FALSE)
+    }
 )
 
 
@@ -14,7 +14,7 @@
 option_list <- list(
     make_option(c("-i", "--input"), type = "character", help = "Path to tabular file"),
     make_option(c("-o", "--output"), type = "character", help = "path to the pdf plot")
-    )
+)
 
 parser <- OptionParser(usage = "%prog [options] file", option_list = option_list)
 args <- parse_args(parser)