Mercurial > repos > artbio > metavisitor_2_workflows
comparison Galaxy-Workflow-Metavisitor__Workflow_for_Use_Case_3-1.ga @ 0:c375489bbcb0 draft
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows/metavisitor_2_workflows commit ecf95caa7d5e9ab001a75cbf5fb306e7ecd3def3
author | artbio |
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date | Sun, 21 Jul 2019 19:22:52 -0400 |
parents | |
children | 6396f06de8a9 |
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561 "outputs": [ | |
562 { | |
563 "type": "tabular", | |
564 "name": "tabularOutput" | |
565 }, | |
566 { | |
567 "type": "fasta", | |
568 "name": "fastaOutput" | |
569 }, | |
570 { | |
571 "type": "fasta", | |
572 "name": "al_sequences" | |
573 }, | |
574 { | |
575 "type": "fasta", | |
576 "name": "un_sequences" | |
577 } | |
578 ], | |
579 "post_job_actions": { | |
580 "HideDatasetActional_sequences": { | |
581 "output_name": "al_sequences", | |
582 "action_type": "HideDatasetAction", | |
583 "action_arguments": {} | |
584 }, | |
585 "RenameDatasetActiontabularOutput": { | |
586 "output_name": "tabularOutput", | |
587 "action_type": "RenameDatasetAction", | |
588 "action_arguments": { | |
589 "newname": "Viral identification" | |
590 } | |
591 }, | |
592 "HideDatasetActionun_sequences": { | |
593 "output_name": "un_sequences", | |
594 "action_type": "HideDatasetAction", | |
595 "action_arguments": {} | |
596 }, | |
597 "HideDatasetActionfastaOutput": { | |
598 "output_name": "fastaOutput", | |
599 "action_type": "HideDatasetAction", | |
600 "action_arguments": {} | |
601 } | |
602 }, | |
603 "workflow_outputs": [ | |
604 { | |
605 "output_name": "tabularOutput", | |
606 "uuid": "d3602ec6-86ee-4b7a-b640-c79ddb4091f0", | |
607 "label": null | |
608 } | |
609 ], | |
610 "annotation": "", | |
611 "content_id": "toolshed.g2.bx.psu.edu/repos/artbio/blastparser_and_hits/BlastParser_and_hits/2.6.1", | |
612 "input_connections": { | |
613 "blast": { | |
614 "output_name": "output1", | |
615 "id": 7 | |
616 }, | |
617 "sequences": { | |
618 "output_name": "transcripts", | |
619 "id": 6 | |
620 } | |
621 }, | |
622 "inputs": [ | |
623 { | |
624 "name": "blast", | |
625 "description": "runtime parameter for tool Parse blast output and compile hits" | |
626 }, | |
627 { | |
628 "name": "sequences", | |
629 "description": "runtime parameter for tool Parse blast output and compile hits" | |
630 } | |
631 ], | |
632 "position": { | |
633 "top": 751, | |
634 "left": 2347 | |
635 }, | |
636 "tool_state": "{\"__page__\": null, \"flanking\": \"\\\"5\\\"\", \"additional_filters\": \"{\\\"__current_case__\\\": 0, \\\"use_filters\\\": \\\"no\\\"}\", \"__rerun_remap_job_id__\": null, \"mode\": \"\\\"verbose\\\"\", \"sequences\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"blast\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\"}", | |
637 "label": "Get annotated contigs", | |
638 "type": "tool", | |
639 "id": 8, | |
640 "tool_shed_repository": { | |
641 "owner": "artbio", | |
642 "changeset_revision": "b4c9c085d709", | |
643 "name": "blastparser_and_hits", | |
644 "tool_shed": "toolshed.g2.bx.psu.edu" | |
645 }, | |
646 "name": "Parse blast output and compile hits" | |
647 } | |
648 }, | |
649 "annotation": "", | |
650 "name": "Metavisitor: Workflow for Use Case 3-1" | |
651 } |