Mercurial > repos > artbio > metavisitor_2_workflows
diff Galaxy-Workflow-Metavisitor__Workflow_for_proteic_vir2_generation.ga @ 0:c375489bbcb0 draft
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows/metavisitor_2_workflows commit ecf95caa7d5e9ab001a75cbf5fb306e7ecd3def3
author | artbio |
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date | Sun, 21 Jul 2019 19:22:52 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/Galaxy-Workflow-Metavisitor__Workflow_for_proteic_vir2_generation.ga Sun Jul 21 19:22:52 2019 -0400 @@ -0,0 +1,67 @@ +{ + "a_galaxy_workflow": "true", + "uuid": "224bad2a-247c-492d-b0ab-7d4ca6241d90", + "tags": [], + "format-version": "0.1", + "version": 0, + "steps": { + "0": { + "tool_id": "toolshed.g2.bx.psu.edu/repos/artbio/fetch_fasta_from_ncbi/retrieve_fasta_from_NCBI/2.3.0", + "errors": null, + "uuid": "9c3e474c-3e57-4378-a5cc-ef9c6b7b092a", + "tool_version": "2.3.0", + "outputs": [ + { + "type": "fasta", + "name": "outfile" + }, + { + "type": "txt", + "name": "logfile" + } + ], + "post_job_actions": { + "RenameDatasetActionoutfile": { + "output_name": "outfile", + "action_type": "RenameDatasetAction", + "action_arguments": { + "newname": "Vir2" + } + } + }, + "workflow_outputs": [ + { + "output_name": "outfile", + "uuid": "c65e9a65-8c83-4caa-930a-347711a3e030", + "label": null + }, + { + "output_name": "logfile", + "uuid": "990bc867-6319-4e49-825c-72093dbd7b14", + "label": null + } + ], + "annotation": "", + "content_id": "toolshed.g2.bx.psu.edu/repos/artbio/fetch_fasta_from_ncbi/retrieve_fasta_from_NCBI/2.3.0", + "input_connections": {}, + "inputs": [], + "position": { + "top": 275, + "left": 261 + }, + "tool_state": "{\"__page__\": null, \"__rerun_remap_job_id__\": null, \"queryString\": \"\\\"txid10239[Organism] NOT txid131567[Organism] NOT phage[All Fields] NOT patent[All Fields] NOT chimeric[Title] NOT vector[Title] NOT method[Title] NOT X174[All Fields] AND 30:9000[Sequence length]\\\"\", \"dbname\": \"\\\"protein\\\"\", \"dry_run\": \"\\\"false\\\"\"}", + "label": "Vir2", + "type": "tool", + "id": 0, + "tool_shed_repository": { + "owner": "artbio", + "changeset_revision": "c667d0ee39f5", + "name": "fetch_fasta_from_ncbi", + "tool_shed": "toolshed.g2.bx.psu.edu" + }, + "name": "Retrieve FASTA from NCBI" + } + }, + "annotation": "", + "name": "Metavisitor: Workflow for proteic vir2 generation" +}