Mercurial > repos > artbio > mircounts

diff mircounts.py @ 9:2a08a6eb471c draft

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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mircounts commit 6013aaf29ff7aa2d1aab434f2355da327c7ef102
author artbio
date Wed, 25 Apr 2018 12:48:27 -0400
parents da1aa7de2b19
children b045c30fb768
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--- a/mircounts.py	Mon Apr 23 13:21:16 2018 -0400
+++ b/mircounts.py	Wed Apr 25 12:48:27 2018 -0400
@@ -64,7 +64,7 @@
             gff_fields = line[:-1].split("\t")
             if gff_fields[2] == 'miRNA':
                 mir_name = gff_fields[0]
-                premir_name = gff_fields[8].split('=')[-1]
+                premir_name = gff_fields[8].split('Parent_mir_Name=')[-1]
                 mir_start = int(gff_fields[3])
                 mir_end = int(gff_fields[4])
                 # GFF is 1-based, pysam is 0-based.