Mercurial > repos > artbio > mircounts
diff mircounts.xml @ 12:6d3e98cba73a draft
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mircounts commit 6718f7c6a0dbb36210f85a65b2e1ae0269855bb5
| author | artbio |
|---|---|
| date | Sat, 12 May 2018 09:06:24 -0400 |
| parents | 7d50d8d0c8c4 |
| children | b045c30fb768 |
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--- a/mircounts.xml Fri May 11 10:52:45 2018 -0400 +++ b/mircounts.xml Sat May 12 09:06:24 2018 -0400 @@ -1,4 +1,4 @@ -<tool id="mircounts" name="miRcounts" version="1.3.1"> +<tool id="mircounts" name="miRcounts" version="1.3.2"> <description> Counts miRNA alignments from small RNA sequence data</description> <requirements> <requirement type="package" version="1.2.0">bowtie</requirement> @@ -136,6 +136,27 @@ <tests> <test> <param name="cutoption" value="yes" /> + <param name="min" value="18"/> + <param name="max" value="32"/> + <param name="Nmode" value="reject"/> + <param name="clip_sequence" value="TGGAATTCTCGGGTGCCAAG"/> + <param name="v" value="1"/> + <param name="genomeKey" value="mmu"/> + <param name="mirbase_version" value="19"/> + <param name="input" value="mouse.fastq" ftype="fastqsanger"/> + <param name="plottingOption" value="yes"/> + <param name="display" value="relative"/> + <param name="output_premir_counts" value="True"/> + <param name="output_mir_counts" value="True"/> + <output name="output" file="mouse.bam"/> + <output name="gff3" file="mouse.19.gff3" lines_diff="22"/> + <output name="pre_mir_count_file" file="mouse_pre_mirs_count.29.tab"/> + <output name="mir_count_file" file="mouse_mirs_count.29.tab"/> + <output name="latticePDF" file="mouse_mir_coverage.pdf"/> + <output name="coverage_dataframe" file="mouse_lattice_dataframe.tab"/> + </test> + <test> + <param name="cutoption" value="yes" /> <param name="min" value="15"/> <param name="max" value="25"/> <param name="Nmode" value="reject"/>