Mercurial > repos > artbio > mircounts

diff test-data/translated_dme.gff3 @ 13:b045c30fb768 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mircounts commit af48e9f6df2717ffd3731a974be1ec36e4eff779"
author artbio
date Fri, 18 Oct 2019 19:18:50 -0400
parents 2a08a6eb471c
children c163574c246f
line wrap: on
line diff
--- a/test-data/translated_dme.gff3	Sat May 12 09:06:24 2018 -0400
+++ b/test-data/translated_dme.gff3	Fri Oct 18 19:18:50 2019 -0400
@@ -10,7 +10,7 @@
 # rather a predicted stem-loop portion that includes the precursor 
 # miRNA. Mature sequences have type "miRNA".
 #
-# generated by mature_mir_gff_translation.py                             2018-04-25 14:39:41.896681
+# generated by mature_mir_gff_translation.py                             2019-10-18 20:33:13.877649
 #
 dme-bantam	.	miRNA_primary_transcript	1	81	.	+	.	ID=MI0000387;Alias=MI0000387;Name=dme-bantam
 dme-bantam-5p	.	miRNA	15	37	.	+	.	ID=MIMAT0020823;Alias=MIMAT0020823;Name=dme-bantam-5p;Derives_from=MI0000387;Parent_mir_Name=dme-bantam
@@ -101,7 +101,6 @@
 dme-miR-13b-3p	.	miRNA	5	26	.	-	.	ID=MIMAT0000119;Alias=MIMAT0000119;Name=dme-miR-13b-3p;Derives_from=MI0000134;Parent_mir_Name=dme-mir-13b-1
 dme-mir-13b-2	.	miRNA_primary_transcript	1	70	.	+	.	ID=MI0000135;Alias=MI0000135;Name=dme-mir-13b-2
 dme-miR-13b-2-5p	.	miRNA	8	31	.	+	.	ID=MIMAT0020797;Alias=MIMAT0020797;Name=dme-miR-13b-2-5p;Derives_from=MI0000135;Parent_mir_Name=dme-mir-13b-2
-dme-miR-13b-3p	.	miRNA	46	67	.	+	.	ID=MIMAT0000119_1;Alias=MIMAT0000119;Name=dme-miR-13b-3p;Derives_from=MI0000135;Parent_mir_Name=dme-mir-13b-2
 dme-mir-14	.	miRNA_primary_transcript	1	63	.	+	.	ID=MI0000136;Alias=MI0000136;Name=dme-mir-14
 dme-miR-14-5p	.	miRNA	4	25	.	+	.	ID=MIMAT0020798;Alias=MIMAT0020798;Name=dme-miR-14-5p;Derives_from=MI0000136;Parent_mir_Name=dme-mir-14
 dme-miR-14-3p	.	miRNA	41	62	.	+	.	ID=MIMAT0000120;Alias=MIMAT0000120;Name=dme-miR-14-3p;Derives_from=MI0000136;Parent_mir_Name=dme-mir-14
@@ -209,7 +208,6 @@
 dme-miR-280-5p	.	miRNA	10	36	.	+	.	ID=MIMAT0000343;Alias=MIMAT0000343;Name=dme-miR-280-5p;Derives_from=MI0000365;Parent_mir_Name=dme-mir-280
 dme-mir-281-1	.	miRNA_primary_transcript	1	90	.	-	.	ID=MI0000366;Alias=MI0000366;Name=dme-mir-281-1
 dme-miR-281-1-5p	.	miRNA	55	77	.	-	.	ID=MIMAT0000344;Alias=MIMAT0000344;Name=dme-miR-281-1-5p;Derives_from=MI0000366;Parent_mir_Name=dme-mir-281-1
-dme-miR-281-3p	.	miRNA	11	33	.	-	.	ID=MIMAT0000345_1;Alias=MIMAT0000345;Name=dme-miR-281-3p;Derives_from=MI0000366;Parent_mir_Name=dme-mir-281-1
 dme-mir-281-2	.	miRNA_primary_transcript	1	92	.	-	.	ID=MI0000370;Alias=MI0000370;Name=dme-mir-281-2
 dme-miR-281-2-5p	.	miRNA	57	78	.	-	.	ID=MIMAT0000349;Alias=MIMAT0000349;Name=dme-miR-281-2-5p;Derives_from=MI0000370;Parent_mir_Name=dme-mir-281-2
 dme-miR-281-3p	.	miRNA	11	33	.	-	.	ID=MIMAT0000345;Alias=MIMAT0000345;Name=dme-miR-281-3p;Derives_from=MI0000370;Parent_mir_Name=dme-mir-281-2
@@ -236,7 +234,6 @@
 dme-miR-289-5p	.	miRNA	16	41	.	+	.	ID=MIMAT0000364;Alias=MIMAT0000364;Name=dme-miR-289-5p;Derives_from=MI0000385;Parent_mir_Name=dme-mir-289
 dme-mir-2a-1	.	miRNA_primary_transcript	1	76	.	-	.	ID=MI0000117;Alias=MI0000117;Name=dme-mir-2a-1
 dme-miR-2a-1-5p	.	miRNA	49	70	.	-	.	ID=MIMAT0020780;Alias=MIMAT0020780;Name=dme-miR-2a-1-5p;Derives_from=MI0000117;Parent_mir_Name=dme-mir-2a-1
-dme-miR-2a-3p	.	miRNA	6	28	.	-	.	ID=MIMAT0000106_1;Alias=MIMAT0000106;Name=dme-miR-2a-3p;Derives_from=MI0000117;Parent_mir_Name=dme-mir-2a-1
 dme-mir-2a-2	.	miRNA_primary_transcript	1	72	.	-	.	ID=MI0000118;Alias=MI0000118;Name=dme-mir-2a-2
 dme-miR-2a-2-5p	.	miRNA	45	65	.	-	.	ID=MIMAT0020781;Alias=MIMAT0020781;Name=dme-miR-2a-2-5p;Derives_from=MI0000118;Parent_mir_Name=dme-mir-2a-2
 dme-miR-2a-3p	.	miRNA	7	29	.	-	.	ID=MIMAT0000106;Alias=MIMAT0000106;Name=dme-miR-2a-3p;Derives_from=MI0000118;Parent_mir_Name=dme-mir-2a-2
@@ -245,7 +242,6 @@
 dme-miR-2b-3p	.	miRNA	8	30	.	-	.	ID=MIMAT0000107;Alias=MIMAT0000107;Name=dme-miR-2b-3p;Derives_from=MI0000119;Parent_mir_Name=dme-mir-2b-1
 dme-mir-2b-2	.	miRNA_primary_transcript	1	83	.	-	.	ID=MI0000120;Alias=MI0000120;Name=dme-mir-2b-2
 dme-miR-2b-2-5p	.	miRNA	53	75	.	-	.	ID=MIMAT0020783;Alias=MIMAT0020783;Name=dme-miR-2b-2-5p;Derives_from=MI0000120;Parent_mir_Name=dme-mir-2b-2
-dme-miR-2b-3p	.	miRNA	8	30	.	-	.	ID=MIMAT0000107_1;Alias=MIMAT0000107;Name=dme-miR-2b-3p;Derives_from=MI0000120;Parent_mir_Name=dme-mir-2b-2
 dme-mir-2c	.	miRNA_primary_transcript	1	102	.	-	.	ID=MI0000431;Alias=MI0000431;Name=dme-mir-2c
 dme-miR-2c-5p	.	miRNA	59	83	.	-	.	ID=MIMAT0020845;Alias=MIMAT0020845;Name=dme-miR-2c-5p;Derives_from=MI0000431;Parent_mir_Name=dme-mir-2c
 dme-miR-2c-3p	.	miRNA	18	40	.	-	.	ID=MIMAT0000411;Alias=MIMAT0000411;Name=dme-miR-2c-3p;Derives_from=MI0000431;Parent_mir_Name=dme-mir-2c
@@ -498,10 +494,8 @@
 dme-miR-5-3p	.	miRNA	5	27	.	-	.	ID=MIMAT0020786;Alias=MIMAT0020786;Name=dme-miR-5-3p;Derives_from=MI0000123;Parent_mir_Name=dme-mir-5
 dme-mir-6-1	.	miRNA_primary_transcript	1	82	.	-	.	ID=MI0000124;Alias=MI0000124;Name=dme-mir-6-1
 dme-miR-6-1-5p	.	miRNA	51	72	.	-	.	ID=MIMAT0020787;Alias=MIMAT0020787;Name=dme-miR-6-1-5p;Derives_from=MI0000124;Parent_mir_Name=dme-mir-6-1
-dme-miR-6-3p	.	miRNA	10	31	.	-	.	ID=MIMAT0000111_2;Alias=MIMAT0000111;Name=dme-miR-6-3p;Derives_from=MI0000124;Parent_mir_Name=dme-mir-6-1
 dme-mir-6-2	.	miRNA_primary_transcript	1	74	.	-	.	ID=MI0000125;Alias=MI0000125;Name=dme-mir-6-2
 dme-miR-6-2-5p	.	miRNA	45	67	.	-	.	ID=MIMAT0020788;Alias=MIMAT0020788;Name=dme-miR-6-2-5p;Derives_from=MI0000125;Parent_mir_Name=dme-mir-6-2
-dme-miR-6-3p	.	miRNA	6	27	.	-	.	ID=MIMAT0000111_1;Alias=MIMAT0000111;Name=dme-miR-6-3p;Derives_from=MI0000125;Parent_mir_Name=dme-mir-6-2
 dme-mir-6-3	.	miRNA_primary_transcript	1	80	.	-	.	ID=MI0000126;Alias=MI0000126;Name=dme-mir-6-3
 dme-miR-6-3-5p	.	miRNA	50	72	.	-	.	ID=MIMAT0020789;Alias=MIMAT0020789;Name=dme-miR-6-3-5p;Derives_from=MI0000126;Parent_mir_Name=dme-mir-6-3
 dme-miR-6-3p	.	miRNA	7	28	.	-	.	ID=MIMAT0000111;Alias=MIMAT0000111;Name=dme-miR-6-3p;Derives_from=MI0000126;Parent_mir_Name=dme-mir-6-3
@@ -677,8 +671,6 @@
 dme-miR-983-5p	.	miRNA	53	74	.	-	.	ID=MIMAT0005499;Alias=MIMAT0005499;Name=dme-miR-983-5p;Derives_from=MI0005840;Parent_mir_Name=dme-mir-983-1
 dme-miR-983-3p	.	miRNA	17	38	.	-	.	ID=MIMAT0020880;Alias=MIMAT0020880;Name=dme-miR-983-3p;Derives_from=MI0005840;Parent_mir_Name=dme-mir-983-1
 dme-mir-983-2	.	miRNA_primary_transcript	1	99	.	-	.	ID=MI0005841;Alias=MI0005841;Name=dme-mir-983-2
-dme-miR-983-5p	.	miRNA	58	79	.	-	.	ID=MIMAT0005499_1;Alias=MIMAT0005499;Name=dme-miR-983-5p;Derives_from=MI0005841;Parent_mir_Name=dme-mir-983-2
-dme-miR-983-3p	.	miRNA	22	43	.	-	.	ID=MIMAT0020880_1;Alias=MIMAT0020880;Name=dme-miR-983-3p;Derives_from=MI0005841;Parent_mir_Name=dme-mir-983-2
 dme-mir-984	.	miRNA_primary_transcript	1	90	.	-	.	ID=MI0005842;Alias=MI0005842;Name=dme-mir-984
 dme-miR-984-5p	.	miRNA	53	75	.	-	.	ID=MIMAT0005500;Alias=MIMAT0005500;Name=dme-miR-984-5p;Derives_from=MI0005842;Parent_mir_Name=dme-mir-984
 dme-miR-984-3p	.	miRNA	17	36	.	-	.	ID=MIMAT0020881;Alias=MIMAT0020881;Name=dme-miR-984-3p;Derives_from=MI0005842;Parent_mir_Name=dme-mir-984