Mercurial > repos > artbio > mutational_patterns

annotate test-data/H.vcf @ 17:8c6ee1c2248f draft

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"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit e5d498dfc5a6a9aaea3d09037dea5d15c2d85dd2"
author artbio
date Tue, 05 Oct 2021 22:28:34 +0000
parents aea952be68cb
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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1 ##fileformat=VCFv4.2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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2 ##FILTER=<ID=PASS,Description="All filters passed">
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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3 ##reference=hg38
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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4 ##source=varscan.py
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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5 ##contig=<ID=chr1,length=248956422>
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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6 ##contig=<ID=chr10,length=133797422>
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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7 ##contig=<ID=chr11,length=135086622>
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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8 ##contig=<ID=chr12,length=133275309>
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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9 ##contig=<ID=chr13,length=114364328>
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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10 ##contig=<ID=chr14,length=107043718>
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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11 ##contig=<ID=chr15,length=101991189>
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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12 ##contig=<ID=chr16,length=90338345>
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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13 ##contig=<ID=chr17,length=83257441>
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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14 ##contig=<ID=chr18,length=80373285>
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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15 ##contig=<ID=chr19,length=58617616>
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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16 ##contig=<ID=chr2,length=242193529>
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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17 ##contig=<ID=chr20,length=64444167>
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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18 ##contig=<ID=chr21,length=46709983>
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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19 ##contig=<ID=chr22,length=50818468>
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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20 ##contig=<ID=chr3,length=198295559>
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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21 ##contig=<ID=chr4,length=190214555>
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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22 ##contig=<ID=chr5,length=181538259>
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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23 ##contig=<ID=chr6,length=170805979>
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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24 ##contig=<ID=chr7,length=159345973>
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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25 ##contig=<ID=chr8,length=145138636>
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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26 ##contig=<ID=chr9,length=138394717>
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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27 ##contig=<ID=chrM,length=16569>
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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28 ##contig=<ID=chrX,length=156040895>
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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29 ##contig=<ID=chrY,length=57227415>
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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30 ##filter="SOMATIC"
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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31 ##INFO=<ID=INDEL,Number=0,Type=Flag,Description="Indicates that the variant is an INDEL">
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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32 ##INFO=<ID=DP,Number=1,Type=Integer,Description="Total depth of quality bases">
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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33 ##INFO=<ID=SOMATIC,Number=0,Type=Flag,Description="Indicates if record is a somatic mutation">
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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34 ##INFO=<ID=SS,Number=1,Type=String,Description="Somatic status of variant (0=Reference,1=Germline,2=Somatic,3=LOH, or 5=Unknown)">
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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35 ##INFO=<ID=SSC,Number=1,Type=String,Description="Somatic score in Phred scale (0-255) derived from somatic p-value">
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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36 ##INFO=<ID=GPV,Number=1,Type=Float,Description="Fisher's Exact Test P-value of tumor+normal versus no variant for Germline calls">
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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37 ##INFO=<ID=SPV,Number=1,Type=Float,Description="Fisher's Exact Test P-value of tumor versus normal for Somatic/LOH calls">
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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38 ##FILTER=<ID=str10,Description="Less than 10% or more than 90% of variant supporting reads on one strand">
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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39 ##FILTER=<ID=indelError,Description="Likely artifact due to indel reads at this position">
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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40 ##FILTER=<ID=VarCount,Description="Fewer than 4 variant-supporting reads">
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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41 ##FILTER=<ID=VarFreq,Description="Variant allele frequency below 0.05">
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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42 ##FILTER=<ID=VarAvgRL,Description="Average clipped length of variant-supporting reads < 90">
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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43 ##FILTER=<ID=VarReadPos,Description="Relative average read position < 0.1">
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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44 ##FILTER=<ID=VarDist3,Description="Average distance to effective 3' end < 0.1">
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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45 ##FILTER=<ID=VarMMQS,Description="Average mismatch quality sum for variant reads > 100">
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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46 ##FILTER=<ID=VarMapQual,Description="Average mapping quality of variant reads < 15">
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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47 ##FILTER=<ID=VarBaseQual,Description="Average base quality of variant reads < 15">
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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48 ##FILTER=<ID=Strand,Description="Strand representation of variant reads < 0.01">
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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49 ##FILTER=<ID=RefAvgRL,Description="Average clipped length of ref-supporting reads < 90">
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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50 ##FILTER=<ID=RefReadPos,Description="Relative average read position < 0.1">
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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51 ##FILTER=<ID=RefDist3,Description="Average distance to effective 3' end < 0.1">
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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52 ##FILTER=<ID=RefMapQual,Description="Average mapping quality of reference reads < 15">
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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53 ##FILTER=<ID=RefBaseQual,Description="Average base quality of ref-supporting reads < 15">
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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54 ##FILTER=<ID=RefMMQS,Description="Average mismatch quality sum for ref-supporting reads > 100">
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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55 ##FILTER=<ID=MMQSdiff,Description="Mismatch quality sum difference (var - ref) > 50">
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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56 ##FILTER=<ID=MinMMQSdiff,Description="Mismatch quality sum difference (var - ref) < 50">
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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57 ##FILTER=<ID=MapQualDiff,Description="Mapping quality difference (ref - var) > 50">
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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58 ##FILTER=<ID=MaxBAQdiff,Description="Average base quality difference (ref - var) > 50">
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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59 ##FILTER=<ID=ReadLenDiff,Description="Average supporting read length difference (ref - var) > 0.25">
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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60 ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype code">
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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61 ##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype quality">
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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62 ##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read depth">
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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63 ##FORMAT=<ID=AD,Number=R,Type=Integer,Description="Read depth for each allele">
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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64 ##FORMAT=<ID=ADF,Number=R,Type=Integer,Description="Read depth for each allele on the forward strand">
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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65 ##FORMAT=<ID=ADR,Number=R,Type=Integer,Description="Read depth for each allele on the reverse strand">
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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66 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT TUMOR
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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67 chr1 101393 . T C 0 PASS DP=63;GPV=1;SPV=0.044769;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:30,9:25,2:5,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
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68 chr1 131552 . G T 0 PASS DP=20;GPV=1;SPV=0.10217;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:3,3:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
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69 chr1 181481 . A AG 0 PASS DP=86;GPV=1;SPV=0.0027902;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:20,15:13,12:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
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70 chr1 202670 . C G 0 PASS DP=17;GPV=1;SPV=0.20588;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:0,0:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
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71 chr1 288242 . G C 0 PASS DP=24;GPV=1;SPV=0.018307;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,6:3,4:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
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72 chr1 992992 . GA G 0 PASS DP=44;GPV=1;SPV=0.17876;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,4:6,2:12,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
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73 chr1 992995 . G C 0 PASS DP=43;GPV=1;SPV=0.12114;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:7,2:15,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
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74 chr1 993003 . A C 0 PASS DP=43;GPV=1;SPV=0.1025;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:7,2:14,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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parents:
diff changeset
75 chr1 993004 . T C 0 PASS DP=41;GPV=1;SPV=0.08744;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:7,2:12,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
76 chr1 1124108 . CACACACCTGCGCACACCACTGCAT C 0 PASS DP=36;GPV=1;SPV=0.035545;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,8:7,7:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
77 chr1 1146234 . C T 0 PASS DP=70;GPV=1;SPV=1.9644e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:22,14:10,8:12,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
78 chr1 1351361 . G C 0 PASS DP=17;GPV=1;SPV=0.12353;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:6,3:6,3:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
79 chr1 1641642 . T C 0 PASS DP=35;GPV=1;SPV=0.20263;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:13,1:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
80 chr1 1985120 . A T 0 PASS DP=70;GPV=1;SPV=0.00046276;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:25,10:6,5:19,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
81 chr1 2617426 . C CA 0 PASS DP=27;GPV=1;SPV=0.055341;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:8,7:3,6:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
82 chr1 2671975 . G A 0 PASS DP=321;GPV=1;SPV=0.026206;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:168:148,20:69,10:79,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
83 chr1 2696836 . C G 0 PASS DP=32;GPV=1;SPV=0.0094843;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:9,11:8,5:1,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
84 chr1 2845230 . A AACAAAAC 0 PASS DP=35;GPV=1;SPV=0.0016992;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:8,9:4,5:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
85 chr1 3223178 . T C 0 PASS DP=41;GPV=1;SPV=0.00072552;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:10,18:6,7:4,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
86 chr1 3868659 . GCCACA G 0 PASS DP=34;GPV=1;SPV=0.015632;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,7:7,4:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
87 chr1 4398515 . C CGTGTGTGTGT 0 PASS DP=43;GPV=1;SPV=0.019548;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:10,7:6,4:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
88 chr1 5631298 . C CAAAA 0 PASS DP=43;GPV=1;SPV=0.042767;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:19,7:10,6:9,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
89 chr1 6275712 . G C 0 PASS DP=41;GPV=1;SPV=0.015395;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,7:15,4:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
90 chr1 6570444 . C CA 0 PASS DP=41;GPV=1;SPV=0.02776;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,10:16,7:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
91 chr1 7139230 . ATATATATT A 0 PASS DP=65;GPV=1;SPV=0.071412;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:33,5:18,3:15,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
92 chr1 7492741 . A ACGTG 0 PASS DP=41;GPV=1;SPV=0.044075;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,7:8,4:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
93 chr1 8121082 . GTGGCATGAACACTGATTT G 0 PASS DP=61;GPV=1;SPV=0.00018017;SS=2;SSC=37;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,9:8,4:9,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
94 chr1 8239060 . CTT C 0 PASS DP=23;GPV=1;SPV=0.10217;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,4:6,2:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
95 chr1 8601626 . C CCACA 0 PASS DP=41;GPV=1;SPV=0.014142;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:5,6:4,4:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
96 chr1 8861880 . T TA 0 PASS DP=52;GPV=1;SPV=0.038543;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:23,13:13,6:10,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
97 chr1 8901204 . T TTTTTA 0 PASS DP=44;GPV=1;SPV=0.093185;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:7,1:14,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
98 chr1 9099655 . G GGCCAGTGCAGATCTGCAAGTCAC 0 PASS DP=41;GPV=1;SPV=0.14763;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:11,2:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
99 chr1 9379767 . GGAAAGAAAGAAAGAAAGAAAGAAA G 0 PASS DP=35;GPV=1;SPV=0.15775;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,5:12,2:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
100 chr1 9634149 . G T 0 PASS DP=35;GPV=1;SPV=0.13684;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:10,4:8,3:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
101 chr1 10199513 . A AG 0 PASS DP=36;GPV=1;SPV=0.10365;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,5:7,4:11,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
102 chr1 10228364 . A T 0 PASS DP=75;GPV=1;SPV=0.17909;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:19,5:10,3:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
103 chr1 10235862 . CA C 0 PASS DP=34;GPV=1;SPV=0.03989;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:4,8:0,7:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
104 chr1 10918938 . ATTT A 0 PASS DP=35;GPV=1;SPV=0.015103;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:6,12:5,7:1,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
105 chr1 10987386 . A AAGAAAGAAAG 0 PASS DP=57;GPV=1;SPV=0.0056131;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,10:11,8:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
106 chr1 11854533 . G A 0 PASS DP=39;GPV=1;SPV=0.18447;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:9,4:3,2:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
107 chr1 12174172 . C T 0 PASS DP=51;GPV=1;SPV=0.064803;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:26,6:7,1:19,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
108 chr1 12888972 . A T 0 PASS DP=25;GPV=1;SPV=0.033948;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,9:2,1:5,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
109 chr1 13149557 . G A 0 PASS DP=19;GPV=1;SPV=0.085139;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:7,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
110 chr1 13169757 . C T 0 PASS DP=38;GPV=1;SPV=0.14395;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:12,3:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
111 chr1 13701438 . A C 0 PASS DP=56;GPV=1;SPV=3.4807e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:17,15:10,9:7,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
112 chr1 14133379 . AAG A 0 PASS DP=29;GPV=1;SPV=0.22807;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,4:5,2:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
113 chr1 14348051 . A ATTT 0 PASS DP=31;GPV=1;SPV=0.0052174;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:6,13:2,9:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
114 chr1 15580201 . C CTT 0 PASS DP=30;GPV=1;SPV=0.020843;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:8,4:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
115 chr1 15595170 . T C 0 PASS DP=56;GPV=1;SPV=0.044481;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:26,5:16,1:10,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
116 chr1 15971476 . A C 0 PASS DP=55;GPV=1;SPV=0.087731;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,4:13,1:12,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
117 chr1 16426583 . T A 0 PASS DP=48;GPV=1;SPV=0.090194;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:10,2:13,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
118 chr1 16509814 . G T 0 PASS DP=223;GPV=1;SPV=0.0081452;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:118:100,18:26,8:74,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
119 chr1 16547745 . G A 0 PASS DP=47;GPV=1;SPV=0.0026193;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:6,3:6,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
120 chr1 16606288 . G C 0 PASS DP=311;GPV=1;SPV=0.0016457;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:175:141,34:81,12:60,22
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
121 chr1 16622717 . C T 0 PASS DP=308;GPV=1;SPV=0.012902;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:177:153,24:73,16:80,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
122 chr1 16624955 . A AAG 0 PASS DP=171;GPV=1;SPV=0.011056;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:93:75,14:33,5:42,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
123 chr1 16633203 . G A 0 PASS DP=359;GPV=1;SPV=0.017651;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:210:182,28:101,17:81,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
124 chr1 16634406 . TGTGTGTGTGTGC T 0 PASS DP=213;GPV=1;SPV=0.011244;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:114:102,12:49,4:53,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
125 chr1 16644389 . T C 0 PASS DP=389;GPV=1;SPV=0.02049;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:221:195,26:127,14:68,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
126 chr1 16650688 . C T 0 PASS DP=271;GPV=1;SPV=0.014354;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:151:127,24:65,12:62,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
127 chr1 16681062 . T C 0 PASS DP=152;GPV=1;SPV=0.040038;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:89:78,11:45,5:33,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
128 chr1 16694826 . G A 0 PASS DP=222;GPV=1;SPV=0.022123;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:124:103,21:46,11:57,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
129 chr1 16698874 . T G 0 PASS DP=250;GPV=1;SPV=0.0018208;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:140:107,33:53,15:54,18
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
130 chr1 16699684 . C G 0 PASS DP=280;GPV=1;SPV=0.046587;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:155:133,22:75,16:58,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
131 chr1 16701595 . C T 0 PASS DP=272;GPV=1;SPV=0.049711;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:143:119,24:50,12:69,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
132 chr1 16709200 . C T 0 PASS DP=251;GPV=1;SPV=0.00279;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:145:113,32:61,17:52,15
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
133 chr1 16709246 . C T 0 PASS DP=240;GPV=1;SPV=0.039109;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:135:117,18:69,11:48,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
134 chr1 16714068 . A G 0 PASS DP=264;GPV=1;SPV=0.047562;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:153:129,24:68,9:61,15
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
135 chr1 16716376 . C T 0 PASS DP=80;GPV=1;SPV=0.030879;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:34,10:18,3:16,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
136 chr1 16752059 . T C 0 PASS DP=42;GPV=1;SPV=0.11302;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:20,4:1,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
137 chr1 16760970 . G A 0 PASS DP=291;GPV=1;SPV=0.041885;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:150:129,21:72,9:57,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
138 chr1 16874735 . CA C 0 PASS DP=135;GPV=1;SPV=0.013765;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:80:69,11:33,7:36,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
139 chr1 16874979 . C T 0 PASS DP=393;GPV=1;SPV=0.040233;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:209:185,24:117,16:68,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
140 chr1 17134599 . G GCACACA 0 PASS DP=56;GPV=1;SPV=0.043639;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:27,11:9,5:18,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
141 chr1 17359299 . G A 0 PASS DP=66;GPV=1;SPV=1.0564e-06;SS=2;SSC=59;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:13,12:4,3:9,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
142 chr1 18304726 . C T 0 PASS DP=60;GPV=1;SPV=0.075302;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:31,5:14,3:17,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
143 chr1 19132605 . T TAAAAAAA 0 PASS DP=34;GPV=1;SPV=0.14178;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:11,4:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
144 chr1 19528188 . A G 0 PASS DP=19;GPV=1;SPV=0.017385;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:3,6:2,5:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
145 chr1 19653115 . G A 0 PASS DP=58;GPV=1;SPV=4.9593e-06;SS=2;SSC=53;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:11,24:9,17:2,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
146 chr1 20815669 . G A 0 PASS DP=45;GPV=1;SPV=0.11664;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,5:6,1:19,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
147 chr1 20831279 . T A 0 PASS DP=63;GPV=1;SPV=0.016096;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:27,10:15,4:12,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
148 chr1 21406937 . T C 0 PASS DP=48;GPV=1;SPV=0.2103;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:14,2:15,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
149 chr1 22336661 . C T 0 PASS DP=36;GPV=1;SPV=0.0038123;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:10,2:1,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
150 chr1 22790608 . C A 0 PASS DP=67;GPV=1;SPV=0.00074026;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:25,10:10,7:15,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
151 chr1 23256758 . C T 0 PASS DP=59;GPV=1;SPV=0.020884;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:16,9:5,2:11,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
152 chr1 23392474 . A AATAC 0 PASS DP=28;GPV=1;SPV=0.13725;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:5,2:5,1:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
153 chr1 23392494 . C T 0 PASS DP=19;GPV=1;SPV=0.057792;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:5,3:5,1:0,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
154 chr1 23484632 . C T 0 PASS DP=31;GPV=1;SPV=0.025986;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:10,10:2,3:8,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
155 chr1 24975159 . A AGACGGAAGGAAGGAAG 0 PASS DP=30;GPV=1;SPV=0.015632;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:7,5:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
156 chr1 26552386 . CA C 0 PASS DP=21;GPV=1;SPV=0.017028;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,6:3,5:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
157 chr1 27167737 . TC T 0 PASS DP=69;GPV=1;SPV=0.095143;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:22,1:13,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
158 chr1 29493274 . T A 0 PASS DP=68;GPV=1;SPV=0.00013472;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:27,18:13,9:14,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
159 chr1 30780180 . C CTT 0 PASS DP=30;GPV=1;SPV=0.049017;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,6:4,4:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
160 chr1 31252104 . C T 0 PASS DP=59;GPV=1;SPV=0.031089;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:24,5:13,1:11,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
161 chr1 31252107 . A ACAAT 0 PASS DP=61;GPV=1;SPV=0.074163;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:27,4:15,1:12,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
162 chr1 31270360 . C A 0 PASS DP=61;GPV=1;SPV=0.00071539;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:22,10:13,4:9,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
163 chr1 31894583 . C CA 0 PASS DP=41;GPV=1;SPV=0.015475;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,9:9,6:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
164 chr1 32094117 . C CT 0 PASS DP=26;GPV=1;SPV=0.047101;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,5:5,4:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
165 chr1 33598665 . GT G 0 PASS DP=37;GPV=1;SPV=0.043842;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:10,4:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
166 chr1 33679199 . GT G 0 PASS DP=29;GPV=1;SPV=0.0022121;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:5,13:2,11:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
167 chr1 33923868 . C T 0 PASS DP=63;GPV=1;SPV=0.0019889;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:26,10:10,6:16,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
168 chr1 35800326 . C T 0 PASS DP=50;GPV=1;SPV=0.13316;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:25,4:11,3:14,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
169 chr1 36158141 . CA C 0 PASS DP=53;GPV=1;SPV=0.028132;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:15,1:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
170 chr1 36403222 . TTA T 0 PASS DP=27;GPV=1;SPV=0.16667;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:2,2:1,1:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
171 chr1 36546905 . GAAAAAGAA G 0 PASS DP=41;GPV=1;SPV=0.28552;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,4:18,3:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
172 chr1 37772399 . A AAT 0 PASS DP=29;GPV=1;SPV=0.00061022;SS=2;SSC=32;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:6,10:2,6:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
173 chr1 37963872 . T TAA 0 PASS DP=24;GPV=1;SPV=0.040724;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,5:1,2:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
174 chr1 39530887 . CA C 0 PASS DP=36;GPV=1;SPV=0.0016908;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:11,13:10,12:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
175 chr1 40393541 . CT C 0 PASS DP=31;GPV=1;SPV=0.055341;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:8,6:7,4:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
176 chr1 40557103 . A G 0 PASS DP=22;GPV=1;SPV=0.097744;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:9,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
177 chr1 41438047 . T TA 0 PASS DP=29;GPV=1;SPV=0.0011293;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:5,11:1,9:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
178 chr1 42183978 . C G 0 PASS DP=66;GPV=1;SPV=0.00045819;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:18,18:7,7:11,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
179 chr1 42214496 . C A 0 PASS DP=55;GPV=1;SPV=0.038206;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:27,6:17,2:10,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
180 chr1 42864327 . C CA 0 PASS DP=26;GPV=1;SPV=0.14387;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:11,4:1,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
181 chr1 43112481 . TTTTTTTTG T 0 PASS DP=29;GPV=1;SPV=0.009224;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,9:6,6:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
182 chr1 43744652 . C CAATAAATAAATAAATAAATA 0 PASS DP=46;GPV=1;SPV=0.31126;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:30,4:20,1:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
183 chr1 44259924 . C T 0 PASS DP=59;GPV=1;SPV=0.10026;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:33,5:18,4:15,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
184 chr1 45223857 . T A 0 PASS DP=52;GPV=1;SPV=0.11622;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:19,1:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
185 chr1 46177374 . T A 0 PASS DP=62;GPV=1;SPV=0.036704;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:10,1:14,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
186 chr1 46855143 . G T 0 PASS DP=74;GPV=1;SPV=0.045774;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:35,8:18,5:17,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
187 chr1 53037879 . TAC T 0 PASS DP=38;GPV=1;SPV=0.034438;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,8:10,5:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
188 chr1 53136668 . T A 0 PASS DP=39;GPV=1;SPV=0.32536;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:13,5:5,3:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
189 chr1 53592384 . T A 0 PASS DP=75;GPV=1;SPV=0.022863;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:38,7:19,1:19,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
190 chr1 54165021 . A C 0 PASS DP=55;GPV=1;SPV=0.12238;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:4,3:2,2:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
191 chr1 54382985 . C CA 0 PASS DP=43;GPV=1;SPV=0.087777;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,5:12,4:9,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
192 chr1 54411478 . G GA 0 PASS DP=40;GPV=1;SPV=0.0081016;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:11,12:3,7:8,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
193 chr1 54663700 . A C 0 PASS DP=61;GPV=1;SPV=0.10033;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:13,2:18,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
194 chr1 54691803 . A AGTGT 0 PASS DP=25;GPV=1;SPV=0.0027765;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,8:1,2:5,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
195 chr1 54819812 . TTTTC T 0 PASS DP=30;GPV=1;SPV=0.066667;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,4:0,0:11,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
196 chr1 55480421 . T G 0 PASS DP=76;GPV=1;SPV=9.0495e-07;SS=2;SSC=60;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:22,18:7,9:15,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
197 chr1 55910573 . ATAAGATGCATGTATT A 0 PASS DP=61;GPV=1;SPV=0.0013988;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:27,15:17,8:10,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
198 chr1 56347475 . T C 0 PASS DP=54;GPV=1;SPV=0.0026904;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:21,9:10,5:11,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
199 chr1 58266064 . G C 0 PASS DP=54;GPV=1;SPV=0.0066857;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,7:8,2:13,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
200 chr1 58323924 . C CA 0 PASS DP=38;GPV=1;SPV=0.0075295;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,7:10,6:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
201 chr1 60409766 . C T 0 PASS DP=36;GPV=1;SPV=0.17449;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:8,1:13,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
202 chr1 60637754 . A AGAT 0 PASS DP=54;GPV=1;SPV=0.10815;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:30,6:17,4:13,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
203 chr1 61059586 . G GT 0 PASS DP=37;GPV=1;SPV=0.011765;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:11,12:5,9:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
204 chr1 61432644 . C CACAT 0 PASS DP=43;GPV=1;SPV=0.14221;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:14,1:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
205 chr1 61432652 . T C 0 PASS DP=40;GPV=1;SPV=0.096892;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:13,1:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
206 chr1 63402460 . A AT 0 PASS DP=24;GPV=1;SPV=0.022311;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,6:7,5:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
207 chr1 64239080 . G GGAA 0 PASS DP=23;GPV=1;SPV=0.038248;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:7,1:1,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
208 chr1 64268661 . C CAAA 0 PASS DP=48;GPV=1;SPV=0.018299;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:22,9:9,5:13,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
209 chr1 65571808 . A T 0 PASS DP=34;GPV=1;SPV=0.10447;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:14,2:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
210 chr1 67014670 . G GT 0 PASS DP=35;GPV=1;SPV=0.033948;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:7,8:3,7:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
211 chr1 67252804 . C CA 0 PASS DP=46;GPV=1;SPV=0.037022;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,8:10,7:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
212 chr1 68745664 . C CTT 0 PASS DP=30;GPV=1;SPV=0.029563;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:6,6:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
213 chr1 69094454 . C CTTTTTTTTTTT 0 PASS DP=51;GPV=1;SPV=0.01018;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:18,11:7,8:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
214 chr1 69942897 . G T 0 PASS DP=66;GPV=1;SPV=0.0040177;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:30,10:15,5:15,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
215 chr1 73575232 . A T 0 PASS DP=59;GPV=1;SPV=0.0026395;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:22,8:14,6:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
216 chr1 75266318 . T TACACACACAC 0 PASS DP=52;GPV=1;SPV=0.02769;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:8,3:9,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
217 chr1 75773098 . C A 0 PASS DP=59;GPV=1;SPV=1.5927e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:14,11:10,6:4,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
218 chr1 75836453 . C A 0 PASS DP=68;GPV=1;SPV=0.0005577;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:26,11:13,5:13,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
219 chr1 78797746 . C CT 0 PASS DP=52;GPV=1;SPV=0.014047;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:18,13:14,9:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
220 chr1 79104840 . C T 0 PASS DP=62;GPV=1;SPV=0.088975;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:34,5:15,1:19,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
221 chr1 79281755 . T C 0 PASS DP=80;GPV=1;SPV=4.0494e-06;SS=2;SSC=53;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:23,14:10,8:13,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
222 chr1 79784600 . C CTTT 0 PASS DP=21;GPV=1;SPV=0.20979;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,4:2,3:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
223 chr1 80496447 . CA C 0 PASS DP=70;GPV=1;SPV=0.04376;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:36,6:20,3:16,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
224 chr1 81777283 . T C 0 PASS DP=69;GPV=1;SPV=0.085385;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:34,4:16,2:18,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
225 chr1 82736650 . T C 0 PASS DP=31;GPV=1;SPV=0.047826;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:8,12:2,4:6,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
226 chr1 83390878 . A G 0 PASS DP=73;GPV=1;SPV=0.045034;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:32,10:16,2:16,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
227 chr1 84993619 . CTTT C 0 PASS DP=26;GPV=1;SPV=0.07913;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:8,2:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
228 chr1 84993787 . C A 0 PASS DP=67;GPV=1;SPV=0.11923;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:36,4:16,3:20,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
229 chr1 84993795 . T C 0 PASS DP=63;GPV=1;SPV=0.093615;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:35,5:13,3:22,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
230 chr1 86216519 . G T 0 PASS DP=33;GPV=1;SPV=0.10779;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,4:9,3:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
231 chr1 86445356 . C CTTT 0 PASS DP=29;GPV=1;SPV=0.029349;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:5,4:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
232 chr1 87832685 . ATGTGTG A 0 PASS DP=24;GPV=1;SPV=0.11538;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,4:3,3:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
233 chr1 89312748 . C A 0 PASS DP=74;GPV=1;SPV=0.00013643;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:24,15:14,6:10,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
234 chr1 89379349 . G T 0 PASS DP=78;GPV=1;SPV=0.033333;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:40:1,3:1,2:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
235 chr1 89450419 . A G 0 PASS DP=64;GPV=1;SPV=0.084757;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:28,4:10,2:18,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
236 chr1 90643880 . T TTCTTTC 0 PASS DP=42;GPV=1;SPV=0.065833;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,6:11,2:10,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
237 chr1 91212539 . T G 0 PASS DP=28;GPV=1;SPV=0.088889;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:5,2:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
238 chr1 91991991 . CA C 0 PASS DP=31;GPV=1;SPV=0.011166;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:8,12:7,11:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
239 chr1 92395635 . CAA C 0 PASS DP=35;GPV=1;SPV=0.034783;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:10,10:4,7:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
240 chr1 93381633 . A T 0 PASS DP=56;GPV=1;SPV=0.076628;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:12,4:4,2:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
241 chr1 93753543 . TACAC T 0 PASS DP=41;GPV=1;SPV=0.037681;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:7,10:4,6:3,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
242 chr1 93920959 . T A 0 PASS DP=63;GPV=1;SPV=0.18182;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:3,2:3,1:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
243 chr1 94538288 . G A 0 PASS DP=63;GPV=1;SPV=8.7596e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:23,17:12,11:11,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
244 chr1 95033400 . TAC T 0 PASS DP=53;GPV=1;SPV=0.13974;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:17,1:12,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
245 chr1 95569922 . CTTTT C 0 PASS DP=28;GPV=1;SPV=0.12174;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,4:8,2:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
246 chr1 95942371 . T A 0 PASS DP=35;GPV=1;SPV=0.038747;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:13,12:5,8:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
247 chr1 96265847 . T TAA 0 PASS DP=75;GPV=1;SPV=0.015722;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:32,9:17,4:15,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
248 chr1 96265872 . T TAA 0 PASS DP=63;GPV=1;SPV=0.048018;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:33,6:15,3:18,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
249 chr1 96265897 . T TA 0 PASS DP=57;GPV=1;SPV=0.1672;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:15,1:18,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
250 chr1 98202738 . C G 0 PASS DP=52;GPV=1;SPV=0.03094;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:17,6:8,3:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
251 chr1 98219836 . G GTCTA 0 PASS DP=50;GPV=1;SPV=0.00021044;SS=2;SSC=36;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:10,11:9,6:1,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
252 chr1 98277222 . T C 0 PASS DP=64;GPV=1;SPV=8.6637e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,10:10,6:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
253 chr1 99087969 . A G 0 PASS DP=43;GPV=1;SPV=0.055194;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:13,2:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
254 chr1 99088005 . GGAAGGAAA G 0 PASS DP=47;GPV=1;SPV=0.083817;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:11,2:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
255 chr1 100757864 . G GTTTT 0 PASS DP=30;GPV=1;SPV=0.16587;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,5:5,4:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
256 chr1 101132132 . CATAT C 0 PASS DP=57;GPV=1;SPV=0.079112;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:19,4:10,2:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
257 chr1 101242014 . T G 0 PASS DP=56;GPV=1;SPV=0.097906;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:16,3:12,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
258 chr1 101629378 . G A 0 PASS DP=41;GPV=1;SPV=0.017056;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:2,4:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
259 chr1 102336800 . A T 0 PASS DP=62;GPV=1;SPV=0.0071577;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:18,10:8,3:10,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
260 chr1 102336801 . T A 0 PASS DP=63;GPV=1;SPV=0.0027895;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,10:9,3:11,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
261 chr1 102774230 . A ACG 0 PASS DP=39;GPV=1;SPV=0.16084;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:15,3:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
262 chr1 103296396 . T A 0 PASS DP=50;GPV=1;SPV=0.12934;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:17,2:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
263 chr1 103296399 . CT C 0 PASS DP=51;GPV=1;SPV=0.095042;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:14,2:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
264 chr1 103361403 . C CAA 0 PASS DP=37;GPV=1;SPV=0.0018037;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:4,9:1,7:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
265 chr1 103903581 . T A 0 PASS DP=56;GPV=1;SPV=0.14256;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:15,3:16,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
266 chr1 104507984 . G C 0 PASS DP=27;GPV=1;SPV=0.0028145;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:4,6:2,4:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
267 chr1 108180627 . T C 0 PASS DP=42;GPV=1;SPV=0.0063215;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,7:10,6:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
268 chr1 108765591 . T TTTTTC 0 PASS DP=47;GPV=1;SPV=0.051628;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:18,10:10,2:8,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
269 chr1 108956882 . A G 0 PASS DP=19;GPV=1;SPV=0.096154;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:4,3:4,3:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
270 chr1 109799145 . G T 0 PASS DP=61;GPV=1;SPV=0.0004629;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:22,11:12,7:10,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
271 chr1 109865700 . C G 0 PASS DP=66;GPV=1;SPV=0.021438;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:30,6:19,5:11,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
272 chr1 110680507 . GTTT G 0 PASS DP=27;GPV=1;SPV=0.082707;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,4:2,2:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
273 chr1 110710259 . G GA 0 PASS DP=40;GPV=1;SPV=0.0076326;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:13,11:8,8:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
274 chr1 111010823 . A C 0 PASS DP=50;GPV=1;SPV=0.088906;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:15,3:9,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
275 chr1 112670362 . C CTTT 0 PASS DP=28;GPV=1;SPV=0.056741;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:10,7:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
276 chr1 113070496 . G A 0 PASS DP=31;GPV=1;SPV=0.097251;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:6,2:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
277 chr1 114713908 . T C 0 PASS DP=54;GPV=1;SPV=0.00088132;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,9:13,4:5,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
278 chr1 116631317 . CA C 0 PASS DP=38;GPV=1;SPV=0.0023627;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,9:10,7:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
279 chr1 116787614 . T A 0 PASS DP=68;GPV=1;SPV=0.00027215;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:24,11:9,6:15,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
280 chr1 116936521 . T G 0 PASS DP=69;GPV=1;SPV=0.0018869;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:23,7:11,4:12,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
281 chr1 117804204 . G A 0 PASS DP=31;GPV=1;SPV=0.022967;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:3,7:1,4:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
282 chr1 119093474 . A ATACTAGATTATAGTGGGCTC 0 PASS DP=47;GPV=1;SPV=0.011304;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:18,12:9,6:9,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
283 chr1 120388912 . C T 0 PASS DP=47;GPV=1;SPV=0.15365;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:9,2:17,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
284 chr1 120651747 . TTATATATATATA T 0 PASS DP=30;GPV=1;SPV=0.22085;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,4:8,2:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
285 chr1 120667417 . C T 0 PASS DP=32;GPV=1;SPV=0.29549;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:6,2:14,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
286 chr1 120751114 . T G 0 PASS DP=22;GPV=1;SPV=0.024724;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:5,8:0,2:5,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
287 chr1 120875225 . C T 0 PASS DP=63;GPV=1;SPV=0.0054352;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:27,17:17,13:10,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
288 chr1 120894049 . T C 0 PASS DP=57;GPV=1;SPV=0.079656;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:9,1:18,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
289 chr1 121106049 . A G 0 PASS DP=81;GPV=1;SPV=0.041446;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:36,10:18,8:18,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
290 chr1 121261263 . C T 0 PASS DP=22;GPV=1;SPV=0.017225;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:0,0:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
291 chr1 121540803 . GTTTTTTTTTTTTTTTTTTTTTT G 0 PASS DP=17;GPV=1;SPV=0.052941;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:3,3:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
292 chr1 121683492 . T A 0 PASS DP=71;GPV=1;SPV=0.01255;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:30,15:11,10:19,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
293 chr1 121817841 . C A 0 PASS DP=83;GPV=1;SPV=0.0047429;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:34,16:21,11:13,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
294 chr1 121818090 . G A 0 PASS DP=55;GPV=1;SPV=0.015065;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:20,12:13,7:7,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
295 chr1 121841329 . T C 0 PASS DP=34;GPV=1;SPV=0.05132;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:1,0:12,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
296 chr1 122073628 . C T 0 PASS DP=22;GPV=1;SPV=0.15584;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:7,2:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
297 chr1 122130689 . C T 0 PASS DP=119;GPV=1;SPV=0.034173;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:62:48,14:9,4:39,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
298 chr1 122140191 . G A 0 PASS DP=29;GPV=1;SPV=0.076628;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:0,0:12,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
299 chr1 122211581 . C A 0 PASS DP=37;GPV=1;SPV=0.026676;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:11,3:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
300 chr1 122777707 . A C 0 PASS DP=58;GPV=1;SPV=0.15567;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:33,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
301 chr1 122777712 . G C 0 PASS DP=63;GPV=1;SPV=0.15343;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:36,4:36,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
302 chr1 123438511 . A G 0 PASS DP=18;GPV=1;SPV=0.23529;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:7,2:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
303 chr1 123674920 . T C 0 PASS DP=31;GPV=1;SPV=0.12318;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:0,0:15,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
304 chr1 124805293 . C A 0 PASS DP=33;GPV=1;SPV=0.094721;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:5,3:10,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
305 chr1 124805315 . T A 0 PASS DP=30;GPV=1;SPV=0.086845;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:5,3:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
306 chr1 124816173 . A C 0 PASS DP=46;GPV=1;SPV=0.019316;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,10:10,7:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
307 chr1 124829525 . C T 0 PASS DP=84;GPV=1;SPV=0.010211;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:30,12:27,10:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
308 chr1 124847703 . G C 0 PASS DP=41;GPV=1;SPV=0.40407;SS=2;SSC=3;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:12,1:17,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
309 chr1 124864436 . A G 0 PASS DP=139;GPV=1;SPV=0.015835;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:75:60,15:57,14:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
310 chr1 124886925 . C A 0 PASS DP=202;GPV=1;SPV=0.0073143;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:115:91,14:55,11:36,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
311 chr1 124904278 . C T 0 PASS DP=68;GPV=1;SPV=0.047927;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:36,6:2,2:34,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
312 chr1 124937130 . T C 0 PASS DP=105;GPV=1;SPV=0.048889;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:61:53,8:29,7:24,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
313 chr1 143217372 . G A 0 PASS DP=12153;GPV=1;SPV=7.3112e-06;SS=2;SSC=51;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:6716:5967,679:2289,208:3678,471
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
314 chr1 143219159 . T G 0 PASS DP=6082;GPV=1;SPV=0.0015091;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:3598:3201,394:848,79:2353,315
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
315 chr1 143221432 . C G 0 PASS DP=2929;GPV=1;SPV=0.0058024;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:1839:1627,206:612,25:1015,181
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
316 chr1 143238836 . A G 0 PASS DP=624;GPV=1;SPV=0.012636;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:379:312,39:185,33:127,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
317 chr1 143286130 . T TA 0 PASS DP=30;GPV=1;SPV=0.066411;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:1,1:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
318 chr1 143286145 . G T 0 PASS DP=26;GPV=1;SPV=0.066957;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:0,1:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
319 chr1 143341813 . TA T 0 PASS DP=56;GPV=1;SPV=0.032618;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,6:14,2:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
320 chr1 143548981 . G C 0 PASS DP=48;GPV=1;SPV=0.0018005;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:19,13:8,4:11,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
321 chr1 143712484 . G A 0 PASS DP=52;GPV=1;SPV=0.017225;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:5,4:3,2:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
322 chr1 144105070 . T C 0 PASS DP=18;GPV=1;SPV=0.23529;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:0,0:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
323 chr1 144139172 . GTCATT G 0 PASS DP=35;GPV=1;SPV=0.047759;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:15,4:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
324 chr1 144140974 . CTCATCTCATT C 0 PASS DP=21;GPV=1;SPV=0.11947;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:0,0:9,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
325 chr1 144809977 . A G 0 PASS DP=22;GPV=1;SPV=0.036364;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:5,3:5,3:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
326 chr1 144826218 . G A 0 PASS DP=17;GPV=1;SPV=0.082353;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:5,3:1,2:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
327 chr1 144979925 . A G 0 PASS DP=79;GPV=1;SPV=0.053176;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:46,7:27,1:19,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
328 chr1 145216558 . T TA 0 PASS DP=86;GPV=1;SPV=0.06166;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:49,6:30,3:19,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
329 chr1 145259609 . G A 0 PASS DP=84;GPV=1;SPV=0.018299;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:30,13:16,8:14,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
330 chr1 145459639 . C T 0 PASS DP=54;GPV=1;SPV=0.099494;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:6,2:21,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
331 chr1 145509861 . GC G 0 PASS DP=42;GPV=1;SPV=0.03376;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,6:12,5:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
332 chr1 145509867 . T G 0 PASS DP=44;GPV=1;SPV=0.041933;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,6:14,5:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
333 chr1 146132649 . G C 0 PASS DP=21;GPV=1;SPV=0.11947;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:9,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
334 chr1 146367117 . C CAAATAAAT 0 PASS DP=24;GPV=1;SPV=0.2066;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,4:5,1:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
335 chr1 146471895 . T A 0 PASS DP=54;GPV=1;SPV=0.26667;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:6,2:4,1:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
336 chr1 146814489 . A G 0 PASS DP=41;GPV=1;SPV=0.012445;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,9:7,3:4,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
337 chr1 146822050 . G A 0 PASS DP=46;GPV=1;SPV=0.028846;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:4,7:0,5:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
338 chr1 146898337 . GA G 0 PASS DP=27;GPV=1;SPV=0.1037;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:12,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
339 chr1 146978456 . G T 0 PASS DP=50;GPV=1;SPV=0.095044;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:27,5:11,4:16,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
340 chr1 147059346 . GAGAA G 0 PASS DP=51;GPV=1;SPV=0.0066512;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:16,12:9,8:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
341 chr1 147314778 . C CAA 0 PASS DP=48;GPV=1;SPV=0.0078195;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:18,13:13,10:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
342 chr1 147820458 . C A 0 PASS DP=76;GPV=1;SPV=2.3888e-06;SS=2;SSC=56;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:25,21:16,12:9,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
343 chr1 148102043 . A G 0 PASS DP=81;GPV=1;SPV=0.033201;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:37,5:9,1:28,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
344 chr1 148109008 . A T 0 PASS DP=56;GPV=1;SPV=0.097906;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:7,2:21,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
345 chr1 148471265 . T TACACAC 0 PASS DP=58;GPV=1;SPV=0.080354;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:26,4:15,2:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
346 chr1 148631544 . G A 0 PASS DP=30;GPV=1;SPV=0.14143;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:10,1:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
347 chr1 148950409 . T A 0 PASS DP=94;GPV=1;SPV=0.015249;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:68:56,12:21,5:35,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
348 chr1 149080154 . C G 0 PASS DP=109;GPV=1;SPV=0.0068761;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:42,16:11,2:31,14
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
349 chr1 149370784 . CA C 0 PASS DP=52;GPV=1;SPV=0.0091476;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:15,7:7,5:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
350 chr1 149564326 . G A 0 PASS DP=36;GPV=1;SPV=0.029368;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,7:9,2:7,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
351 chr1 149653495 . A ATGTG 0 PASS DP=35;GPV=1;SPV=0.10447;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:7,3:9,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
352 chr1 149676655 . C T 0 PASS DP=74;GPV=1;SPV=0.01473;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:24,10:10,9:14,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
353 chr1 149709540 . T C 0 PASS DP=80;GPV=1;SPV=0.0021542;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:29,14:14,6:15,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
354 chr1 150023512 . T G 0 PASS DP=69;GPV=1;SPV=1.1624e-05;SS=2;SSC=49;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:22,16:10,9:12,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
355 chr1 150260751 . G GAT 0 PASS DP=27;GPV=1;SPV=0.040724;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:5,5:1,3:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
356 chr1 150879491 . T TA 0 PASS DP=25;GPV=1;SPV=0.03913;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:6,3:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
357 chr1 150898932 . AT A 0 PASS DP=48;GPV=1;SPV=0.099229;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:26,5:16,1:10,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
358 chr1 150898935 . T A 0 PASS DP=35;GPV=1;SPV=0.13093;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:12,1:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
359 chr1 151148183 . A T 0 PASS DP=68;GPV=1;SPV=0.0021064;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:31,12:19,6:12,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
360 chr1 151600630 . G A 0 PASS DP=51;GPV=1;SPV=0.0369;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:26,7:8,1:18,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
361 chr1 151725107 . C CT 0 PASS DP=25;GPV=1;SPV=0.016968;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:4,6:1,5:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
362 chr1 151758506 . AAG A 0 PASS DP=47;GPV=1;SPV=0.039385;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:21,12:5,6:16,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
363 chr1 151758508 . G A 0 PASS DP=40;GPV=1;SPV=0.18479;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:17,5:3,1:14,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
364 chr1 152289480 . C T 0 PASS DP=58;GPV=1;SPV=0.17398;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:34,4:19,2:15,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
365 chr1 152774068 . A C 0 PASS DP=68;GPV=1;SPV=4.1835e-06;SS=2;SSC=53;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:19,15:8,9:11,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
366 chr1 153169283 . G C 0 PASS DP=71;GPV=1;SPV=0.00014469;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:25,12:9,5:16,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
367 chr1 153709363 . C T 0 PASS DP=58;GPV=1;SPV=2.1506e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:16,13:9,7:7,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
368 chr1 155204585 . C CA 0 PASS DP=44;GPV=1;SPV=0.040363;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:19,11:7,8:12,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
369 chr1 155517793 . CTTTTTTTTT C 0 PASS DP=29;GPV=1;SPV=0.049017;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:6,4:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
370 chr1 155617244 . C CAGGCTCATGGAGGTTCCTGTCTGGGGT 0 PASS DP=62;GPV=1;SPV=0.031538;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:22,8:13,2:9,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
371 chr1 155858636 . G GT 0 PASS DP=31;GPV=1;SPV=0.20399;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,4:10,3:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
372 chr1 156292376 . AGTGTGTGTGTGTGT A 0 PASS DP=46;GPV=1;SPV=0.0079921;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:13,11:6,7:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
373 chr1 157165238 . A T 0 PASS DP=60;GPV=1;SPV=0.070707;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:3,4:1,1:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
374 chr1 157340218 . G GT 0 PASS DP=27;GPV=1;SPV=0.051084;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,5:3,4:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
375 chr1 157665600 . C CTCTT 0 PASS DP=49;GPV=1;SPV=0.0033296;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,7:4,3:12,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
376 chr1 157984180 . TC T 0 PASS DP=47;GPV=1;SPV=0.22942;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:12,2:17,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
377 chr1 159957140 . C CAA 0 PASS DP=21;GPV=1;SPV=0.015152;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:0,4:0,3:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
378 chr1 160318480 . AAAAAAAAAAAAC A 0 PASS DP=35;GPV=1;SPV=0.03183;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,9:6,4:6,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
379 chr1 160828888 . G A 0 PASS DP=30;GPV=1;SPV=0.14559;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,5:9,1:3,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
380 chr1 161055918 . A ATAT 0 PASS DP=38;GPV=1;SPV=0.036566;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,6:13,4:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
381 chr1 161055927 . A T 0 PASS DP=40;GPV=1;SPV=0.059981;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,6:12,4:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
382 chr1 161055929 . AT A 0 PASS DP=46;GPV=1;SPV=0.040221;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:22,6:14,4:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
383 chr1 161055935 . T TATA 0 PASS DP=40;GPV=1;SPV=0.033935;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,9:9,7:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
384 chr1 161187944 . C CT 0 PASS DP=19;GPV=1;SPV=0.05418;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,4:3,3:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
385 chr1 161423322 . TG T 0 PASS DP=37;GPV=1;SPV=0.011679;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:4,7:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
386 chr1 161558554 . G T 0 PASS DP=79;GPV=1;SPV=0.025171;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:32,13:19,2:13,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
387 chr1 162124506 . TG T 0 PASS DP=66;GPV=1;SPV=0.1916;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:43,5:25,3:18,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
388 chr1 162485998 . A AT 0 PASS DP=44;GPV=1;SPV=0.024807;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,9:9,6:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
389 chr1 164978035 . C CA 0 PASS DP=25;GPV=1;SPV=0.037185;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:8,5:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
390 chr1 165103400 . C T 0 PASS DP=25;GPV=1;SPV=0.033948;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,8:2,1:5,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
391 chr1 165350173 . CA C 0 PASS DP=33;GPV=1;SPV=0.0015905;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:2,9:1,8:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
392 chr1 165596298 . ATT A 0 PASS DP=29;GPV=1;SPV=0.10288;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,6:14,4:0,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
393 chr1 166203242 . G GCT 0 PASS DP=39;GPV=1;SPV=0.037811;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:15,11:5,3:10,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
394 chr1 167801285 . C CT 0 PASS DP=42;GPV=1;SPV=0.0088119;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:14,12:8,6:6,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
395 chr1 168158595 . TA T 0 PASS DP=34;GPV=1;SPV=0.0047847;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:4,5:1,3:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
396 chr1 169478523 . ATT A 0 PASS DP=29;GPV=1;SPV=0.037648;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:2,2:7,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
397 chr1 169490735 . CA C 0 PASS DP=30;GPV=1;SPV=0.14757;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:10,6:9,5:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
398 chr1 170244419 . A T 0 PASS DP=74;GPV=1;SPV=3.308e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:25,14:12,7:13,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
399 chr1 174833402 . A G 0 PASS DP=23;GPV=1;SPV=0.13684;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:4,2:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
400 chr1 175030281 . T C 0 PASS DP=72;GPV=1;SPV=0.0001697;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:27,13:13,8:14,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
401 chr1 176454837 . C A 0 PASS DP=51;GPV=1;SPV=0.0017779;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:20,11:9,5:11,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
402 chr1 178695649 . T TA 0 PASS DP=61;GPV=1;SPV=0.027239;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:19,9:11,4:8,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
403 chr1 179040690 . C T 0 PASS DP=38;GPV=1;SPV=0.0064207;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:15,12:11,3:4,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
404 chr1 179287327 . T TAGAAAGAAAGAA 0 PASS DP=39;GPV=1;SPV=0.042236;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:9,8:6,7:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
405 chr1 180287409 . CA C 0 PASS DP=26;GPV=1;SPV=0.094071;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:8,3:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
406 chr1 180514584 . GA G 0 PASS DP=21;GPV=1;SPV=0.017028;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,6:4,5:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
407 chr1 180680357 . CT C 0 PASS DP=36;GPV=1;SPV=0.1182;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,6:13,2:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
408 chr1 181210081 . T G 0 PASS DP=64;GPV=1;SPV=0.0011498;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:26,11:15,6:11,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
409 chr1 181893628 . A AGT 0 PASS DP=50;GPV=1;SPV=0.0401;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:10,11:8,6:2,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
410 chr1 182174861 . CTT C 0 PASS DP=28;GPV=1;SPV=0.0018511;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:2,8:0,6:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
411 chr1 182868520 . C CTTTTTTTTTT 0 PASS DP=30;GPV=1;SPV=0.21839;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:9,3:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
412 chr1 182977144 . C CAA 0 PASS DP=39;GPV=1;SPV=0.018873;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:6,4:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
413 chr1 183229635 . C CAA 0 PASS DP=43;GPV=1;SPV=0.13206;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:24,6:17,5:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
414 chr1 184414221 . C T 0 PASS DP=81;GPV=1;SPV=0.00037035;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:35,14:16,7:19,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
415 chr1 185225693 . A G 0 PASS DP=73;GPV=1;SPV=0.033417;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:33,5:18,2:15,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
416 chr1 186263030 . CATAATAATA C 0 PASS DP=38;GPV=1;SPV=0.04484;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,6:12,3:1,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
417 chr1 186750129 . G T 0 PASS DP=73;GPV=1;SPV=0.00016884;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:25,11:7,6:18,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
418 chr1 187827169 . G GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTA 0 PASS DP=34;GPV=1;SPV=0.045822;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:11,10:8,7:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
419 chr1 191414328 . T C 0 PASS DP=78;GPV=1;SPV=0.035498;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:36,5:16,2:20,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
420 chr1 194082117 . C G 0 PASS DP=71;GPV=1;SPV=0.014019;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:33,7:15,5:18,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
421 chr1 194151542 . CTTT C 0 PASS DP=28;GPV=1;SPV=0.008238;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:8,10:4,7:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
422 chr1 194743209 . C CT 0 PASS DP=38;GPV=1;SPV=0.083396;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,6:10,1:10,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
423 chr1 194978296 . T G 0 PASS DP=81;GPV=1;SPV=0.00059684;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:31,10:11,6:20,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
424 chr1 195243063 . G T 0 PASS DP=64;GPV=1;SPV=3.4904e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:21,15:8,8:13,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
425 chr1 196714701 . A G 0 PASS DP=19;GPV=1;SPV=0.024887;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:3,6:3,5:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
426 chr1 196903286 . G T 0 PASS DP=61;GPV=1;SPV=0.00035641;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:24,15:13,5:11,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
427 chr1 199886021 . G A 0 PASS DP=45;GPV=1;SPV=0.0002204;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:11,17:7,7:4,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
428 chr1 199912436 . C A 0 PASS DP=36;GPV=1;SPV=0.20399;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,4:11,1:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
429 chr1 200014606 . T A 0 PASS DP=73;GPV=1;SPV=4.3618e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:26,15:10,10:16,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
430 chr1 200094182 . G T 0 PASS DP=55;GPV=1;SPV=0.079987;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:29,5:15,2:14,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
431 chr1 200587301 . C T 0 PASS DP=48;GPV=1;SPV=0.0041401;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,8:9,4:9,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
432 chr1 200689150 . C G 0 PASS DP=45;GPV=1;SPV=0.014419;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,8:5,2:15,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
433 chr1 201269186 . T C 0 PASS DP=75;GPV=1;SPV=0.00099051;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:28,9:14,4:14,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
434 chr1 202231821 . G A 0 PASS DP=66;GPV=1;SPV=0.0069077;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:27,7:13,5:14,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
435 chr1 202986372 . CAAAA C 0 PASS DP=41;GPV=1;SPV=0.03908;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,6:7,5:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
436 chr1 203973992 . A G 0 PASS DP=57;GPV=1;SPV=0.028362;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:24,5:11,3:13,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
437 chr1 204597995 . GT G 0 PASS DP=32;GPV=1;SPV=0.12318;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,4:9,2:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
438 chr1 204754578 . T C 0 PASS DP=45;GPV=1;SPV=0.0035259;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,9:10,5:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
439 chr1 205538068 . G T 0 PASS DP=62;GPV=1;SPV=0.0045484;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:29,11:17,7:12,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
440 chr1 207359516 . C CT 0 PASS DP=29;GPV=1;SPV=0.031734;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:5,10:1,7:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
441 chr1 207515162 . CATATATAGGTATATACATATAT C 0 PASS DP=63;GPV=1;SPV=0.039984;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:26,10:18,5:8,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
442 chr1 207617598 . TATATATATATATATAGAGAGAGAGAGAGAGAGAGAG T 0 PASS DP=30;GPV=1;SPV=0.11832;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:8,3:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
443 chr1 207796695 . C T 0 PASS DP=52;GPV=1;SPV=0.20294;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,4:9,1:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
444 chr1 209075904 . A C 0 PASS DP=32;GPV=1;SPV=0.028571;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:19:0,4:0,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
445 chr1 210450294 . T TG 0 PASS DP=39;GPV=1;SPV=0.0048875;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:9,10:5,5:4,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
446 chr1 210502383 . C CAAAA 0 PASS DP=34;GPV=1;SPV=0.074661;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:6,5:3,3:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
447 chr1 211462755 . A G 0 PASS DP=47;GPV=1;SPV=0.0034395;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:6,5:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
448 chr1 211700176 . A AGAAG 0 PASS DP=46;GPV=1;SPV=0.029941;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:13,6:4,4:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
449 chr1 212235662 . A T 0 PASS DP=57;GPV=1;SPV=0.00034731;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,9:8,5:9,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
450 chr1 212253698 . C CAA 0 PASS DP=46;GPV=1;SPV=0.015677;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,8:9,7:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
451 chr1 212891303 . TTGGGAGGCTGAGGCAGAAGAATTGCTTGAATC T 0 PASS DP=53;GPV=1;SPV=0.0095284;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,9:7,4:12,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
452 chr1 213702553 . T A 0 PASS DP=68;GPV=1;SPV=0.0013541;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:31,14:12,8:19,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
453 chr1 213798182 . G T 0 PASS DP=69;GPV=1;SPV=0.0091975;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:32,8:14,5:18,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
454 chr1 214569915 . TGATAGATA T 0 PASS DP=31;GPV=1;SPV=0.039683;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:20:1,4:0,0:1,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
455 chr1 214869483 . C T 0 PASS DP=34;GPV=1;SPV=0.29596;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:20,3:12,1:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
456 chr1 214988039 . A AT 0 PASS DP=43;GPV=1;SPV=0.020315;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:13,10:5,3:8,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
457 chr1 215037002 . C CTTT 0 PASS DP=47;GPV=1;SPV=0.0043848;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,10:5,6:10,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
458 chr1 215510953 . C G 0 PASS DP=67;GPV=1;SPV=0.00032467;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:24,11:12,6:12,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
459 chr1 215740118 . T C 0 PASS DP=61;GPV=1;SPV=8.0199e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:17,15:5,5:12,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
460 chr1 216586581 . C CT 0 PASS DP=22;GPV=1;SPV=0.082707;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,4:5,2:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
461 chr1 216658848 . AAGAAGAGAAGAGAAG A 0 PASS DP=41;GPV=1;SPV=0.045792;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:12,7:5,3:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
462 chr1 217611387 . GCTTCA G 0 PASS DP=76;GPV=1;SPV=0.00024118;SS=2;SSC=36;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:23,23:17,15:6,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
463 chr1 218026763 . A AT 0 PASS DP=39;GPV=1;SPV=0.001482;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:7,11:3,9:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
464 chr1 218643556 . A AGTGTGTGTGTGTGTGTGTGTGT 0 PASS DP=26;GPV=1;SPV=0.049428;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:8,10:5,5:3,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
465 chr1 219698217 . TCGCGCGCG T 0 PASS DP=31;GPV=1;SPV=0.1;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:0,2:0,2:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
466 chr1 219942272 . C G 0 PASS DP=65;GPV=1;SPV=0.065183;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:38,7:26,4:12,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
467 chr1 221173349 . G T 0 PASS DP=37;GPV=1;SPV=0.0079853;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:7,2:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
468 chr1 221545261 . A G 0 PASS DP=73;GPV=1;SPV=1.4407e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:25,17:10,8:15,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
469 chr1 221877823 . G T 0 PASS DP=42;GPV=1;SPV=0.010459;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:5,4:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
470 chr1 222175243 . G GTTTATTTATTTA 0 PASS DP=58;GPV=1;SPV=0.035881;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:27,10:12,8:15,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
471 chr1 222464470 . G A 0 PASS DP=43;GPV=1;SPV=0.11553;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:23,5:12,2:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
472 chr1 222492235 . C A 0 PASS DP=63;GPV=1;SPV=0.0099688;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:29,8:16,5:13,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
473 chr1 223937919 . C T 0 PASS DP=35;GPV=1;SPV=0.0070449;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:10,10:4,6:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
474 chr1 224588968 . G GTTTTTTTTTTT 0 PASS DP=33;GPV=1;SPV=0.16643;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,4:11,3:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
475 chr1 224735880 . G T 0 PASS DP=72;GPV=1;SPV=2.0437e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:23,14:9,6:14,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
476 chr1 226176429 . C CA 0 PASS DP=31;GPV=1;SPV=0.14945;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,4:10,2:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
477 chr1 227457651 . A ATTT 0 PASS DP=29;GPV=1;SPV=0.022704;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:6,10:3,5:3,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
478 chr1 229060485 . G A 0 PASS DP=59;GPV=1;SPV=0.087068;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:32,5:12,1:20,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
479 chr1 230640922 . G A 0 PASS DP=41;GPV=1;SPV=0.0053746;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:10,10:5,7:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
480 chr1 230768045 . T TA 0 PASS DP=46;GPV=1;SPV=0.17137;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:21,4:13,1:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
481 chr1 231024914 . C CT 0 PASS DP=22;GPV=1;SPV=0.063246;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,5:4,4:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
482 chr1 231045947 . G A 0 PASS DP=28;GPV=1;SPV=0.14286;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:1,2:0,1:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
483 chr1 231532131 . AACACACACACACACACACACACACACAC A 0 PASS DP=29;GPV=1;SPV=0.0087495;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:7,9:4,4:3,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
484 chr1 231615387 . TTC T 0 PASS DP=43;GPV=1;SPV=0.038146;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:9,4:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
485 chr1 232386566 . C T 0 PASS DP=76;GPV=1;SPV=0.00036492;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:27,10:9,6:18,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
486 chr1 233318563 . C CTTTTTCTT 0 PASS DP=23;GPV=1;SPV=0.017544;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,5:3,3:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
487 chr1 234779794 . C T 0 PASS DP=286;GPV=1;SPV=0.036448;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:157:133,24:70,13:63,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
488 chr1 235452548 . T C 0 PASS DP=49;GPV=1;SPV=0.46154;SS=2;SSC=3;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:7,2:4,1:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
489 chr1 235619159 . T A 0 PASS DP=26;GPV=1;SPV=0.20553;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,4:7,2:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
490 chr1 235877855 . C CAA 0 PASS DP=39;GPV=1;SPV=0.051826;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,6:10,4:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
491 chr1 236094275 . C CT 0 PASS DP=22;GPV=1;SPV=0.017028;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,6:5,5:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
492 chr1 237070031 . C CTT 0 PASS DP=40;GPV=1;SPV=0.022366;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,9:9,7:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
493 chr1 237623359 . G GTTTCTTTCTTTCTTTGTTTGTTTC 0 PASS DP=23;GPV=1;SPV=0.023537;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,5:4,3:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
494 chr1 240993117 . A G 0 PASS DP=29;GPV=1;SPV=0.37564;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,4:12,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
495 chr1 242394382 . G GTA 0 PASS DP=50;GPV=1;SPV=0.0011874;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:18,11:6,7:12,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
496 chr1 242421072 . C T 0 PASS DP=50;GPV=1;SPV=0.033818;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:26,8:16,5:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
497 chr1 242795319 . T TTGTGTGTGTGTG 0 PASS DP=43;GPV=1;SPV=0.020884;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,9:11,1:5,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
498 chr1 242807126 . CA C 0 PASS DP=37;GPV=1;SPV=0.0053235;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:4,5:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
499 chr1 242945390 . CA C 0 PASS DP=24;GPV=1;SPV=0.05418;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,4:6,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
500 chr1 243108698 . C CTT 0 PASS DP=29;GPV=1;SPV=0.04053;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:10,3:2,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
501 chr1 243422206 . C A 0 PASS DP=66;GPV=1;SPV=2.5999e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:22,16:9,10:13,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
502 chr1 243910533 . G C 0 PASS DP=65;GPV=1;SPV=0.014788;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:30,7:13,3:17,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
503 chr1 244357228 . T TTACTTTCTAATGAGGGCAGGG 0 PASS DP=39;GPV=1;SPV=0.029963;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,10:9,1:6,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
504 chr1 244664020 . G GA 0 PASS DP=36;GPV=1;SPV=0.024163;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,7:6,6:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
505 chr1 244962517 . T A 0 PASS DP=69;GPV=1;SPV=0.28876;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:25,4:16,2:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
506 chr1 245244756 . T TCACACA 0 PASS DP=45;GPV=1;SPV=0.0026087;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:5,14:4,10:1,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
507 chr1 245408349 . CTT C 0 PASS DP=38;GPV=1;SPV=0.070365;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:20,7:11,3:9,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
508 chr1 246137147 . A T 0 PASS DP=57;GPV=1;SPV=7.0323e-06;SS=2;SSC=51;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:15,15:7,8:8,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
509 chr1 246233552 . A T 0 PASS DP=24;GPV=1;SPV=0.12846;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:8,2:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
510 chr1 246276021 . G GT 0 PASS DP=47;GPV=1;SPV=0.0073497;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:20,9:7,2:13,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
511 chr1 246546312 . T TAAAAAAAGAAAAAAA 0 PASS DP=46;GPV=1;SPV=0.041497;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,8:8,7:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
512 chr1 247170154 . G A 0 PASS DP=36;GPV=1;SPV=0.045151;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,7:9,6:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
513 chr1 248445024 . CTT C 0 PASS DP=73;GPV=1;SPV=0.075568;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:24,1:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
514 chr1 248474970 . T C 0 PASS DP=48;GPV=1;SPV=0.14084;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:15,3:11,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
515 chr1 248553696 . G T 0 PASS DP=82;GPV=1;SPV=0.043382;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:11,4:5,2:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
516 chr1 248566888 . G A 0 PASS DP=55;GPV=1;SPV=0.024262;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:23,9:11,4:12,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
517 chr1 248646853 . TATAA T 0 PASS DP=40;GPV=1;SPV=0.064595;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:16,3:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
518 chr1 248933423 . C A 0 PASS DP=61;GPV=1;SPV=0.15761;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:23,1:12,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
519 chr10 39740 . G C 0 PASS DP=29;GPV=1;SPV=0.052107;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:5,1:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
520 chr10 264916 . G A 0 PASS DP=28;GPV=1;SPV=0.088889;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:9,3:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
521 chr10 384271 . CT C 0 PASS DP=26;GPV=1;SPV=0.040458;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,7:8,4:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
522 chr10 1987672 . A G 0 PASS DP=46;GPV=1;SPV=0.10396;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,5:9,2:16,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
523 chr10 2164519 . T TA 0 PASS DP=38;GPV=1;SPV=0.039018;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,10:11,6:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
524 chr10 2252824 . T G 0 PASS DP=67;GPV=1;SPV=0.0003089;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:25,12:7,6:18,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
525 chr10 2354136 . CATAT C 0 PASS DP=29;GPV=1;SPV=0.042556;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:5,3:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
526 chr10 2423901 . T C 0 PASS DP=51;GPV=1;SPV=0.0032719;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:15,13:4,5:11,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
527 chr10 3062566 . T A 0 PASS DP=41;GPV=1;SPV=0.021122;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:7,2:4,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
528 chr10 3597990 . C T 0 PASS DP=37;GPV=1;SPV=0.04469;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:6,6:0,4:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
529 chr10 5842915 . C CAAAT 0 PASS DP=56;GPV=1;SPV=0.011265;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:22,10:11,7:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
530 chr10 5957593 . C CTT 0 PASS DP=31;GPV=1;SPV=0.010837;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,5:4,4:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
531 chr10 6302379 . T G 0 PASS DP=19;GPV=1;SPV=0.085139;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:1,3:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
532 chr10 6960037 . A T 0 PASS DP=65;GPV=1;SPV=0.00024732;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:25,14:12,4:13,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
533 chr10 7228730 . TCTTTCCTTTC T 0 PASS DP=38;GPV=1;SPV=0.11076;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,4:9,3:9,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
534 chr10 7634088 . C CAAAA 0 PASS DP=38;GPV=1;SPV=0.011294;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,7:9,6:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
535 chr10 7988572 . C CA 0 PASS DP=30;GPV=1;SPV=0.086845;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:9,3:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
536 chr10 8268931 . T TA 0 PASS DP=33;GPV=1;SPV=0.049017;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,6:3,4:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
537 chr10 8268957 . T G 0 PASS DP=38;GPV=1;SPV=0.05251;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:8,3:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
538 chr10 8471423 . G GTT 0 PASS DP=45;GPV=1;SPV=0.0094549;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:11,7:3,5:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
539 chr10 8536317 . C A 0 PASS DP=51;GPV=1;SPV=0.14763;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:22,4:17,1:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
540 chr10 11628933 . CT C 0 PASS DP=27;GPV=1;SPV=0.12174;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,4:10,3:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
541 chr10 12056448 . A ATTTTT 0 PASS DP=29;GPV=1;SPV=0.17217;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,5:4,3:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
542 chr10 13136505 . C CAAAA 0 PASS DP=32;GPV=1;SPV=0.1037;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,4:9,3:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
543 chr10 13290115 . CAA C 0 PASS DP=26;GPV=1;SPV=0.011899;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,8:7,7:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
544 chr10 13750073 . A G 0 PASS DP=44;GPV=1;SPV=0.14038;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:27,7:19,6:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
545 chr10 13884103 . A AAC 0 PASS DP=40;GPV=1;SPV=0.023137;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,10:7,8:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
546 chr10 15037580 . C CAAAAAAAAAAAA 0 PASS DP=45;GPV=1;SPV=0.029599;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:21,8:8,6:13,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
547 chr10 15135203 . T G 0 PASS DP=55;GPV=1;SPV=0.031709;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:29,8:15,4:14,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
548 chr10 15749660 . C CTTTTTTT 0 PASS DP=33;GPV=1;SPV=0.085739;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,5:11,2:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
549 chr10 15827176 . TA T 0 PASS DP=31;GPV=1;SPV=0.021859;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:8,10:5,8:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
550 chr10 16955374 . CAAAAA C 0 PASS DP=26;GPV=1;SPV=0.028284;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,7:5,6:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
551 chr10 17379320 . A AGAAGAGGAGAGGG 0 PASS DP=50;GPV=1;SPV=0.035087;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,10:15,8:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
552 chr10 17474821 . G GT 0 PASS DP=36;GPV=1;SPV=0.0054674;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:11,10:5,9:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
553 chr10 17762616 . T C 0 PASS DP=34;GPV=1;SPV=0.25455;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:5,3:1,2:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
554 chr10 18499807 . A C 0 PASS DP=57;GPV=1;SPV=0.04473;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:29,6:15,3:14,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
555 chr10 19238757 . T C 0 PASS DP=27;GPV=1;SPV=0.032647;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,8:6,5:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
556 chr10 20333222 . C A 0 PASS DP=48;GPV=1;SPV=0.091248;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:15,5:3,4:12,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
557 chr10 20348042 . CCA C 0 PASS DP=38;GPV=1;SPV=0.0070433;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:5,10:5,5:0,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
558 chr10 21382464 . CTT C 0 PASS DP=32;GPV=1;SPV=0.034106;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:11,11:5,9:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
559 chr10 22197222 . C CT 0 PASS DP=43;GPV=1;SPV=0.029097;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:17,12:11,8:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
560 chr10 22198049 . A T 0 PASS DP=35;GPV=1;SPV=0.025362;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,7:10,4:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
561 chr10 23134573 . G GAA 0 PASS DP=34;GPV=1;SPV=0.20399;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,4:6,3:10,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
562 chr10 23817962 . CAT C 0 PASS DP=24;GPV=1;SPV=0.11538;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,4:4,2:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
563 chr10 25241316 . C T 0 PASS DP=42;GPV=1;SPV=0.15679;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:11,1:12,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
564 chr10 25450826 . T A 0 PASS DP=60;GPV=1;SPV=0.0017392;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:24,10:12,5:12,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
565 chr10 26333448 . CTTTTT C 0 PASS DP=31;GPV=1;SPV=0.10613;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,5:9,4:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
566 chr10 26432529 . A AAAAATAAAAT 0 PASS DP=33;GPV=1;SPV=0.013387;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:8,7:1,4:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
567 chr10 27442949 . ATATACATG A 0 PASS DP=48;GPV=1;SPV=0.021198;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:22,7:13,6:9,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
568 chr10 27442960 . T C 0 PASS DP=50;GPV=1;SPV=0.014495;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:19,7:10,6:9,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
569 chr10 28460077 . C CTTT 0 PASS DP=27;GPV=1;SPV=0.0052174;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,6:3,2:3,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
570 chr10 28541417 . T G 0 PASS DP=28;GPV=1;SPV=0.091949;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,7:4,6:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
571 chr10 28541419 . TG T 0 PASS DP=32;GPV=1;SPV=0.083772;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,7:7,3:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
572 chr10 29003220 . AT A 0 PASS DP=46;GPV=1;SPV=0.0025933;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:18,11:7,6:11,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
573 chr10 29003240 . TTA T 0 PASS DP=42;GPV=1;SPV=0.028014;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,8:8,4:9,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
574 chr10 29003243 . T A 0 PASS DP=39;GPV=1;SPV=0.031702;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,7:6,4:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
575 chr10 29702175 . C CAA 0 PASS DP=23;GPV=1;SPV=0.11947;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,4:6,2:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
576 chr10 30037934 . T TAAA 0 PASS DP=37;GPV=1;SPV=0.036129;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,9:9,5:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
577 chr10 30230380 . G GT 0 PASS DP=20;GPV=1;SPV=0.01049;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:3,7:3,5:0,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
578 chr10 30349279 . T TA 0 PASS DP=32;GPV=1;SPV=0.046407;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,6:4,5:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
579 chr10 30431035 . T A 0 PASS DP=56;GPV=1;SPV=0.044393;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:30,7:14,4:16,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
580 chr10 30431036 . C G 0 PASS DP=58;GPV=1;SPV=0.025513;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:30,8:14,5:16,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
581 chr10 30611566 . G A 0 PASS DP=35;GPV=1;SPV=0.016716;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,6:10,5:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
582 chr10 30626969 . C T 0 PASS DP=62;GPV=1;SPV=0.049127;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:15,1:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
583 chr10 30650858 . C CAAATAAATAAAT 0 PASS DP=42;GPV=1;SPV=0.00021441;SS=2;SSC=36;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:5,11:0,4:5,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
584 chr10 30661198 . C CT 0 PASS DP=43;GPV=1;SPV=0.011004;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,10:8,3:7,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
585 chr10 30739448 . AAG A 0 PASS DP=49;GPV=1;SPV=0.035509;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:16,10:15,7:1,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
586 chr10 31675541 . G T 0 PASS DP=71;GPV=1;SPV=0.0022464;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:32,11:17,6:15,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
587 chr10 31980130 . TAGATAGGA T 0 PASS DP=52;GPV=1;SPV=0.0035849;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:16,14:11,5:5,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
588 chr10 32649442 . C A 0 PASS DP=61;GPV=1;SPV=1.6015e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:19,17:11,6:8,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
589 chr10 33837987 . G C 0 PASS DP=68;GPV=1;SPV=0.001508;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:29,11:11,7:18,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
590 chr10 33842853 . A C 0 PASS DP=43;GPV=1;SPV=0.040465;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:18,8:10,3:8,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
591 chr10 33864862 . TCA T 0 PASS DP=49;GPV=1;SPV=0.029588;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:12,11:10,9:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
592 chr10 35861759 . C G 0 PASS DP=51;GPV=1;SPV=0.00014249;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:16,13:9,8:7,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
593 chr10 37214540 . G GTA 0 PASS DP=42;GPV=1;SPV=0.014023;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,10:8,4:7,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
594 chr10 37961857 . G A 0 PASS DP=43;GPV=1;SPV=0.0036228;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:16,18:12,6:4,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
595 chr10 38623792 . C CA 0 PASS DP=81;GPV=1;SPV=0.01031;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:35,10:22,5:13,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
596 chr10 38646573 . T A 0 PASS DP=168;GPV=1;SPV=0.042626;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:90:74,16:40,8:34,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
597 chr10 38655361 . AG A 0 PASS DP=112;GPV=1;SPV=0.0077239;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:60:44,16:15,4:29,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
598 chr10 38719714 . C T 0 PASS DP=65;GPV=1;SPV=0.052773;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:32,5:19,4:13,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
599 chr10 38886532 . A T 0 PASS DP=49;GPV=1;SPV=0.037012;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:19,7:10,6:9,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
600 chr10 38961421 . G A 0 PASS DP=144;GPV=1;SPV=0.027722;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:72:63,9:35,4:28,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
601 chr10 39160804 . G T 0 PASS DP=81;GPV=1;SPV=0.0014612;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:40,15:17,6:23,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
602 chr10 39468920 . A G 0 PASS DP=28;GPV=1;SPV=0.044444;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,5:6,4:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
603 chr10 39576813 . C T 0 PASS DP=200;GPV=1;SPV=0.044303;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:120:100,20:54,11:46,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
604 chr10 39999510 . T C 0 PASS DP=220;GPV=1;SPV=0.013792;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:126:113,13:66,4:47,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
605 chr10 40412289 . T G 0 PASS DP=203;GPV=1;SPV=0.019829;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:118:97,21:60,7:37,14
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
606 chr10 40483815 . T C 0 PASS DP=67;GPV=1;SPV=0.04926;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:30,11:30,10:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
607 chr10 40545213 . A G 0 PASS DP=53;GPV=1;SPV=0.048244;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:27,6:12,5:15,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
608 chr10 40586508 . G T 0 PASS DP=88;GPV=1;SPV=0.011161;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:37,17:4,2:33,15
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
609 chr10 40593167 . T TG 0 PASS DP=65;GPV=1;SPV=0.11654;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:38,5:13,1:25,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
610 chr10 40595283 . T G 0 PASS DP=91;GPV=1;SPV=0.013497;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:39,12:34,11:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
611 chr10 40607366 . C G 0 PASS DP=239;GPV=1;SPV=0.025414;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:141:116,25:98,23:18,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
612 chr10 41175698 . G A 0 PASS DP=73;GPV=1;SPV=0.014021;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:32,10:5,4:27,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
613 chr10 41188899 . C A 0 PASS DP=58;GPV=1;SPV=0.19386;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:0,0:35,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
614 chr10 41221965 . C G 0 PASS DP=23;GPV=1;SPV=0.15415;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:9,3:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
615 chr10 41235509 . G A 0 PASS DP=26;GPV=1;SPV=0.047826;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:0,1:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
616 chr10 41330689 . T A 0 PASS DP=48;GPV=1;SPV=0.23474;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:27,3:5,2:22,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
617 chr10 41502686 . C G 0 PASS DP=65;GPV=1;SPV=0.09755;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:25,3:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
618 chr10 41530219 . T G 0 PASS DP=388;GPV=1;SPV=0.00092621;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:217:176,41:96,5:80,36
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
619 chr10 41568363 . G C 0 PASS DP=146;GPV=1;SPV=0.034801;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:80:70,10:18,6:52,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
620 chr10 41574820 . C A 0 PASS DP=371;GPV=1;SPV=0.032569;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:211:172,31:79,18:93,13
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
621 chr10 41580002 . T TA 0 PASS DP=52;GPV=1;SPV=0.087731;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:21,3:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
622 chr10 41590751 . G T 0 PASS DP=100;GPV=1;SPV=0.030865;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:66:58,8:50,7:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
623 chr10 41591877 . C G 0 PASS DP=59;GPV=1;SPV=0.036993;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:31,7:0,1:31,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
624 chr10 41700179 . G A 0 PASS DP=30;GPV=1;SPV=0.17679;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:16,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
625 chr10 41873892 . A C 0 PASS DP=71;GPV=1;SPV=0.0077412;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:29,16:11,8:18,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
626 chr10 41876136 . A AATGGAATGGAATGGT 0 PASS DP=115;GPV=1;SPV=0.039452;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:73:55,11:26,4:29,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
627 chr10 41882443 . G C 0 PASS DP=382;GPV=1;SPV=0.0082439;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:218:180,38:99,16:81,22
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
628 chr10 41883355 . C A 0 PASS DP=340;GPV=1;SPV=0.021995;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:185:152,33:93,23:59,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
629 chr10 41886095 . T C 0 PASS DP=446;GPV=1;SPV=0.017344;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:244:208,36:111,18:97,18
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
630 chr10 41886098 . A T 0 PASS DP=483;GPV=1;SPV=0.035494;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:266:232,34:137,16:95,18
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
631 chr10 41896476 . C A 0 PASS DP=114;GPV=1;SPV=0.048087;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:64:41,7:24,6:17,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
632 chr10 41906794 . G A 0 PASS DP=172;GPV=1;SPV=0.010477;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:96:44,7:23,5:21,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
633 chr10 41908349 . G A 0 PASS DP=182;GPV=1;SPV=0.040619;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:106:90,15:40,8:50,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
634 chr10 41912211 . C G 0 PASS DP=359;GPV=1;SPV=0.029288;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:219:185,33:96,18:89,15
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
635 chr10 41914473 . G C 0 PASS DP=494;GPV=1;SPV=0.00070564;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:278:221,57:162,35:59,22
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
636 chr10 41916118 . G GTGGAA 0 PASS DP=52;GPV=1;SPV=0.023496;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:22,10:3,1:19,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
637 chr10 42070978 . G T 0 PASS DP=4375;GPV=1;SPV=0.046915;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:2656:2378,277:805,82:1573,195
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
638 chr10 42130126 . T C 0 PASS DP=485;GPV=1;SPV=0.0068565;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:244:205,39:98,20:107,19
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
639 chr10 42130231 . T C 0 PASS DP=535;GPV=1;SPV=0.022795;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:280:249,31:75,17:174,14
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
640 chr10 42130529 . T C 0 PASS DP=247;GPV=1;SPV=0.030266;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:142:117,25:38,12:79,13
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
641 chr10 42232204 . C T 0 PASS DP=190;GPV=1;SPV=0.042091;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:114:98,16:62,13:36,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
642 chr10 42257919 . T TG 0 PASS DP=135;GPV=1;SPV=0.036907;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:76:60,16:36,5:24,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
643 chr10 42336689 . C A 0 PASS DP=62;GPV=1;SPV=0.0051191;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:30,12:18,6:12,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
644 chr10 43933103 . CA C 0 PASS DP=41;GPV=1;SPV=0.011728;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:13,10:8,8:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
645 chr10 44351318 . C CTT 0 PASS DP=58;GPV=1;SPV=0.082275;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:31,5:9,4:22,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
646 chr10 44387704 . A ATAAATAAATAAATAAATATG 0 PASS DP=57;GPV=1;SPV=0.046798;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:26,9:9,5:17,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
647 chr10 45040366 . G GGACACAGAGTTAATAACTCATA 0 PASS DP=48;GPV=1;SPV=0.0086905;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:18,12:9,7:9,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
648 chr10 45040367 . T A 0 PASS DP=39;GPV=1;SPV=0.028152;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:15,12:7,7:8,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
649 chr10 46770659 . A AAACAAAACAAAAC 0 PASS DP=34;GPV=1;SPV=0.14282;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,7:9,6:9,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
650 chr10 46788092 . A G 0 PASS DP=70;GPV=1;SPV=0.031149;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:31,5:12,3:19,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
651 chr10 46790389 . A T 0 PASS DP=54;GPV=1;SPV=0.042981;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,7:8,6:10,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
652 chr10 47333220 . T C 0 PASS DP=53;GPV=1;SPV=0.00010136;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:15,11:7,7:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
653 chr10 47533218 . C CACAT 0 PASS DP=87;GPV=1;SPV=0.036306;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:38,7:26,2:12,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
654 chr10 47743936 . C G 0 PASS DP=38;GPV=1;SPV=0.05251;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:5,3:10,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
655 chr10 47925390 . G A 0 PASS DP=40;GPV=1;SPV=0.12269;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:14,4:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
656 chr10 47995880 . GT G 0 PASS DP=67;GPV=1;SPV=0.040006;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:38,8:24,1:14,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
657 chr10 48009476 . G A 0 PASS DP=63;GPV=1;SPV=0.0066407;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:19,12:14,9:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
658 chr10 48979576 . T A 0 PASS DP=69;GPV=1;SPV=0.059574;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:20,4:6,1:14,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
659 chr10 49148830 . A ATG 0 PASS DP=26;GPV=1;SPV=0.091304;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:6,3:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
660 chr10 50153979 . G A 0 PASS DP=28;GPV=1;SPV=0.021256;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:9,5:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
661 chr10 50278329 . GT G 0 PASS DP=27;GPV=1;SPV=0.01093;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:6,10:5,7:1,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
662 chr10 50776052 . G A 0 PASS DP=118;GPV=1;SPV=0.00090389;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:76:48,28:29,19:19,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
663 chr10 52274536 . C T 0 PASS DP=57;GPV=1;SPV=0.10359;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:12,3:17,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
664 chr10 53966068 . A C 0 PASS DP=57;GPV=1;SPV=0.036947;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,6:11,2:10,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
665 chr10 53978658 . T G 0 PASS DP=60;GPV=1;SPV=0.025213;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:12,6:8,2:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
666 chr10 54622852 . G A 0 PASS DP=22;GPV=1;SPV=0.00095261;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:11:2,9:2,7:0,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
667 chr10 55247892 . G GA 0 PASS DP=40;GPV=1;SPV=0.023277;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:13,9:8,7:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
668 chr10 57452880 . T A 0 PASS DP=50;GPV=1;SPV=0.0018707;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,9:9,4:9,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
669 chr10 58781647 . T A 0 PASS DP=69;GPV=1;SPV=9.7569e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:25,14:11,5:14,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
670 chr10 63097696 . A AT 0 PASS DP=28;GPV=1;SPV=0.1893;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:8,2:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
671 chr10 65373204 . A T 0 PASS DP=53;GPV=1;SPV=0.0033085;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:22,10:13,3:9,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
672 chr10 65653553 . C CAA 0 PASS DP=33;GPV=1;SPV=0.034533;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:5,12:4,9:1,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
673 chr10 65793818 . C T 0 PASS DP=86;GPV=1;SPV=6.8867e-06;SS=2;SSC=51;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:30,17:19,7:11,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
674 chr10 66036862 . ATTTT A 0 PASS DP=43;GPV=1;SPV=0.0091209;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,9:11,5:3,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
675 chr10 66082275 . G C 0 PASS DP=57;GPV=1;SPV=0.0037028;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:4,2:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
676 chr10 66745587 . CT C 0 PASS DP=26;GPV=1;SPV=0.11647;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:7,2:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
677 chr10 66829854 . T TTTGTTGTTGTTG 0 PASS DP=39;GPV=1;SPV=0.042236;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:9,8:3,3:6,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
678 chr10 68485798 . A ATT 0 PASS DP=43;GPV=1;SPV=0.0033833;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:17,12:10,7:7,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
679 chr10 68589662 . ATT A 0 PASS DP=26;GPV=1;SPV=0.049428;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,7:5,3:3,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
680 chr10 68929299 . CTCTCTCTCTCTCTCTT C 0 PASS DP=34;GPV=1;SPV=0.036101;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,5:2,1:11,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
681 chr10 69233935 . G C 0 PASS DP=29;GPV=1;SPV=0.014832;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:8,10:5,4:3,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
682 chr10 69251087 . CTTTTT C 0 PASS DP=24;GPV=1;SPV=0.048122;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,8:4,6:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
683 chr10 70133098 . AAGAGAGAGAG A 0 PASS DP=53;GPV=1;SPV=0.023137;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:15,10:11,6:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
684 chr10 70149547 . A ATTTTT 0 PASS DP=24;GPV=1;SPV=0.023079;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,5:2,4:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
685 chr10 71091725 . T C 0 PASS DP=30;GPV=1;SPV=0.040038;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:5,1:4,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
686 chr10 71420496 . GGTA G 0 PASS DP=24;GPV=1;SPV=0.027415;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,10:4,5:2,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
687 chr10 71910482 . CA C 0 PASS DP=41;GPV=1;SPV=0.037681;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:8,11:5,9:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
688 chr10 72421002 . C CAA 0 PASS DP=39;GPV=1;SPV=0.016565;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,7:10,6:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
689 chr10 72587464 . C CA 0 PASS DP=42;GPV=1;SPV=0.015385;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:13,10:9,9:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
690 chr10 73736975 . CA C 0 PASS DP=28;GPV=1;SPV=0.015866;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,9:5,7:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
691 chr10 74694147 . A ATT 0 PASS DP=35;GPV=1;SPV=0.01204;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:7,14:6,6:1,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
692 chr10 74733234 . G GC 0 PASS DP=49;GPV=1;SPV=0.042069;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:22,10:11,2:11,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
693 chr10 75330233 . A G 0 PASS DP=60;GPV=1;SPV=1.9498e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:18,15:9,5:9,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
694 chr10 76485873 . G A 0 PASS DP=65;GPV=1;SPV=0.00030588;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:26,15:18,9:8,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
695 chr10 76562367 . C CAGAGAGAG 0 PASS DP=52;GPV=1;SPV=0.011519;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:21,12:16,10:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
696 chr10 76617883 . T A 0 PASS DP=28;GPV=1;SPV=0.10288;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,6:11,2:3,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
697 chr10 77445367 . C G 0 PASS DP=55;GPV=1;SPV=0.20342;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:18,4:7,3:11,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
698 chr10 77937874 . A AT 0 PASS DP=39;GPV=1;SPV=0.011316;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,9:9,7:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
699 chr10 78030446 . CTA C 0 PASS DP=30;GPV=1;SPV=0.024751;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:10,5:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
700 chr10 78924630 . T C 0 PASS DP=67;GPV=1;SPV=3.3144e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:24,19:8,7:16,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
701 chr10 79424206 . T G 0 PASS DP=55;GPV=1;SPV=0.0010783;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:21,11:11,6:10,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
702 chr10 80566090 . CAAAAA C 0 PASS DP=20;GPV=1;SPV=0.021672;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,5:2,4:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
703 chr10 82094896 . G C 0 PASS DP=70;GPV=1;SPV=7.5053e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:24,13:9,8:15,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
704 chr10 82713119 . CAA C 0 PASS DP=25;GPV=1;SPV=0.077477;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,6:4,5:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
705 chr10 82892679 . A C 0 PASS DP=48;GPV=1;SPV=0.16171;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:14,1:13,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
706 chr10 83829207 . G C 0 PASS DP=75;GPV=1;SPV=4.2772e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:25,13:12,9:13,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
707 chr10 85225562 . G A 0 PASS DP=53;GPV=1;SPV=1.9493e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:13,12:6,7:7,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
708 chr10 85810124 . T C 0 PASS DP=41;GPV=1;SPV=0.20218;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:6,1:18,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
709 chr10 87343048 . G GTCGCC 0 PASS DP=109;GPV=1;SPV=0.019585;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:44,14:29,7:15,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
710 chr10 87349109 . A T 0 PASS DP=79;GPV=1;SPV=0.00021594;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:30,12:16,7:14,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
711 chr10 87592124 . G A 0 PASS DP=52;GPV=1;SPV=0.11622;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:14,2:13,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
712 chr10 87853117 . A AT 0 PASS DP=29;GPV=1;SPV=0.0035197;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:8,9:5,4:3,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
713 chr10 88672625 . AACACACAC A 0 PASS DP=29;GPV=1;SPV=0.076651;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:9,3:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
714 chr10 89196270 . C CAAAAAAAA 0 PASS DP=47;GPV=1;SPV=0.20218;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:24,4:15,3:9,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
715 chr10 89534644 . C CA 0 PASS DP=31;GPV=1;SPV=0.027415;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,7:4,6:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
716 chr10 90331440 . C CT 0 PASS DP=22;GPV=1;SPV=0.051084;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,5:4,4:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
717 chr10 92015428 . C G 0 PASS DP=69;GPV=1;SPV=0.00031133;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:27,13:7,10:20,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
718 chr10 92295315 . C T 0 PASS DP=21;GPV=1;SPV=0.047619;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:12:1,5:0,4:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
719 chr10 92439486 . ACTCTCTCT A 0 PASS DP=34;GPV=1;SPV=0.1839;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,6:5,1:7,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
720 chr10 92523701 . T TA 0 PASS DP=55;GPV=1;SPV=0.033527;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:20,10:9,5:11,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
721 chr10 93923837 . C CTTT 0 PASS DP=28;GPV=1;SPV=0.13025;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,5:8,3:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
722 chr10 93994065 . A G 0 PASS DP=68;GPV=1;SPV=0.071318;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:20,4:15,2:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
723 chr10 94465670 . A ATATGTGTGTG 0 PASS DP=57;GPV=1;SPV=0.012883;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:22,11:13,4:9,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
724 chr10 94530160 . A C 0 PASS DP=66;GPV=1;SPV=0.025587;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:31,6:15,4:16,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
725 chr10 96802771 . GTTTC G 0 PASS DP=68;GPV=1;SPV=0.00093161;SS=2;SSC=30;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:28,12:6,6:22,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
726 chr10 96802886 . T TTTCCTTCCTTCCTTCCTTCCTTCCTTCC 0 PASS DP=32;GPV=1;SPV=0.1088;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,5:4,1:11,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
727 chr10 97102439 . G A 0 PASS DP=24;GPV=1;SPV=0.15385;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,4:3,1:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
728 chr10 97626398 . C A 0 PASS DP=57;GPV=1;SPV=0.0098833;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:35:3,9:0,6:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
729 chr10 97642838 . CCTTCCTTCCTTCCTTT C 0 PASS DP=46;GPV=1;SPV=0.077519;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:5,1:16,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
730 chr10 97919747 . A AG 0 PASS DP=39;GPV=1;SPV=0.017286;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:14,11:7,7:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
731 chr10 97919771 . C CTTTTTTT 0 PASS DP=37;GPV=1;SPV=0.0052707;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,8:6,5:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
732 chr10 98265338 . T C 0 PASS DP=37;GPV=1;SPV=0.0065689;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,9:9,4:5,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
733 chr10 98696292 . TA T 0 PASS DP=28;GPV=1;SPV=0.044444;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,5:8,3:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
734 chr10 100242673 . CAA C 0 PASS DP=43;GPV=1;SPV=0.017042;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,10:8,5:8,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
735 chr10 100651274 . CTCCCACCACCTCCACTAG C 0 PASS DP=21;GPV=1;SPV=0.021053;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:0,0:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
736 chr10 100728575 . G A 0 PASS DP=57;GPV=1;SPV=0.001881;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,8:10,4:10,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
737 chr10 101277345 . C T 0 PASS DP=67;GPV=1;SPV=0.032693;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:33,6:22,5:11,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
738 chr10 102543991 . C T 0 PASS DP=45;GPV=1;SPV=5.0407e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:12,18:9,9:3,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
739 chr10 102571521 . A C 0 PASS DP=64;GPV=1;SPV=0.023972;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:20,9:12,5:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
740 chr10 103265239 . G A 0 PASS DP=41;GPV=1;SPV=0.046615;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:15,8:12,1:3,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
741 chr10 103482998 . A AG 0 PASS DP=29;GPV=1;SPV=0.091949;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,6:6,3:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
742 chr10 104458568 . GTGTA G 0 PASS DP=33;GPV=1;SPV=0.066185;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,4:5,2:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
743 chr10 104749226 . GGT G 0 PASS DP=40;GPV=1;SPV=0.050519;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,8:7,4:13,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
744 chr10 105856310 . T TATATGTA 0 PASS DP=24;GPV=1;SPV=0.17128;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:4,3:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
745 chr10 107262183 . C CA 0 PASS DP=65;GPV=1;SPV=0.019365;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:27,15:14,9:13,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
746 chr10 107528169 . A ATT 0 PASS DP=38;GPV=1;SPV=0.010716;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:9,15:3,6:6,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
747 chr10 107535345 . G A 0 PASS DP=70;GPV=1;SPV=0.08973;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:39,5:19,3:20,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
748 chr10 108314869 . G A 0 PASS DP=22;GPV=1;SPV=0.010394;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:4,8:1,6:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
749 chr10 108359682 . A ATT 0 PASS DP=35;GPV=1;SPV=0.036825;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,8:6,6:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
750 chr10 109242766 . C T 0 PASS DP=18;GPV=1;SPV=0.10294;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:6,3:1,2:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
751 chr10 111556874 . T C 0 PASS DP=66;GPV=1;SPV=0.00036768;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:27,15:14,8:13,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
752 chr10 111873917 . G C 0 PASS DP=62;GPV=1;SPV=0.0051191;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:30,12:14,5:16,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
753 chr10 112743571 . G A 0 PASS DP=58;GPV=1;SPV=0.0036217;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:24,9:14,7:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
754 chr10 112965619 . GTGTGTGTATA G 0 PASS DP=48;GPV=1;SPV=0.025787;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,8:8,2:7,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
755 chr10 113539025 . A ACAAG 0 PASS DP=65;GPV=1;SPV=0.09755;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:25,3:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
756 chr10 114583404 . AACACACACAC A 0 PASS DP=33;GPV=1;SPV=0.2164;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:16,3:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
757 chr10 114884964 . T A 0 PASS DP=55;GPV=1;SPV=0.00045655;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:19,11:8,5:11,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
758 chr10 115446841 . AATTGTGGATCTCCG A 0 PASS DP=72;GPV=1;SPV=0.00011455;SS=2;SSC=39;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:26,13:17,8:9,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
759 chr10 115583563 . A G 0 PASS DP=29;GPV=1;SPV=0.0048547;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,9:6,8:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
760 chr10 115632864 . T TTTTTATTTTATTTTATTTTATTTTA 0 PASS DP=39;GPV=1;SPV=0.047124;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:8,2:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
761 chr10 115852033 . G T 0 PASS DP=58;GPV=1;SPV=0.0094722;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:26,8:16,4:10,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
762 chr10 120996872 . C T 0 PASS DP=65;GPV=1;SPV=0.0027508;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:25,8:13,3:12,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
763 chr10 121177924 . CTA C 0 PASS DP=36;GPV=1;SPV=0.12418;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:9,1:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
764 chr10 122136543 . G GTATATATATA 0 PASS DP=41;GPV=1;SPV=0.001638;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:8,6:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
765 chr10 122176073 . TTCTCTC T 0 PASS DP=32;GPV=1;SPV=0.18814;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,4:6,3:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
766 chr10 122893058 . C T 0 PASS DP=51;GPV=1;SPV=0.17128;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:12,4:9,1:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
767 chr10 123068651 . T TAC 0 PASS DP=61;GPV=1;SPV=0.0073135;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:25,12:10,5:15,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
768 chr10 123068667 . T C 0 PASS DP=48;GPV=1;SPV=0.016188;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,11:8,5:8,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
769 chr10 124563313 . C CTT 0 PASS DP=37;GPV=1;SPV=0.054945;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:3,8:2,7:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
770 chr10 125098657 . GGAGA G 0 PASS DP=29;GPV=1;SPV=0.035714;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:2,4:2,1:0,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
771 chr10 125098740 . G C 0 PASS DP=56;GPV=1;SPV=0.055746;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:15,1:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
772 chr10 125636372 . A AT 0 PASS DP=59;GPV=1;SPV=0.046407;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:7,11:5,7:2,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
773 chr10 125894836 . C T 0 PASS DP=215;GPV=1;SPV=0.010391;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:104:92,12:51,8:41,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
774 chr10 125900074 . A T 0 PASS DP=108;GPV=1;SPV=0.02342;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:45,7:23,6:22,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
775 chr10 126002763 . C CT 0 PASS DP=41;GPV=1;SPV=0.036102;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,7:7,2:4,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
776 chr10 126905003 . G A 0 PASS DP=74;GPV=1;SPV=1.6575e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:27,20:17,7:10,13
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
777 chr10 128738180 . T A 0 PASS DP=73;GPV=1;SPV=0.00033815;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:27,11:17,5:10,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
778 chr10 129560954 . A AGT 0 PASS DP=47;GPV=1;SPV=0.0030632;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:7,12:4,10:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
779 chr10 129629632 . C A 0 PASS DP=63;GPV=1;SPV=0.010836;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:25,6:9,5:16,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
780 chr10 131150240 . C CCCCCACGGTTCTATGCACACCAGTGATCTGGGCATAGCA 0 PASS DP=20;GPV=1;SPV=0.045455;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:2,4:1,3:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
781 chr10 131777963 . T A 0 PASS DP=44;GPV=1;SPV=0.010707;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:8,3:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
782 chr10 132237175 . TGACTGTGCTCCCTG T 0 PASS DP=40;GPV=1;SPV=0.080744;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:12,3:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
783 chr10 132824932 . G T 0 PASS DP=36;GPV=1;SPV=0.18627;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:18,3:8,1:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
784 chr10 132858997 . G A 0 PASS DP=75;GPV=1;SPV=0.0021771;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:31,9:13,5:18,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
785 chr10 133403341 . T C 0 PASS DP=30;GPV=1;SPV=0.020875;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,9:8,7:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
786 chr10 133536297 . T C 0 PASS DP=57;GPV=1;SPV=0.019608;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:25,11:15,4:10,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
787 chr10 133650165 . T G 0 PASS DP=80;GPV=1;SPV=0.06388;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:48,7:16,5:32,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
788 chr10 133765527 . G A 0 PASS DP=52;GPV=1;SPV=0.12491;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:30,5:18,3:12,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
789 chr11 133520 . G A 0 PASS DP=86;GPV=1;SPV=0.046808;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:44,9:21,8:23,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
790 chr11 148063 . A G 0 PASS DP=60;GPV=1;SPV=0.0074853;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:20,11:10,4:10,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
791 chr11 192716 . G C 0 PASS DP=37;GPV=1;SPV=0.032095;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,6:9,1:7,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
792 chr11 2132055 . G GTA 0 PASS DP=41;GPV=1;SPV=0.065833;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,6:12,1:9,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
793 chr11 3504395 . ATTT A 0 PASS DP=57;GPV=1;SPV=0.00020889;SS=2;SSC=36;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:17,23:8,17:9,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
794 chr11 3754941 . C CA 0 PASS DP=36;GPV=1;SPV=0.20787;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:20,6:11,5:9,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
795 chr11 4349920 . C T 0 PASS DP=43;GPV=1;SPV=0.020884;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,9:5,4:11,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
796 chr11 6214034 . GA G 0 PASS DP=24;GPV=1;SPV=0.12846;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:10,4:1,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
797 chr11 7427021 . T C 0 PASS DP=54;GPV=1;SPV=0.0092391;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:19,14:8,5:11,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
798 chr11 8915356 . TTC T 0 PASS DP=32;GPV=1;SPV=0.0737;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,6:5,1:10,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
799 chr11 8952275 . C T 0 PASS DP=47;GPV=1;SPV=0.14184;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:22,3:10,1:12,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
800 chr11 10250636 . T G 0 PASS DP=70;GPV=1;SPV=0.00010692;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:27,16:13,10:14,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
801 chr11 10336617 . TCGCCACACTGACTTC T 0 PASS DP=53;GPV=1;SPV=0.0033085;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:22,10:11,5:11,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
802 chr11 11110047 . T C 0 PASS DP=36;GPV=1;SPV=0.13561;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,4:9,3:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
803 chr11 11560150 . A T 0 PASS DP=24;GPV=1;SPV=0.006865;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,6:3,4:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
804 chr11 12168964 . GAAAA G 0 PASS DP=41;GPV=1;SPV=0.11304;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:10,4:5,3:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
805 chr11 12484504 . G GGTGTGT 0 PASS DP=45;GPV=1;SPV=0.0037237;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:9,10:5,6:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
806 chr11 12606499 . C CTATATATA 0 PASS DP=31;GPV=1;SPV=0.091388;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,6:8,5:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
807 chr11 12870983 . A G 0 PASS DP=72;GPV=1;SPV=7.7661e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:26,14:14,12:12,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
808 chr11 13461930 . C CT 0 PASS DP=32;GPV=1;SPV=0.045822;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,9:9,8:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
809 chr11 14415903 . TAAAA T 0 PASS DP=36;GPV=1;SPV=0.13094;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,6:7,4:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
810 chr11 15116804 . C T 0 PASS DP=30;GPV=1;SPV=0.11166;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:2,1:12,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
811 chr11 15207646 . C G 0 PASS DP=65;GPV=1;SPV=0.0026408;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:28,10:9,5:19,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
812 chr11 16674189 . C CAAAAA 0 PASS DP=30;GPV=1;SPV=0.23663;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,4:9,3:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
813 chr11 17051564 . G C 0 PASS DP=51;GPV=1;SPV=0.082922;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:18,6:12,2:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
814 chr11 17180515 . C CA 0 PASS DP=64;GPV=1;SPV=0.043132;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:15,1:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
815 chr11 17470732 . C G 0 PASS DP=60;GPV=1;SPV=0.0011187;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:19,20:11,8:8,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
816 chr11 19130795 . C T 0 PASS DP=47;GPV=1;SPV=0.0016553;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:18,12:12,6:6,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
817 chr11 19162412 . G A 0 PASS DP=49;GPV=1;SPV=0.00020442;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:13,17:6,6:7,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
818 chr11 20246180 . A G 0 PASS DP=68;GPV=1;SPV=0.00078492;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:27,11:12,5:15,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
819 chr11 20323826 . G A 0 PASS DP=48;GPV=1;SPV=0.048573;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,6:11,3:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
820 chr11 20525459 . T C 0 PASS DP=42;GPV=1;SPV=0.094902;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:12,1:10,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
821 chr11 20895504 . C CTTT 0 PASS DP=33;GPV=1;SPV=0.00014247;SS=2;SSC=38;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:4,10:3,9:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
822 chr11 21805391 . TATAAAA T 0 PASS DP=28;GPV=1;SPV=0.0077399;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:4,6:0,3:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
823 chr11 22338812 . GGT G 0 PASS DP=52;GPV=1;SPV=0.023047;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:23,13:11,8:12,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
824 chr11 24594750 . CTT C 0 PASS DP=30;GPV=1;SPV=0.27607;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:10,2:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
825 chr11 24796491 . C CTG 0 PASS DP=46;GPV=1;SPV=0.0082728;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,10:9,5:4,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
826 chr11 25075242 . A AGAATTTAGAATTAGGTGGTT 0 PASS DP=71;GPV=1;SPV=0.00040909;SS=2;SSC=33;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:22,9:10,3:12,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
827 chr11 25075245 . A G 0 PASS DP=66;GPV=1;SPV=0.0014004;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:24,9:12,3:12,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
828 chr11 25413650 . G GA 0 PASS DP=31;GPV=1;SPV=0.045822;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,10:7,6:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
829 chr11 25422012 . C G 0 PASS DP=67;GPV=1;SPV=2.7081e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:22,15:10,9:12,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
830 chr11 25526201 . GAACCCT G 0 PASS DP=60;GPV=1;SPV=0.0027902;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:20,15:9,6:11,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
831 chr11 25939239 . AC A 0 PASS DP=50;GPV=1;SPV=0.17857;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:2,3:1,1:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
832 chr11 27280562 . T C 0 PASS DP=66;GPV=1;SPV=0.030384;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:32,6:24,4:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
833 chr11 29243445 . G T 0 PASS DP=71;GPV=1;SPV=0.002428;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:31,10:17,7:14,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
834 chr11 29589997 . A G 0 PASS DP=81;GPV=1;SPV=0.0064655;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:34,7:17,3:17,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
835 chr11 29850687 . G T 0 PASS DP=59;GPV=1;SPV=0.0026395;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:22,8:12,4:10,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
836 chr11 29943767 . G C 0 PASS DP=67;GPV=1;SPV=1.4224e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:20,14:14,7:6,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
837 chr11 30215486 . A AATAT 0 PASS DP=43;GPV=1;SPV=0.0058369;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,10:6,9:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
838 chr11 31488181 . G GA 0 PASS DP=55;GPV=1;SPV=2.2013e-05;SS=2;SSC=46;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:14,12:7,7:7,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
839 chr11 32685005 . G C 0 PASS DP=73;GPV=1;SPV=0.00096973;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:27,9:8,3:19,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
840 chr11 32755691 . A ATG 0 PASS DP=29;GPV=1;SPV=0.0099605;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,4:3,1:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
841 chr11 33615191 . G T 0 PASS DP=64;GPV=1;SPV=7.9328e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:22,14:10,8:12,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
842 chr11 35244742 . A T 0 PASS DP=59;GPV=1;SPV=0.00019519;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:19,11:8,2:11,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
843 chr11 35466726 . C CAAA 0 PASS DP=36;GPV=1;SPV=0.064336;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,7:11,6:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
844 chr11 39502414 . T G 0 PASS DP=59;GPV=1;SPV=0.0055442;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:27,10:10,8:17,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
845 chr11 40042470 . G GATGT 0 PASS DP=52;GPV=1;SPV=0.0079397;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,9:8,4:10,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
846 chr11 40739007 . TTG T 0 PASS DP=60;GPV=1;SPV=0.0019977;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:23,18:12,7:11,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
847 chr11 40739012 . T C 0 PASS DP=62;GPV=1;SPV=0.02308;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:26,14:13,4:13,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
848 chr11 41314601 . A C 0 PASS DP=66;GPV=1;SPV=0.0014171;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:25,9:12,4:13,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
849 chr11 41754571 . A T 0 PASS DP=66;GPV=1;SPV=0.000113;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:23,13:13,10:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
850 chr11 42281746 . G A 0 PASS DP=64;GPV=1;SPV=0.00080797;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:25,11:14,6:11,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
851 chr11 42682166 . GTA G 0 PASS DP=58;GPV=1;SPV=0.1041;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:32,5:20,2:12,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
852 chr11 42791649 . C A 0 PASS DP=50;GPV=1;SPV=0.04277;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:26,7:11,6:15,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
853 chr11 43588608 . AG A 0 PASS DP=50;GPV=1;SPV=0.25578;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:20,1:12,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
854 chr11 43668265 . G T 0 PASS DP=55;GPV=1;SPV=0.00032166;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:19,12:14,6:5,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
855 chr11 43673492 . C CTT 0 PASS DP=27;GPV=1;SPV=0.096154;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:4,7:2,4:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
856 chr11 43873897 . C G 0 PASS DP=60;GPV=1;SPV=0.00059631;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:23,12:14,7:9,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
857 chr11 43999488 . C G 0 PASS DP=37;GPV=1;SPV=0.0029195;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:13,13:9,5:4,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
858 chr11 45990712 . G GT 0 PASS DP=33;GPV=1;SPV=0.045822;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,9:9,6:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
859 chr11 47421249 . C CA 0 PASS DP=25;GPV=1;SPV=0.10217;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,4:4,3:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
860 chr11 48268292 . CTTA C 0 PASS DP=44;GPV=1;SPV=0.015172;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:7,6:3,2:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
861 chr11 49096715 . GTATATA G 0 PASS DP=34;GPV=1;SPV=0.010876;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,6:6,4:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
862 chr11 49096717 . A G 0 PASS DP=35;GPV=1;SPV=0.04469;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:6,6:2,4:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
863 chr11 50212999 . CTT C 0 PASS DP=31;GPV=1;SPV=0.044272;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:7,7:7,6:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
864 chr11 50258764 . C A 0 PASS DP=45;GPV=1;SPV=0.00043913;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:14,11:11,5:3,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
865 chr11 50687286 . T G 0 PASS DP=60;GPV=1;SPV=0.048707;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:14,2:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
866 chr11 51203809 . G C 0 PASS DP=155;GPV=1;SPV=0.028967;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:94:79,15:3,1:76,14
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
867 chr11 51268122 . C T 0 PASS DP=78;GPV=1;SPV=0.031805;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:37,14:12,5:25,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
868 chr11 51584839 . G T 0 PASS DP=30;GPV=1;SPV=0.21839;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:7,1:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
869 chr11 51918829 . T G 0 PASS DP=56;GPV=1;SPV=0.20097;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:34,4:34,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
870 chr11 52454893 . C A 0 PASS DP=92;GPV=1;SPV=0.022359;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:45,10:29,8:16,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
871 chr11 52688785 . C T 0 PASS DP=60;GPV=1;SPV=0.015078;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:24,10:12,7:12,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
872 chr11 53273209 . G A 0 PASS DP=58;GPV=1;SPV=0.031574;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:29,7:17,5:12,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
873 chr11 53713343 . A T 0 PASS DP=99;GPV=1;SPV=0.036103;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:45,10:27,6:18,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
874 chr11 54346041 . G A 0 PASS DP=125;GPV=1;SPV=0.039819;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:70:58,12:8,2:50,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
875 chr11 54359415 . T C 0 PASS DP=109;GPV=1;SPV=0.030326;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:70:59,11:32,7:27,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
876 chr11 54373339 . A T 0 PASS DP=73;GPV=1;SPV=0.047029;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:35,5:18,2:17,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
877 chr11 54527614 . A G 0 PASS DP=105;GPV=1;SPV=0.023165;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:64:51,13:28,9:23,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
878 chr11 54528337 . G A 0 PASS DP=146;GPV=1;SPV=0.045252;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:86:69,17:27,10:42,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
879 chr11 54716696 . A C 0 PASS DP=73;GPV=1;SPV=3.7006e-08;SS=2;SSC=74;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:17,20:11,11:6,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
880 chr11 54930773 . A T 0 PASS DP=103;GPV=1;SPV=0.030304;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:46,13:20,8:26,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
881 chr11 57403449 . A G 0 PASS DP=29;GPV=1;SPV=0.018691;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,6:5,3:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
882 chr11 57716572 . A ACCC 0 PASS DP=29;GPV=1;SPV=0.16319;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:7,1:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
883 chr11 58053630 . A T 0 PASS DP=23;GPV=1;SPV=0.097744;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,4:7,2:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
884 chr11 59153703 . A ATTTTTT 0 PASS DP=41;GPV=1;SPV=0.027664;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,10:11,6:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
885 chr11 59570881 . C CA 0 PASS DP=30;GPV=1;SPV=0.026877;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,7:8,6:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
886 chr11 59632729 . C CTATA 0 PASS DP=20;GPV=1;SPV=0.10217;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:3,1:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
887 chr11 59729119 . ACTTCCGTGTGGCCACCATCACCATCCCCTTC A 0 PASS DP=78;GPV=1;SPV=0.027483;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:38,6:21,4:17,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
888 chr11 61199053 . G A 0 PASS DP=75;GPV=1;SPV=0.00020157;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:29,13:17,9:12,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
889 chr11 61538352 . A G 0 PASS DP=53;GPV=1;SPV=0.0025067;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:18,12:11,7:7,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
890 chr11 61939559 . G T 0 PASS DP=49;GPV=1;SPV=0.0015209;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,9:12,7:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
891 chr11 62951703 . ATG A 0 PASS DP=21;GPV=1;SPV=0.0024326;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:4,8:1,2:3,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
892 chr11 62951735 . G A 0 PASS DP=17;GPV=1;SPV=0.0067873;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:3,6:3,2:0,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
893 chr11 63062558 . C CTTTTTTTT 0 PASS DP=19;GPV=1;SPV=0.0030303;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:0,4:0,2:0,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
894 chr11 64444240 . TTTTC T 0 PASS DP=31;GPV=1;SPV=0.038078;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,7:4,4:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
895 chr11 64549871 . C CAAAAA 0 PASS DP=30;GPV=1;SPV=0.053922;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,5:3,4:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
896 chr11 64595844 . G A 0 PASS DP=27;GPV=1;SPV=0.057037;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:6,3:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
897 chr11 64929914 . T G 0 PASS DP=39;GPV=1;SPV=0.032593;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:19,11:6,7:13,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
898 chr11 65250286 . G GAGAGAAAGAAAGAA 0 PASS DP=40;GPV=1;SPV=0.086845;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,4:7,3:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
899 chr11 65637377 . C CT 0 PASS DP=29;GPV=1;SPV=0.0036482;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:6,9:3,5:3,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
900 chr11 65732470 . C CAA 0 PASS DP=37;GPV=1;SPV=0.060413;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,5:12,4:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
901 chr11 65781006 . G T 0 PASS DP=75;GPV=1;SPV=0.0011112;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:34,13:14,6:20,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
902 chr11 68421686 . CTG C 0 PASS DP=40;GPV=1;SPV=0.0035533;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:12,14:6,12:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
903 chr11 68511463 . A AGTGTGTGTGTGTGTGTGTGTGT 0 PASS DP=48;GPV=1;SPV=0.024823;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:10,3:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
904 chr11 69009315 . A G 0 PASS DP=69;GPV=1;SPV=1.0256e-06;SS=2;SSC=59;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:19,18:8,9:11,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
905 chr11 69020915 . C T 0 PASS DP=71;GPV=1;SPV=0.00023464;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:25,11:10,4:15,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
906 chr11 69020916 . G GC 0 PASS DP=68;GPV=1;SPV=0.00027215;SS=2;SSC=35;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:24,11:10,4:14,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
907 chr11 69020917 . A C 0 PASS DP=68;GPV=1;SPV=0.000451;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:24,10:10,4:14,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
908 chr11 69020918 . G T 0 PASS DP=67;GPV=1;SPV=0.00065599;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:23,9:9,4:14,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
909 chr11 70740115 . C G 0 PASS DP=58;GPV=1;SPV=0.020178;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:21,10:9,8:12,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
910 chr11 71730993 . A G 0 PASS DP=74;GPV=1;SPV=0.1063;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:43,5:23,1:20,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
911 chr11 71886995 . C G 0 PASS DP=58;GPV=1;SPV=0.00084999;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:21,10:14,6:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
912 chr11 71982335 . C CAAAAA 0 PASS DP=28;GPV=1;SPV=0.0041408;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:8,12:6,10:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
913 chr11 72150044 . C CAA 0 PASS DP=21;GPV=1;SPV=0.001998;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:12:0,9:0,7:0,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
914 chr11 72258983 . T C 0 PASS DP=23;GPV=1;SPV=0.15415;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:5,1:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
915 chr11 72346999 . A C 0 PASS DP=62;GPV=1;SPV=0.10559;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:16,1:16,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
916 chr11 73131931 . C A 0 PASS DP=69;GPV=1;SPV=0.0010794;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:31,14:15,8:16,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
917 chr11 76174508 . TCATC T 0 PASS DP=50;GPV=1;SPV=0.0036197;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,10:7,5:9,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
918 chr11 76303861 . G T 0 PASS DP=69;GPV=1;SPV=7.061e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:26,17:12,5:14,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
919 chr11 77057058 . T A 0 PASS DP=67;GPV=1;SPV=0.0001506;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:22,11:12,8:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
920 chr11 77397245 . A G 0 PASS DP=62;GPV=1;SPV=0.0025855;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:25,9:10,3:15,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
921 chr11 77479602 . CT C 0 PASS DP=27;GPV=1;SPV=0.20979;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,4:5,3:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
922 chr11 78108608 . A G 0 PASS DP=79;GPV=1;SPV=1.594e-06;SS=2;SSC=57;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:25,19:7,11:18,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
923 chr11 79324390 . TA T 0 PASS DP=68;GPV=1;SPV=0.017796;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:30,6:15,3:15,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
924 chr11 79509907 . CA C 0 PASS DP=36;GPV=1;SPV=0.037466;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:9,6:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
925 chr11 80100384 . T C 0 PASS DP=63;GPV=1;SPV=4.4794e-06;SS=2;SSC=53;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:18,17:8,8:10,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
926 chr11 81523077 . T C 0 PASS DP=48;GPV=1;SPV=0.057396;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,5:14,3:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
927 chr11 83508403 . A ATTTTTT 0 PASS DP=36;GPV=1;SPV=0.022727;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,5:7,3:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
928 chr11 83510830 . G GTTT 0 PASS DP=22;GPV=1;SPV=0.18132;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,4:3,2:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
929 chr11 85325809 . T C 0 PASS DP=36;GPV=1;SPV=0.12418;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:8,2:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
930 chr11 85536214 . CA C 0 PASS DP=33;GPV=1;SPV=0.068436;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,5:7,4:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
931 chr11 88556319 . C CT 0 PASS DP=33;GPV=1;SPV=0.11096;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,5:14,3:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
932 chr11 89210366 . T C 0 PASS DP=46;GPV=1;SPV=0.014776;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:18,12:9,7:9,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
933 chr11 89210381 . TGAAATAAAGTAA T 0 PASS DP=41;GPV=1;SPV=0.032072;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,9:7,5:9,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
934 chr11 89262873 . C A 0 PASS DP=22;GPV=1;SPV=0.27273;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:4,2:0,0:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
935 chr11 89935310 . AT A 0 PASS DP=63;GPV=1;SPV=0.003711;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,9:5,5:12,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
936 chr11 91801131 . T A 0 PASS DP=49;GPV=1;SPV=0.0035851;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:17,18:5,10:12,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
937 chr11 93346145 . G T 0 PASS DP=70;GPV=1;SPV=0.0015381;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:32,13:18,7:14,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
938 chr11 93452906 . G C 0 PASS DP=65;GPV=1;SPV=6.2649e-06;SS=2;SSC=52;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:19,16:7,7:12,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
939 chr11 94238696 . G A 0 PASS DP=265;GPV=1;SPV=0.039739;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:158:130,28:70,11:60,17
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
940 chr11 95318308 . A G 0 PASS DP=58;GPV=1;SPV=2.6145e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:17,14:8,5:9,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
941 chr11 95462565 . C CT 0 PASS DP=29;GPV=1;SPV=0.17436;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,4:3,1:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
942 chr11 95724559 . G C 0 PASS DP=66;GPV=1;SPV=0.0012048;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:26,10:15,6:11,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
943 chr11 95899636 . T TAAAA 0 PASS DP=42;GPV=1;SPV=0.044118;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:2,12:0,9:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
944 chr11 97605010 . C T 0 PASS DP=67;GPV=1;SPV=2.3706e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:21,14:8,6:13,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
945 chr11 97800296 . C A 0 PASS DP=47;GPV=1;SPV=0.00095953;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,9:7,4:8,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
946 chr11 99547003 . C CT 0 PASS DP=42;GPV=1;SPV=0.02002;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,9:6,8:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
947 chr11 100579989 . T C 0 PASS DP=60;GPV=1;SPV=0.0009678;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:21,9:13,5:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
948 chr11 100636542 . C CA 0 PASS DP=35;GPV=1;SPV=0.01236;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:13,10:10,7:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
949 chr11 100796768 . C CT 0 PASS DP=33;GPV=1;SPV=0.021189;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,9:13,7:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
950 chr11 101085525 . T TAAA 0 PASS DP=28;GPV=1;SPV=0.068111;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:7,7:2,5:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
951 chr11 101548588 . A G 0 PASS DP=47;GPV=1;SPV=0.0019763;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:14,21:4,13:10,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
952 chr11 101626454 . G A 0 PASS DP=55;GPV=1;SPV=0.0025527;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,8:11,4:9,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
953 chr11 102490405 . C CAAAAAAAA 0 PASS DP=43;GPV=1;SPV=0.014223;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,6:7,5:9,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
954 chr11 103526491 . ATTTTTTTTTTTTTTTTTTTTTT A 0 PASS DP=25;GPV=1;SPV=0.07913;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:8,2:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
955 chr11 103627150 . CA C 0 PASS DP=36;GPV=1;SPV=0.12981;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:11,7:5,5:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
956 chr11 103985078 . TATTTATTTAATATATTATATATTA T 0 PASS DP=47;GPV=1;SPV=0.14555;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,4:12,3:13,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
957 chr11 104675226 . C T 0 PASS DP=62;GPV=1;SPV=0.0023332;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:23,8:10,1:13,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
958 chr11 107859582 . T TAA 0 PASS DP=34;GPV=1;SPV=0.14626;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:11,2:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
959 chr11 107986890 . C A 0 PASS DP=59;GPV=1;SPV=7.2622e-07;SS=2;SSC=61;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:12,14:9,7:3,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
960 chr11 108190312 . CAAA C 0 PASS DP=34;GPV=1;SPV=0.044851;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:8,8:6,7:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
961 chr11 108573200 . A G 0 PASS DP=50;GPV=1;SPV=0.25578;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:25,2:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
962 chr11 109502297 . T TGG 0 PASS DP=42;GPV=1;SPV=0.019439;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,6:6,2:10,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
963 chr11 110212787 . G C 0 PASS DP=64;GPV=1;SPV=0.061686;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:37,7:29,3:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
964 chr11 112138696 . G GT 0 PASS DP=33;GPV=1;SPV=0.020047;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:10,9:9,7:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
965 chr11 112258281 . CT C 0 PASS DP=25;GPV=1;SPV=0.013387;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,7:5,5:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
966 chr11 112272994 . CTTTCTTTCTTTCTTTCTTTCTT C 0 PASS DP=35;GPV=1;SPV=0.031556;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:9,8:1,4:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
967 chr11 112359680 . C CTT 0 PASS DP=22;GPV=1;SPV=0.047386;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:3,10:1,7:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
968 chr11 114890146 . C T 0 PASS DP=62;GPV=1;SPV=1.4853e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:19,16:9,10:10,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
969 chr11 115738577 . C A 0 PASS DP=58;GPV=1;SPV=0.13884;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:15,1:17,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
970 chr11 116128030 . G C 0 PASS DP=62;GPV=1;SPV=0.0024076;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,7:7,4:14,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
971 chr11 116815591 . TAAAA T 0 PASS DP=31;GPV=1;SPV=0.13684;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,4:6,2:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
972 chr11 119066564 . A C 0 PASS DP=49;GPV=1;SPV=0.049732;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:26,7:12,2:14,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
973 chr11 119441391 . G A 0 PASS DP=70;GPV=1;SPV=8.8917e-09;SS=2;SSC=80;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:13,18:6,10:7,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
974 chr11 121344692 . G A 0 PASS DP=45;GPV=1;SPV=0.0075968;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:16,16:5,8:11,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
975 chr11 121347807 . G A 0 PASS DP=43;GPV=1;SPV=0.0017048;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,10:11,5:4,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
976 chr11 121474639 . T G 0 PASS DP=78;GPV=1;SPV=0.0091933;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:37,8:23,4:14,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
977 chr11 121830325 . T A 0 PASS DP=72;GPV=1;SPV=5.4315e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:23,12:12,6:11,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
978 chr11 122017449 . TAC T 0 PASS DP=51;GPV=1;SPV=0.043924;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,6:18,4:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
979 chr11 122367751 . G A 0 PASS DP=38;GPV=1;SPV=0.04422;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:14,7:11,6:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
980 chr11 122367757 . GAA G 0 PASS DP=34;GPV=1;SPV=0.034045;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:11,8:10,7:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
981 chr11 122374174 . C CTGTT 0 PASS DP=48;GPV=1;SPV=0.043255;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:7,14:1,8:6,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
982 chr11 122861418 . A T 0 PASS DP=17;GPV=1;SPV=0.047619;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:9:0,3:0,1:0,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
983 chr11 123668120 . T C 0 PASS DP=67;GPV=1;SPV=0.0025434;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:27,9:16,5:11,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
984 chr11 124828284 . AATTTATTT A 0 PASS DP=66;GPV=1;SPV=0.032794;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:24,8:13,5:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
985 chr11 124857970 . ATATATATAT A 0 PASS DP=23;GPV=1;SPV=0.35714;SS=2;SSC=4;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:3,2:3,1:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
986 chr11 124968725 . T G 0 PASS DP=66;GPV=1;SPV=0.0040177;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:30,10:15,5:15,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
987 chr11 127568678 . C CAAA 0 PASS DP=39;GPV=1;SPV=0.044511;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,8:11,6:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
988 chr11 127821345 . A AT 0 PASS DP=39;GPV=1;SPV=0.069764;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:21,8:11,4:10,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
989 chr11 127940250 . G GTTT 0 PASS DP=25;GPV=1;SPV=0.037461;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:5,7:1,5:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
990 chr11 130398137 . C G 0 PASS DP=74;GPV=1;SPV=1.6575e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:27,20:16,14:11,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
991 chr11 131080791 . A ATTT 0 PASS DP=33;GPV=1;SPV=0.035315;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,8:8,6:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
992 chr11 131193574 . C CT 0 PASS DP=58;GPV=1;SPV=0.014457;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:22,13:8,6:14,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
993 chr11 131266416 . T C 0 PASS DP=45;GPV=1;SPV=0.0013974;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:10,12:3,5:7,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
994 chr11 131653832 . A T 0 PASS DP=80;GPV=1;SPV=0.00044773;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:35,14:13,5:22,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
995 chr11 131722021 . A G 0 PASS DP=28;GPV=1;SPV=0.023537;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,5:2,3:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
996 chr11 132764193 . C G 0 PASS DP=71;GPV=1;SPV=5.2009e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:26,16:11,9:15,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
997 chr11 133393042 . C CTTT 0 PASS DP=42;GPV=1;SPV=0.18293;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:14,2:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
998 chr11 133534575 . A T 0 PASS DP=61;GPV=1;SPV=0.0003086;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:21,11:13,7:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
999 chr11 133647801 . C T 0 PASS DP=60;GPV=1;SPV=0.0062702;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:28,10:19,5:9,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1000 chr11 133675445 . G C 0 PASS DP=38;GPV=1;SPV=0.0069146;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,10:10,8:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1001 chr11 134454134 . G GT 0 PASS DP=73;GPV=1;SPV=0.041468;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:38,6:22,3:16,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1002 chr11 134457831 . T C 0 PASS DP=29;GPV=1;SPV=0.076628;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:5,3:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1003 chr12 398444 . T C 0 PASS DP=54;GPV=1;SPV=0.15152;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:3,2:1,1:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1004 chr12 722069 . G GAGAA 0 PASS DP=26;GPV=1;SPV=0.055341;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,6:6,4:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1005 chr12 1501252 . C T 0 PASS DP=33;GPV=1;SPV=0.11252;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,7:8,1:10,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1006 chr12 1662346 . C CCT 0 PASS DP=20;GPV=1;SPV=0.29371;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,4:0,0:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1007 chr12 2873398 . C CAA 0 PASS DP=33;GPV=1;SPV=0.031264;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,6:9,4:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1008 chr12 2883504 . TATATATA T 0 PASS DP=27;GPV=1;SPV=0.41667;SS=2;SSC=3;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:4,2:3,1:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1009 chr12 3304425 . T G 0 PASS DP=73;GPV=1;SPV=0.00056062;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:27,10:10,2:17,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1010 chr12 3752353 . CACGG C 0 PASS DP=63;GPV=1;SPV=0.001437;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:25,11:18,8:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1011 chr12 3931690 . G T 0 PASS DP=20;GPV=1;SPV=0.33333;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:4,2:0,1:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1012 chr12 4316865 . GTT G 0 PASS DP=74;GPV=1;SPV=0.0086713;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:34,9:22,5:12,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1013 chr12 4709366 . G GT 0 PASS DP=32;GPV=1;SPV=0.030401;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,8:9,3:5,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1014 chr12 5837205 . T A 0 PASS DP=51;GPV=1;SPV=0.074026;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:15,4:6,3:9,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1015 chr12 6057480 . T TTTA 0 PASS DP=34;GPV=1;SPV=0.037198;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,5:5,2:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1016 chr12 6068835 . CGTGT C 0 PASS DP=35;GPV=1;SPV=0.0012607;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:9,9:3,3:6,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1017 chr12 7257197 . G A 0 PASS DP=27;GPV=1;SPV=0.01971;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,8:5,4:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1018 chr12 7517715 . A AGAAAG 0 PASS DP=41;GPV=1;SPV=0.14404;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:15,7:12,6:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1019 chr12 7590078 . A G 0 PASS DP=21;GPV=1;SPV=0.055138;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:1,1:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1020 chr12 7827073 . C CTCTT 0 PASS DP=52;GPV=1;SPV=0.070228;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:9,1:14,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1021 chr12 7869465 . G T 0 PASS DP=73;GPV=1;SPV=0.016558;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:35,7:21,1:14,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1022 chr12 7878993 . A AC 0 PASS DP=30;GPV=1;SPV=0.0065359;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:3,10:1,6:2,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1023 chr12 8050896 . C A 0 PASS DP=16;GPV=1;SPV=0.26923;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:5,2:0,0:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1024 chr12 8205043 . GC G 0 PASS DP=85;GPV=1;SPV=0.048024;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:39,10:20,3:19,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1025 chr12 8213852 . C T 0 PASS DP=87;GPV=1;SPV=0.033008;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:35,11:19,3:16,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1026 chr12 8217002 . C T 0 PASS DP=85;GPV=1;SPV=0.011994;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:36,6:17,4:19,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1027 chr12 8463123 . GAACT G 0 PASS DP=61;GPV=1;SPV=5.6664e-05;SS=2;SSC=42;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:15,19:7,12:8,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1028 chr12 9109034 . T TTG 0 PASS DP=46;GPV=1;SPV=0.0067749;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:16,14:6,6:10,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1029 chr12 9120852 . C CATGTGTGTGT 0 PASS DP=46;GPV=1;SPV=0.036896;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:10,9:2,5:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1030 chr12 9293180 . A G 0 PASS DP=26;GPV=1;SPV=0.029565;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:1,2:9,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1031 chr12 10319865 . C CTT 0 PASS DP=26;GPV=1;SPV=0.048122;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,8:6,7:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1032 chr12 10339343 . C CTTTT 0 PASS DP=34;GPV=1;SPV=0.026073;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:6,4:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1033 chr12 12619615 . G A 0 PASS DP=57;GPV=1;SPV=0.058176;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:32,7:14,3:18,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1034 chr12 12694188 . CTTT C 0 PASS DP=19;GPV=1;SPV=0.13725;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:5,2:4,1:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1035 chr12 13466979 . T A 0 PASS DP=38;GPV=1;SPV=0.41667;SS=2;SSC=3;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:4,2:3,1:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1036 chr12 14025896 . TAAAAAAAAAAA T 0 PASS DP=27;GPV=1;SPV=0.32536;SS=2;SSC=4;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,4:11,1:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1037 chr12 14308319 . CT C 0 PASS DP=26;GPV=1;SPV=0.045652;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:7,4:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1038 chr12 16204435 . C CA 0 PASS DP=51;GPV=1;SPV=0.0010064;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:16,14:6,8:10,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1039 chr12 16674968 . GTTTTTTTTTTTT G 0 PASS DP=30;GPV=1;SPV=0.0016312;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:4,14:3,11:1,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1040 chr12 16723821 . C CT 0 PASS DP=55;GPV=1;SPV=0.097902;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:4,5:2,3:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1041 chr12 16844587 . ATG A 0 PASS DP=50;GPV=1;SPV=0.03183;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:12,9:5,4:7,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1042 chr12 17770160 . C T 0 PASS DP=25;GPV=1;SPV=0.037681;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,7:7,4:0,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1043 chr12 18085870 . GAGCCAC G 0 PASS DP=37;GPV=1;SPV=0.0028986;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:7,8:1,1:6,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1044 chr12 20321544 . AT A 0 PASS DP=34;GPV=1;SPV=0.037623;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:6,9:2,6:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1045 chr12 21201550 . T A 0 PASS DP=89;GPV=1;SPV=0.00029349;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:36,12:17,6:19,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1046 chr12 21287197 . A G 0 PASS DP=54;GPV=1;SPV=0.037551;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:24,5:14,4:10,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1047 chr12 22175363 . C T 0 PASS DP=35;GPV=1;SPV=0.092532;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:7,3:9,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1048 chr12 24428212 . C CA 0 PASS DP=59;GPV=1;SPV=0.031968;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,9:12,4:10,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1049 chr12 25464080 . CT C 0 PASS DP=28;GPV=1;SPV=0.024017;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,8:4,3:4,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1050 chr12 25870445 . C CTTTCT 0 PASS DP=37;GPV=1;SPV=0.025116;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,9:7,7:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1051 chr12 26035438 . T TATTATATA 0 PASS DP=42;GPV=1;SPV=0.032508;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:5,4:3,1:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1052 chr12 26653241 . C CT 0 PASS DP=26;GPV=1;SPV=0.066957;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:8,2:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1053 chr12 26909472 . C CT 0 PASS DP=43;GPV=1;SPV=0.028073;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,8:12,7:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1054 chr12 28049532 . T A 0 PASS DP=68;GPV=1;SPV=0.001508;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:29,11:13,7:16,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1055 chr12 29326534 . C T 0 PASS DP=57;GPV=1;SPV=0.034034;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,5:12,1:13,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1056 chr12 31083313 . A T 0 PASS DP=49;GPV=1;SPV=0.19313;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:21,3:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1057 chr12 33033991 . C T 0 PASS DP=82;GPV=1;SPV=0.0011939;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:40,15:24,8:16,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1058 chr12 34780417 . T C 0 PASS DP=110;GPV=1;SPV=0.048024;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:63:51,12:10,2:41,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1059 chr12 34809155 . C T 0 PASS DP=213;GPV=1;SPV=0.02399;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:112:100,12:51,4:49,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1060 chr12 34821905 . C G 0 PASS DP=20;GPV=1;SPV=0.0021672;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:3,6:0,2:3,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1061 chr12 34841473 . T C 0 PASS DP=42;GPV=1;SPV=0.13357;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:22,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1062 chr12 34862089 . T A 0 PASS DP=17;GPV=1;SPV=0.26471;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:0,0:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1063 chr12 34862093 . A C 0 PASS DP=18;GPV=1;SPV=0.23529;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:0,0:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1064 chr12 34873361 . G A 0 PASS DP=57;GPV=1;SPV=0.042219;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,9:5,1:17,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1065 chr12 34899613 . C A 0 PASS DP=65;GPV=1;SPV=0.0035972;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:26,8:11,2:15,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1066 chr12 34982824 . G T 0 PASS DP=170;GPV=1;SPV=0.024753;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:103:90,13:57,11:33,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1067 chr12 34988434 . C G 0 PASS DP=38;GPV=1;SPV=0.23776;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:23,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1068 chr12 35082495 . C A 0 PASS DP=25;GPV=1;SPV=0.07913;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:2,1:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1069 chr12 35127510 . G C 0 PASS DP=27;GPV=1;SPV=0.13561;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:0,0:13,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1070 chr12 35131108 . T G 0 PASS DP=38;GPV=1;SPV=0.20253;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:13,3:9,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1071 chr12 35134509 . G A 0 PASS DP=44;GPV=1;SPV=0.15083;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:14,1:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1072 chr12 35134528 . G T 0 PASS DP=48;GPV=1;SPV=0.11761;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:27,5:15,4:12,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1073 chr12 35135093 . G C 0 PASS DP=19;GPV=1;SPV=0.032508;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:0,0:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1074 chr12 35227415 . T A 0 PASS DP=47;GPV=1;SPV=0.15365;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:26,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1075 chr12 35261065 . G A 0 PASS DP=43;GPV=1;SPV=0.14804;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,5:22,4:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1076 chr12 35286147 . C T 0 PASS DP=62;GPV=1;SPV=0.083134;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:28,4:2,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1077 chr12 35587910 . TC T 0 PASS DP=28;GPV=1;SPV=0.048889;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:8,1:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1078 chr12 35657521 . G T 0 PASS DP=228;GPV=1;SPV=0.0024936;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:135:111,14:72,12:39,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1079 chr12 35696775 . T A 0 PASS DP=62;GPV=1;SPV=0.085333;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:36,6:22,4:14,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1080 chr12 35717049 . T C 0 PASS DP=40;GPV=1;SPV=0.080744;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:9,1:11,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1081 chr12 35839434 . A G 0 PASS DP=27;GPV=1;SPV=0.13561;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:0,0:13,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1082 chr12 35933157 . A T 0 PASS DP=141;GPV=1;SPV=0.04153;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:83:72,11:16,3:56,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1083 chr12 35966445 . A G 0 PASS DP=198;GPV=1;SPV=0.0062073;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:107:82,14:26,2:56,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1084 chr12 36072677 . T A 0 PASS DP=65;GPV=1;SPV=0.087004;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:31,4:1,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1085 chr12 36073041 . T G 0 PASS DP=25;GPV=1;SPV=0.18814;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:0,0:13,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1086 chr12 36178499 . T A 0 PASS DP=44;GPV=1;SPV=0.12928;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:1,0:22,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1087 chr12 36490969 . C T 0 PASS DP=110;GPV=1;SPV=0.01371;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:61:54,7:32,4:22,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1088 chr12 36525148 . T G 0 PASS DP=53;GPV=1;SPV=0.13984;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:25,3:21,1:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1089 chr12 36609436 . G C 0 PASS DP=34;GPV=1;SPV=0.15773;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:17,3:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1090 chr12 36700884 . G A 0 PASS DP=31;GPV=1;SPV=0.0024117;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,9:9,7:0,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1091 chr12 37060803 . C A 0 PASS DP=23;GPV=1;SPV=0.15415;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:0,0:11,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1092 chr12 37237277 . T C 0 PASS DP=71;GPV=1;SPV=0.074973;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:41,6:12,2:29,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1093 chr12 38928697 . ATGTG A 0 PASS DP=41;GPV=1;SPV=0.047826;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:8,12:5,9:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1094 chr12 40288421 . C T 0 PASS DP=70;GPV=1;SPV=0.00022;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:21,9:11,5:10,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1095 chr12 40294164 . T TATC 0 PASS DP=45;GPV=1;SPV=0.027541;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:9,3:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1096 chr12 40294176 . T A 0 PASS DP=49;GPV=1;SPV=0.027862;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:11,3:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1097 chr12 40296839 . GTCTTTCTC G 0 PASS DP=67;GPV=1;SPV=0.0094327;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:31,8:19,4:12,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1098 chr12 40924881 . C CATATATATATATATAT 0 PASS DP=42;GPV=1;SPV=0.094934;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:12,3:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1099 chr12 40925834 . G GTA 0 PASS DP=36;GPV=1;SPV=0.068436;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,5:7,3:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1100 chr12 41822421 . G A 0 PASS DP=74;GPV=1;SPV=0.040848;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:35,5:14,3:21,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1101 chr12 42484059 . C A 0 PASS DP=24;GPV=1;SPV=0.017499;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,8:5,5:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1102 chr12 42974639 . GTGTATATATA G 0 PASS DP=19;GPV=1;SPV=0.21212;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:4,4:2,1:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1103 chr12 43476187 . A C 0 PASS DP=27;GPV=1;SPV=0.0087567;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,8:2,1:4,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1104 chr12 43554876 . T A 0 PASS DP=27;GPV=1;SPV=0.010836;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:4,5:3,4:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1105 chr12 43620454 . G T 0 PASS DP=63;GPV=1;SPV=0.034215;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:31,6:19,5:12,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1106 chr12 44214138 . AT A 0 PASS DP=40;GPV=1;SPV=0.03285;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:11,11:7,8:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1107 chr12 46256636 . C CAGAGAGAGAGAGAG 0 PASS DP=62;GPV=1;SPV=0.010978;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:15,8:11,5:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1108 chr12 46488153 . TAC T 0 PASS DP=31;GPV=1;SPV=0.040535;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,8:10,3:4,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1109 chr12 47354710 . CAT C 0 PASS DP=50;GPV=1;SPV=0.033698;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:25,7:12,3:13,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1110 chr12 47396025 . C T 0 PASS DP=73;GPV=1;SPV=0.00091263;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:28,15:17,10:11,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1111 chr12 47971844 . T TAG 0 PASS DP=53;GPV=1;SPV=0.1382;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:30,5:11,2:19,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1112 chr12 48983302 . AAAAAAATATAT A 0 PASS DP=30;GPV=1;SPV=0.022311;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,6:5,2:3,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1113 chr12 49345559 . G A 0 PASS DP=61;GPV=1;SPV=0.0010308;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:26,21:12,13:14,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1114 chr12 50158060 . CA C 0 PASS DP=34;GPV=1;SPV=0.02882;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,6:11,3:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1115 chr12 50214051 . C CACACACACACACACACAT 0 PASS DP=55;GPV=1;SPV=0.03931;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:19,12:11,3:8,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1116 chr12 50218910 . C A 0 PASS DP=56;GPV=1;SPV=0.49123;SS=2;SSC=3;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:13,4:6,1:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1117 chr12 50378577 . C T 0 PASS DP=47;GPV=1;SPV=0.076601;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:12,7:5,4:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1118 chr12 51721131 . T A 0 PASS DP=35;GPV=1;SPV=0.02914;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:4,5:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1119 chr12 52005109 . G A 0 PASS DP=74;GPV=1;SPV=7.761e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:26,13:13,7:13,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1120 chr12 52954857 . G A 0 PASS DP=59;GPV=1;SPV=0.15;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:6,3:3,2:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1121 chr12 54202733 . CAA C 0 PASS DP=25;GPV=1;SPV=0.014907;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,5:5,4:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1122 chr12 54323622 . C CTCTTTCTTTCTT 0 PASS DP=48;GPV=1;SPV=0.15083;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:24,4:2,1:22,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1123 chr12 54370136 . GT G 0 PASS DP=73;GPV=1;SPV=0.02902;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:32,5:23,4:9,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1124 chr12 55052474 . TTTTC T 0 PASS DP=44;GPV=1;SPV=0.036825;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:12,8:2,2:10,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1125 chr12 55667695 . TTG T 0 PASS DP=59;GPV=1;SPV=0.029488;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:23,11:17,8:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1126 chr12 56481199 . CT C 0 PASS DP=17;GPV=1;SPV=0.052941;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:5,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1127 chr12 56658163 . T G 0 PASS DP=31;GPV=1;SPV=0.22222;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:3,2:3,1:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1128 chr12 57100718 . GAA G 0 PASS DP=26;GPV=1;SPV=0.020734;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:3,4:3,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1129 chr12 57656371 . GTCTAGCTCAAGGTTTGTAAACACACCAATCAGCACCCTGTA G 0 PASS DP=55;GPV=1;SPV=0.028809;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,7:9,3:12,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1130 chr12 57675761 . C CTTTTTTT 0 PASS DP=40;GPV=1;SPV=0.046847;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:3,2:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1131 chr12 57697934 . C A 0 PASS DP=44;GPV=1;SPV=0.0046297;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,10:7,6:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1132 chr12 59014908 . T C 0 PASS DP=60;GPV=1;SPV=0.00083483;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:23,11:9,5:14,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1133 chr12 59437058 . A AAAGAAAG 0 PASS DP=22;GPV=1;SPV=0.14141;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:4,4:4,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1134 chr12 60262266 . G A 0 PASS DP=68;GPV=1;SPV=3.4873e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:23,15:12,9:11,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1135 chr12 61019806 . G GTA 0 PASS DP=41;GPV=1;SPV=0.038274;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:13,3:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1136 chr12 62211121 . G A 0 PASS DP=63;GPV=1;SPV=0.0022162;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:25,9:8,4:17,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1137 chr12 63045175 . G GACAC 0 PASS DP=56;GPV=1;SPV=0.032993;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:20,11:15,5:5,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1138 chr12 64039628 . C CGTGTGTGTGTGTGTGTGTGTGTGT 0 PASS DP=28;GPV=1;SPV=0.23636;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,3:7,1:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1139 chr12 64288687 . C G 0 PASS DP=61;GPV=1;SPV=0.0038864;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:29,13:23,6:6,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1140 chr12 65074817 . C CAAA 0 PASS DP=31;GPV=1;SPV=0.016957;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,6:5,5:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1141 chr12 65133739 . T TGGAA 0 PASS DP=59;GPV=1;SPV=0.020376;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:25,10:12,5:13,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1142 chr12 65855699 . A AGATGAT 0 PASS DP=51;GPV=1;SPV=0.0033988;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:9,16:5,5:4,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1143 chr12 66723239 . T TCTTCCTTCCTTC 0 PASS DP=16;GPV=1;SPV=0.051282;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:1,2:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1144 chr12 67634086 . A T 0 PASS DP=33;GPV=1;SPV=0.2381;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:3,3:3,2:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1145 chr12 69200335 . G A 0 PASS DP=34;GPV=1;SPV=0.047101;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,5:4,4:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1146 chr12 69200653 . GAAGAGAT G 0 PASS DP=32;GPV=1;SPV=0.07699;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:6,2:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1147 chr12 69282822 . A G 0 PASS DP=32;GPV=1;SPV=0.13473;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:10,2:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1148 chr12 69346764 . A ATT 0 PASS DP=27;GPV=1;SPV=0.0051869;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,9:4,3:4,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1149 chr12 69361272 . T G 0 PASS DP=49;GPV=1;SPV=0.16972;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:17,2:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1150 chr12 69747333 . A T 0 PASS DP=51;GPV=1;SPV=0.057118;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:13,6:5,3:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1151 chr12 72429338 . C CATAATA 0 PASS DP=55;GPV=1;SPV=0.0054686;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:21,14:15,10:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1152 chr12 73778707 . T TA 0 PASS DP=50;GPV=1;SPV=0.019411;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:18,14:12,10:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1153 chr12 75379854 . A T 0 PASS DP=51;GPV=1;SPV=0.14626;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:17,4:9,1:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1154 chr12 76215499 . TATA T 0 PASS DP=24;GPV=1;SPV=0.047619;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:12:1,5:0,1:1,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1155 chr12 77722882 . AATG A 0 PASS DP=66;GPV=1;SPV=0.00038845;SS=2;SSC=34;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:24,11:8,3:16,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1156 chr12 77873768 . G A 0 PASS DP=31;GPV=1;SPV=0.15152;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:3,2:0,1:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1157 chr12 79046386 . C T 0 PASS DP=77;GPV=1;SPV=4.5976e-06;SS=2;SSC=53;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:24,16:12,10:12,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1158 chr12 80394221 . T G 0 PASS DP=28;GPV=1;SPV=0.18132;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,4:6,3:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1159 chr12 80462236 . C T 0 PASS DP=90;GPV=1;SPV=0.021075;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:39,8:25,2:14,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1160 chr12 81584908 . A G 0 PASS DP=47;GPV=1;SPV=0.070922;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:11,3:10,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1161 chr12 81927492 . C A 0 PASS DP=42;GPV=1;SPV=0.065353;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:10,3:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1162 chr12 83045707 . T TCA 0 PASS DP=60;GPV=1;SPV=0.0016775;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:21,8:11,3:10,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1163 chr12 83360999 . G A 0 PASS DP=62;GPV=1;SPV=0.23077;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:6,3:3,2:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1164 chr12 83944936 . A ATTTTTTTTTTT 0 PASS DP=25;GPV=1;SPV=0.14387;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:7,2:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1165 chr12 84615815 . A G 0 PASS DP=60;GPV=1;SPV=0.036872;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:27,5:13,1:14,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1166 chr12 86152090 . A T 0 PASS DP=68;GPV=1;SPV=0.00063139;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:25,10:15,4:10,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1167 chr12 86809568 . A T 0 PASS DP=63;GPV=1;SPV=0.10224;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:27,3:13,2:14,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1168 chr12 87425877 . G GGGAAATTGTAGGATACAATAAATTCCTCTT 0 PASS DP=44;GPV=1;SPV=0.011333;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,11:10,5:6,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1169 chr12 88086704 . T TATCCATCCATCCATCCATCC 0 PASS DP=64;GPV=1;SPV=0.0065482;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:25,11:14,3:11,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1170 chr12 88703657 . A G 0 PASS DP=59;GPV=1;SPV=0.074163;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:27,4:13,2:14,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1171 chr12 89393181 . CA C 0 PASS DP=42;GPV=1;SPV=0.017327;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,9:8,8:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1172 chr12 90418660 . G T 0 PASS DP=68;GPV=1;SPV=2.1107e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:22,15:14,9:8,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1173 chr12 90694392 . CT C 0 PASS DP=31;GPV=1;SPV=0.068436;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:10,4:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1174 chr12 91421235 . A T 0 PASS DP=25;GPV=1;SPV=0.011899;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,9:3,6:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1175 chr12 91630884 . G C 0 PASS DP=77;GPV=1;SPV=0.00028557;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:32,14:15,7:17,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1176 chr12 91752587 . TTC T 0 PASS DP=55;GPV=1;SPV=0.079987;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:29,5:15,4:14,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1177 chr12 92007252 . A ATT 0 PASS DP=26;GPV=1;SPV=0.045652;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:5,4:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1178 chr12 92023405 . C CA 0 PASS DP=36;GPV=1;SPV=0.046146;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,5:6,4:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1179 chr12 93496643 . T TAAA 0 PASS DP=35;GPV=1;SPV=0.042724;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,6:4,5:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1180 chr12 93917083 . T TA 0 PASS DP=41;GPV=1;SPV=0.015895;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:15,11:9,5:6,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1181 chr12 94668467 . T TA 0 PASS DP=35;GPV=1;SPV=0.062683;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,5:9,3:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1182 chr12 94941821 . A T 0 PASS DP=58;GPV=1;SPV=0.051796;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:28,5:13,3:15,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1183 chr12 95029559 . C CT 0 PASS DP=33;GPV=1;SPV=0.018088;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,8:6,7:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1184 chr12 95594665 . A AT 0 PASS DP=33;GPV=1;SPV=0.21886;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,5:8,3:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1185 chr12 96482765 . G GA 0 PASS DP=45;GPV=1;SPV=0.034961;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:18,11:12,9:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1186 chr12 96902920 . CTTT C 0 PASS DP=21;GPV=1;SPV=0.13866;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,4:5,3:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1187 chr12 96916230 . T TTTATTA 0 PASS DP=33;GPV=1;SPV=0.04958;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:9,8:4,1:5,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1188 chr12 98002955 . G GA 0 PASS DP=33;GPV=1;SPV=0.057842;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,4:12,3:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1189 chr12 98252998 . C CAAAAAAA 0 PASS DP=38;GPV=1;SPV=0.10365;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,5:13,3:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1190 chr12 99907812 . TAA T 0 PASS DP=35;GPV=1;SPV=0.048122;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:7,8:3,6:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1191 chr12 101009613 . T A 0 PASS DP=59;GPV=1;SPV=3.0981e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:19,17:10,9:9,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1192 chr12 101470401 . C CT 0 PASS DP=56;GPV=1;SPV=0.022272;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:22,13:11,7:11,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1193 chr12 101661908 . A G 0 PASS DP=45;GPV=1;SPV=0.13742;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:8,3:16,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1194 chr12 101661912 . A G 0 PASS DP=48;GPV=1;SPV=0.068571;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:25,6:10,4:15,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1195 chr12 101884369 . C CAA 0 PASS DP=32;GPV=1;SPV=0.04422;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,7:11,6:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1196 chr12 102962470 . CT C 0 PASS DP=45;GPV=1;SPV=0.026993;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:15,9:5,2:10,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1197 chr12 104115579 . G A 0 PASS DP=29;GPV=1;SPV=0.017848;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,8:7,4:1,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1198 chr12 104440482 . A G 0 PASS DP=29;GPV=1;SPV=0.042146;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:5,2:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1199 chr12 104763912 . G T 0 PASS DP=44;GPV=1;SPV=0.0010074;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:15,11:5,8:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1200 chr12 105186622 . T TATGATATCG 0 PASS DP=52;GPV=1;SPV=0.026928;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:15,5:9,2:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1201 chr12 105361811 . T C 0 PASS DP=47;GPV=1;SPV=0.00040059;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:5,4:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1202 chr12 106200353 . T C 0 PASS DP=40;GPV=1;SPV=0.14936;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,5:10,4:13,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1203 chr12 106372343 . T G 0 PASS DP=50;GPV=1;SPV=0.038501;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,6:10,4:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1204 chr12 106935571 . C G 0 PASS DP=56;GPV=1;SPV=0.025729;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,5:13,1:10,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1205 chr12 106991393 . G T 0 PASS DP=74;GPV=1;SPV=0.019644;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:34,10:19,7:15,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1206 chr12 107654842 . A G 0 PASS DP=49;GPV=1;SPV=0.14851;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:16,3:11,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1207 chr12 108108401 . A ATTT 0 PASS DP=48;GPV=1;SPV=9.123e-05;SS=2;SSC=40;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:10,17:6,10:4,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1208 chr12 108422367 . A ATTT 0 PASS DP=38;GPV=1;SPV=0.037648;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,7:4,3:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1209 chr12 109493040 . T G 0 PASS DP=67;GPV=1;SPV=0.00022263;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:23,11:11,3:12,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1210 chr12 109834869 . C CTT 0 PASS DP=44;GPV=1;SPV=0.027668;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:4,15:1,7:3,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1211 chr12 109969162 . CT C 0 PASS DP=38;GPV=1;SPV=0.065471;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:13,8:7,2:6,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1212 chr12 110293870 . AT A 0 PASS DP=26;GPV=1;SPV=0.080632;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:8,1:4,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1213 chr12 110797520 . C T 0 PASS DP=45;GPV=1;SPV=0.0079921;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:13,11:10,5:3,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1214 chr12 111376994 . A ATT 0 PASS DP=19;GPV=1;SPV=0.085139;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:2,3:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1215 chr12 111811827 . G T 0 PASS DP=67;GPV=1;SPV=0.0027837;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:26,8:11,5:15,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1216 chr12 112677377 . TCCTC T 0 PASS DP=18;GPV=1;SPV=0.17857;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:2,3:0,0:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1217 chr12 113214507 . CA C 0 PASS DP=30;GPV=1;SPV=0.04735;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:10,6:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1218 chr12 113472797 . G C 0 PASS DP=80;GPV=1;SPV=0.00016475;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:33,15:9,6:24,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1219 chr12 114003961 . C CACACACACACACAT 0 PASS DP=21;GPV=1;SPV=0.039683;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:0,4:0,3:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1220 chr12 114816695 . C G 0 PASS DP=72;GPV=1;SPV=0.00080274;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:32,14:18,10:14,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1221 chr12 114915630 . C T 0 PASS DP=58;GPV=1;SPV=0.0066305;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:26,9:7,5:19,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1222 chr12 115260841 . C CGTGTGTGTGTGTGT 0 PASS DP=40;GPV=1;SPV=0.011352;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:2,14:0,10:2,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1223 chr12 115799482 . C T 0 PASS DP=55;GPV=1;SPV=0.18915;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:35,5:8,1:27,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1224 chr12 116775261 . C CA 0 PASS DP=43;GPV=1;SPV=0.018762;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,8:9,5:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1225 chr12 117560566 . A G 0 PASS DP=63;GPV=1;SPV=0.019794;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:28,6:13,4:15,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1226 chr12 117858708 . G A 0 PASS DP=74;GPV=1;SPV=4.5846e-06;SS=2;SSC=53;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:25,21:10,12:15,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1227 chr12 120279628 . T G 0 PASS DP=24;GPV=1;SPV=0.26471;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,2:1,1:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1228 chr12 120301362 . C CA 0 PASS DP=73;GPV=1;SPV=0.064915;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:22,4:7,2:15,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1229 chr12 120802397 . ATG A 0 PASS DP=33;GPV=1;SPV=0.10021;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,4:6,1:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1230 chr12 121296804 . C T 0 PASS DP=53;GPV=1;SPV=0.00052641;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:14,19:9,11:5,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1231 chr12 121297857 . C CTTT 0 PASS DP=33;GPV=1;SPV=0.11096;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,5:4,2:13,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1232 chr12 121842741 . CTT C 0 PASS DP=27;GPV=1;SPV=0.16725;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,4:6,3:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1233 chr12 121912868 . C CA 0 PASS DP=28;GPV=1;SPV=0.029565;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,7:5,6:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1234 chr12 122250341 . C G 0 PASS DP=67;GPV=1;SPV=0.00015414;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:25,14:10,7:15,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1235 chr12 122357505 . GT G 0 PASS DP=55;GPV=1;SPV=0.11998;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:13,1:16,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1236 chr12 122499269 . C CT 0 PASS DP=22;GPV=1;SPV=0.063246;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,5:6,2:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1237 chr12 123511963 . TCTG T 0 PASS DP=21;GPV=1;SPV=0.10217;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,4:3,3:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1238 chr12 123894082 . CT C 0 PASS DP=31;GPV=1;SPV=0.045822;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,9:7,6:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1239 chr12 124365796 . C T 0 PASS DP=79;GPV=1;SPV=2.1151e-06;SS=2;SSC=56;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:26,20:10,7:16,13
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1240 chr12 124927433 . T C 0 PASS DP=49;GPV=1;SPV=0.00056247;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:17,12:6,6:11,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1241 chr12 124927434 . T C 0 PASS DP=53;GPV=1;SPV=0.010309;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:18,12:6,7:12,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1242 chr12 125077959 . C G 0 PASS DP=83;GPV=1;SPV=9.7831e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:30,18:15,8:15,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1243 chr12 125204231 . G A 0 PASS DP=51;GPV=1;SPV=0.035434;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:3,3:16,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1244 chr12 126194711 . A T 0 PASS DP=61;GPV=1;SPV=0.0077151;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:25,7:11,3:14,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1245 chr12 126323039 . C A 0 PASS DP=53;GPV=1;SPV=0.00011403;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:16,12:8,7:8,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1246 chr12 127096468 . T G 0 PASS DP=58;GPV=1;SPV=0.074163;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:18,2:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1247 chr12 128241172 . CATGT C 0 PASS DP=30;GPV=1;SPV=0.17679;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:5,1:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1248 chr12 128698206 . A T 0 PASS DP=36;GPV=1;SPV=0.030499;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:5,4:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1249 chr12 128717041 . A T 0 PASS DP=54;GPV=1;SPV=0.11371;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:19,2:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1250 chr12 128919975 . C CCA 0 PASS DP=39;GPV=1;SPV=0.10714;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:1,2:0,0:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1251 chr12 129019084 . A T 0 PASS DP=58;GPV=1;SPV=0.17398;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:34,4:17,1:17,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1252 chr12 129205376 . GA G 0 PASS DP=35;GPV=1;SPV=0.0062662;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:9,15:7,12:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1253 chr12 130533169 . G A 0 PASS DP=68;GPV=1;SPV=0.00012624;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:22,11:15,6:7,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1254 chr12 131585278 . T TG 0 PASS DP=33;GPV=1;SPV=0.034545;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:7,3:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1255 chr12 131585295 . G A 0 PASS DP=37;GPV=1;SPV=0.042901;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,5:7,3:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1256 chr12 131588543 . G A 0 PASS DP=21;GPV=1;SPV=0.082707;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:8,3:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1257 chr12 131801480 . G A 0 PASS DP=24;GPV=1;SPV=0.051471;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,3:0,1:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1258 chr12 132136345 . A C 0 PASS DP=24;GPV=1;SPV=0.055901;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,4:4,2:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1259 chr12 132770233 . A C 0 PASS DP=55;GPV=1;SPV=0.46154;SS=2;SSC=3;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:7,2:3,1:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1260 chr12 132830326 . C CA 0 PASS DP=44;GPV=1;SPV=0.0057786;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:11,11:6,9:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1261 chr12 132937359 . C CA 0 PASS DP=32;GPV=1;SPV=0.037681;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:8,11:5,9:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1262 chr13 16971208 . G A 0 PASS DP=17;GPV=1;SPV=0.20588;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:6,2:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1263 chr13 16971209 . A T 0 PASS DP=17;GPV=1;SPV=0.20588;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:6,2:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1264 chr13 18450173 . A G 0 PASS DP=23;GPV=1;SPV=0.15415;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:5,3:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1265 chr13 18462680 . A G 0 PASS DP=40;GPV=1;SPV=0.053015;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:6,2:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1266 chr13 19353957 . G A 0 PASS DP=43;GPV=1;SPV=0.027099;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,8:6,3:10,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1267 chr13 20708978 . A G 0 PASS DP=30;GPV=1;SPV=0.14279;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,5:8,2:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1268 chr13 21206414 . T C 0 PASS DP=54;GPV=1;SPV=0.029105;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:22,8:11,5:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1269 chr13 22384933 . C CT 0 PASS DP=27;GPV=1;SPV=0.036405;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:3,7:1,6:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1270 chr13 22511663 . A G 0 PASS DP=72;GPV=1;SPV=0.00024849;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:28,13:16,9:12,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1271 chr13 22852482 . C CAA 0 PASS DP=34;GPV=1;SPV=0.065277;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,6:12,5:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1272 chr13 22855254 . C CT 0 PASS DP=32;GPV=1;SPV=0.019346;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,8:8,4:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1273 chr13 24468400 . C CT 0 PASS DP=38;GPV=1;SPV=0.0096894;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:7,12:3,5:4,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1274 chr13 24973356 . AAC A 0 PASS DP=48;GPV=1;SPV=0.012176;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,9:11,4:3,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1275 chr13 25835059 . T C 0 PASS DP=57;GPV=1;SPV=0.0028757;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:26,16:14,8:12,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1276 chr13 26768786 . A G 0 PASS DP=64;GPV=1;SPV=7.3464e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:19,11:7,5:12,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1277 chr13 27214401 . A G 0 PASS DP=64;GPV=1;SPV=0.047147;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:22,5:9,3:13,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1278 chr13 28006728 . C CT 0 PASS DP=26;GPV=1;SPV=0.018634;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,5:5,3:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1279 chr13 28411546 . C CA 0 PASS DP=37;GPV=1;SPV=0.023193;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,8:6,7:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1280 chr13 29073530 . C T 0 PASS DP=79;GPV=1;SPV=0.18293;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:24,4:15,2:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1281 chr13 30219405 . C G 0 PASS DP=66;GPV=1;SPV=0.0021523;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:29,11:13,5:16,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1282 chr13 30433665 . A C 0 PASS DP=49;GPV=1;SPV=0.052652;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:25,6:11,1:14,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1283 chr13 30787963 . G A 0 PASS DP=74;GPV=1;SPV=0.00011498;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:27,13:11,5:16,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1284 chr13 34601288 . G A 0 PASS DP=29;GPV=1;SPV=0.0040793;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:19:1,6:1,2:0,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1285 chr13 35732109 . T C 0 PASS DP=54;GPV=1;SPV=0.12939;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:19,2:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1286 chr13 37254645 . G C 0 PASS DP=72;GPV=1;SPV=1.3615e-06;SS=2;SSC=58;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:22,21:10,15:12,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1287 chr13 38209691 . C CA 0 PASS DP=31;GPV=1;SPV=0.038406;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,6:5,3:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1288 chr13 38676047 . T C 0 PASS DP=46;GPV=1;SPV=0.074171;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:25,7:17,4:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1289 chr13 38977750 . AT A 0 PASS DP=35;GPV=1;SPV=0.15398;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,4:11,3:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1290 chr13 39984753 . CTAAAATAAAA C 0 PASS DP=33;GPV=1;SPV=0.01828;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:10,14:2,6:8,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1291 chr13 41881750 . T C 0 PASS DP=36;GPV=1;SPV=0.069853;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,5:12,2:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1292 chr13 42133185 . T A 0 PASS DP=49;GPV=1;SPV=0.1121;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:8,2:17,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1293 chr13 42362135 . C CT 0 PASS DP=24;GPV=1;SPV=0.047101;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,5:3,3:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1294 chr13 42877448 . A C 0 PASS DP=17;GPV=1;SPV=0.23333;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:6,2:0,0:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1295 chr13 42882941 . G C 0 PASS DP=40;GPV=1;SPV=0.024224;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:8,5:2,2:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1296 chr13 43048325 . C CA 0 PASS DP=60;GPV=1;SPV=0.0060655;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:24,9:18,8:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1297 chr13 43434941 . T G 0 PASS DP=42;GPV=1;SPV=0.043889;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,6:9,3:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1298 chr13 43643650 . C T 0 PASS DP=64;GPV=1;SPV=0.043132;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:11,2:15,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1299 chr13 45153976 . C CA 0 PASS DP=26;GPV=1;SPV=0.029565;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:4,6:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1300 chr13 45435530 . CATATATATAT C 0 PASS DP=18;GPV=1;SPV=0.026515;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:2,5:1,4:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1301 chr13 46136076 . C T 0 PASS DP=46;GPV=1;SPV=0.32967;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:7,4:6,2:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1302 chr13 46648338 . T G 0 PASS DP=65;GPV=1;SPV=0.00016784;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,10:9,6:11,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1303 chr13 47055948 . T C 0 PASS DP=77;GPV=1;SPV=0.00024491;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:33,16:12,5:21,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1304 chr13 47244961 . G A 0 PASS DP=79;GPV=1;SPV=1.6849e-06;SS=2;SSC=57;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:26,21:8,10:18,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1305 chr13 48027627 . AT A 0 PASS DP=47;GPV=1;SPV=0.0032683;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:13,11:6,3:7,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1306 chr13 48209639 . C G 0 PASS DP=58;GPV=1;SPV=0.09513;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:32,5:17,2:15,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1307 chr13 49839205 . T TACAC 0 PASS DP=49;GPV=1;SPV=0.044074;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,8:6,4:12,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1308 chr13 50796833 . C T 0 PASS DP=60;GPV=1;SPV=0.00039186;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:22,12:8,5:14,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1309 chr13 51393074 . A AT 0 PASS DP=59;GPV=1;SPV=0.021672;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:24,14:17,8:7,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1310 chr13 53122959 . A AT 0 PASS DP=49;GPV=1;SPV=0.026941;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:22,6:12,1:10,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1311 chr13 53122978 . C T 0 PASS DP=44;GPV=1;SPV=0.092234;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:9,6:3,1:6,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1312 chr13 53736791 . T A 0 PASS DP=68;GPV=1;SPV=3.3224e-07;SS=2;SSC=64;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:18,21:8,9:10,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1313 chr13 54365389 . A T 0 PASS DP=75;GPV=1;SPV=0.0020001;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:35,12:22,7:13,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1314 chr13 55329147 . C CAA 0 PASS DP=38;GPV=1;SPV=0.076023;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:9,8:6,7:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1315 chr13 56266222 . C CA 0 PASS DP=38;GPV=1;SPV=0.035568;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:9,4:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1316 chr13 56726381 . AGTGTGTGTGTGT A 0 PASS DP=33;GPV=1;SPV=0.29231;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,4:8,1:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1317 chr13 57862275 . G GTATC 0 PASS DP=55;GPV=1;SPV=0.020192;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:19,10:10,7:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1318 chr13 59366834 . G A 0 PASS DP=33;GPV=1;SPV=0.041466;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,6:4,4:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1319 chr13 61357580 . T C 0 PASS DP=42;GPV=1;SPV=0.11302;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:12,1:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1320 chr13 62010071 . C CTA 0 PASS DP=16;GPV=1;SPV=0.051282;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:2,1:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1321 chr13 62613024 . G T 0 PASS DP=69;GPV=1;SPV=0.00012187;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,9:11,3:8,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1322 chr13 62711562 . AT A 0 PASS DP=22;GPV=1;SPV=0.088235;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,4:5,1:1,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1323 chr13 63511422 . TCCTTTATGTCTTTCAGCCAG T 0 PASS DP=54;GPV=1;SPV=0.06588;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:32,9:16,3:16,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1324 chr13 63772227 . C T 0 PASS DP=56;GPV=1;SPV=0.0008665;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:21,11:13,5:8,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1325 chr13 63781265 . AT A 0 PASS DP=69;GPV=1;SPV=0.00065978;SS=2;SSC=31;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:27,11:14,9:13,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1326 chr13 63781267 . T C 0 PASS DP=74;GPV=1;SPV=0.00040099;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:28,11:14,9:14,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1327 chr13 64231492 . T C 0 PASS DP=30;GPV=1;SPV=0.14279;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,5:13,2:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1328 chr13 64714566 . A ATTTTTTTTTTTT 0 PASS DP=27;GPV=1;SPV=0.077778;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:4,1:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1329 chr13 66198592 . T TTA 0 PASS DP=50;GPV=1;SPV=0.14923;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:24,3:16,1:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1330 chr13 67483902 . T C 0 PASS DP=71;GPV=1;SPV=0.016905;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:34,7:18,4:16,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1331 chr13 67561844 . T C 0 PASS DP=68;GPV=1;SPV=0.020125;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:26,10:9,5:17,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1332 chr13 69458583 . CTT C 0 PASS DP=33;GPV=1;SPV=0.087179;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,5:7,4:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1333 chr13 69884934 . CT C 0 PASS DP=57;GPV=1;SPV=0.18687;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:34,4:21,3:13,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1334 chr13 70256043 . A G 0 PASS DP=64;GPV=1;SPV=0.00012866;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:24,16:11,6:13,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1335 chr13 70259728 . TAGATGG T 0 PASS DP=73;GPV=1;SPV=0.0068286;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:28,13:16,6:12,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1336 chr13 70549015 . A G 0 PASS DP=47;GPV=1;SPV=0.083333;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:2,5:1,4:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1337 chr13 70961531 . T G 0 PASS DP=75;GPV=1;SPV=0.00088242;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:27,19:20,11:7,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1338 chr13 71749199 . G C 0 PASS DP=55;GPV=1;SPV=0.012218;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:13,4:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1339 chr13 72542867 . AGAGAGAT A 0 PASS DP=59;GPV=1;SPV=0.03845;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:19,4:10,3:9,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1340 chr13 72542882 . G A 0 PASS DP=63;GPV=1;SPV=0.041011;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:18,4:10,3:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1341 chr13 73402909 . CACACATATATAT C 0 PASS DP=39;GPV=1;SPV=0.11425;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:13,2:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1342 chr13 73932713 . T C 0 PASS DP=62;GPV=1;SPV=6.8069e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:18,11:6,9:12,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1343 chr13 75142489 . C A 0 PASS DP=64;GPV=1;SPV=0.022328;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:23,10:8,4:15,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1344 chr13 76968491 . C G 0 PASS DP=83;GPV=1;SPV=4.2063e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:31,15:20,9:11,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1345 chr13 77360820 . T A 0 PASS DP=28;GPV=1;SPV=0.003096;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:3,6:2,4:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1346 chr13 77519769 . C T 0 PASS DP=51;GPV=1;SPV=0.042521;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:0,0:20,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1347 chr13 78087327 . CACTTATTAA C 0 PASS DP=73;GPV=1;SPV=0.0028166;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:31,9:17,5:14,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1348 chr13 78087338 . A T 0 PASS DP=74;GPV=1;SPV=0.0011256;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:28,9:17,5:11,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1349 chr13 78191168 . C A 0 PASS DP=67;GPV=1;SPV=9.8808e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:24,14:7,8:17,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1350 chr13 78822993 . A AAAG 0 PASS DP=41;GPV=1;SPV=0.023692;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:11,10:6,3:5,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1351 chr13 79628093 . T TTAAATAAATAAA 0 PASS DP=55;GPV=1;SPV=0.019466;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:22,10:7,9:15,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1352 chr13 82339780 . C T 0 PASS DP=32;GPV=1;SPV=0.011976;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:12,12:5,4:7,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1353 chr13 83964182 . A G 0 PASS DP=41;GPV=1;SPV=0.03942;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,8:10,4:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1354 chr13 84796800 . T TTC 0 PASS DP=49;GPV=1;SPV=0.0013799;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:18,15:12,6:6,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1355 chr13 85340126 . AT A 0 PASS DP=64;GPV=1;SPV=0.085095;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:14,4:8,1:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1356 chr13 85927534 . G A 0 PASS DP=29;GPV=1;SPV=0.16319;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:9,3:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1357 chr13 87465103 . A ATG 0 PASS DP=45;GPV=1;SPV=0.1021;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:23,5:8,2:15,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1358 chr13 87465110 . C T 0 PASS DP=43;GPV=1;SPV=0.075461;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:23,7:10,3:13,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1359 chr13 87782673 . T A 0 PASS DP=51;GPV=1;SPV=0.0091917;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:22,8:10,4:12,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1360 chr13 88317179 . A G 0 PASS DP=27;GPV=1;SPV=0.090909;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:3,3:1,1:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1361 chr13 88317181 . A C 0 PASS DP=27;GPV=1;SPV=0.090909;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:3,3:1,2:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1362 chr13 88622742 . C T 0 PASS DP=85;GPV=1;SPV=0.00020063;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:31,11:13,5:18,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1363 chr13 90500067 . C CT 0 PASS DP=60;GPV=1;SPV=0.15576;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:37,5:22,2:15,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1364 chr13 91642713 . C CTT 0 PASS DP=44;GPV=1;SPV=0.025685;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,9:11,5:3,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1365 chr13 92166958 . A T 0 PASS DP=62;GPV=1;SPV=0.16667;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:3,4:3,2:0,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1366 chr13 92525437 . A AGTGTGTGTGTGT 0 PASS DP=39;GPV=1;SPV=0.11425;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:10,2:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1367 chr13 93223019 . C CT 0 PASS DP=37;GPV=1;SPV=0.0084717;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,8:5,7:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1368 chr13 93255797 . T A 0 PASS DP=71;GPV=1;SPV=9.6406e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:26,14:16,7:10,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1369 chr13 94076640 . TTGGG T 0 PASS DP=62;GPV=1;SPV=0.00060001;SS=2;SSC=32;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:22,10:11,3:11,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1370 chr13 95302342 . A AGTGTGTGT 0 PASS DP=57;GPV=1;SPV=0.00095639;SS=2;SSC=30;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:16,14:10,9:6,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1371 chr13 95602909 . G T 0 PASS DP=86;GPV=1;SPV=4.4652e-07;SS=2;SSC=63;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:26,19:14,9:12,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1372 chr13 97031769 . AAAAAAAAAAAAAAAATAATAATAATAATAATAAT A 0 PASS DP=35;GPV=1;SPV=0.038747;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,9:7,6:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1373 chr13 97408704 . C T 0 PASS DP=61;GPV=1;SPV=0.00031477;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:22,12:11,6:11,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1374 chr13 97500521 . CAA C 0 PASS DP=48;GPV=1;SPV=0.011166;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:8,9:3,6:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1375 chr13 99628396 . C T 0 PASS DP=72;GPV=1;SPV=1.6063e-06;SS=2;SSC=57;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:19,15:8,10:11,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1376 chr13 99711403 . CT C 0 PASS DP=27;GPV=1;SPV=0.077778;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:10,3:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1377 chr13 99784451 . T C 0 PASS DP=20;GPV=1;SPV=0.29167;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:4,3:1,1:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1378 chr13 101526154 . TC T 0 PASS DP=49;GPV=1;SPV=0.15876;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:24,3:13,1:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1379 chr13 101705292 . C CA 0 PASS DP=30;GPV=1;SPV=0.0078247;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,9:6,7:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1380 chr13 101779357 . G A 0 PASS DP=73;GPV=1;SPV=6.2767e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:25,13:10,8:15,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1381 chr13 102136060 . T G 0 PASS DP=72;GPV=1;SPV=5.4315e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:23,12:13,6:10,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1382 chr13 102323957 . ATGTGTG A 0 PASS DP=41;GPV=1;SPV=0.0041535;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:9,13:9,7:0,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1383 chr13 102692180 . A G 0 PASS DP=63;GPV=1;SPV=0.0027159;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:24,8:15,5:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1384 chr13 102905314 . A AT 0 PASS DP=44;GPV=1;SPV=0.017733;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:17,11:10,8:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1385 chr13 102939754 . G GTT 0 PASS DP=29;GPV=1;SPV=0.017028;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:5,6:3,4:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1386 chr13 103526253 . C CCACACA 0 PASS DP=44;GPV=1;SPV=0.040889;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,6:7,5:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1387 chr13 103768251 . C T 0 PASS DP=67;GPV=1;SPV=8.3669e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:19,14:9,6:10,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1388 chr13 104697530 . G C 0 PASS DP=81;GPV=1;SPV=1.6006e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:30,18:15,9:15,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1389 chr13 105804138 . G T 0 PASS DP=81;GPV=1;SPV=0.01102;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:37,7:21,5:16,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1390 chr13 106085301 . T TA 0 PASS DP=25;GPV=1;SPV=0.1866;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,4:6,3:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1391 chr13 107010352 . T G 0 PASS DP=76;GPV=1;SPV=2.035e-07;SS=2;SSC=66;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:18,16:14,8:4,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1392 chr13 107736223 . ACGCG A 0 PASS DP=51;GPV=1;SPV=0.047619;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:27:0,5:0,3:0,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1393 chr13 107888693 . G C 0 PASS DP=56;GPV=1;SPV=0.085027;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:32,6:15,1:17,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1394 chr13 107959959 . C T 0 PASS DP=62;GPV=1;SPV=0.085333;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:36,6:18,3:18,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1395 chr13 108658859 . C A 0 PASS DP=82;GPV=1;SPV=1.7594e-06;SS=2;SSC=57;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:26,18:16,12:10,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1396 chr13 109173980 . T G 0 PASS DP=25;GPV=1;SPV=0.0070433;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:5,10:5,5:0,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1397 chr13 110649933 . T G 0 PASS DP=25;GPV=1;SPV=0.06993;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:4,4:1,1:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1398 chr13 110724595 . CTTT C 0 PASS DP=39;GPV=1;SPV=0.011728;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,10:7,6:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1399 chr13 112465988 . G A 0 PASS DP=84;GPV=1;SPV=0.00021529;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:36,15:21,6:15,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1400 chr13 113033031 . C T 0 PASS DP=31;GPV=1;SPV=0.025986;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:10,10:2,3:8,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1401 chr13 113786629 . ATCATCACCATCATCACTGTCGTTACCC A 0 PASS DP=43;GPV=1;SPV=0.027099;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,8:4,3:12,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1402 chr13 113912799 . C G 0 PASS DP=73;GPV=1;SPV=2.6785e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:23,13:10,5:13,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1403 chr13 113956341 . G GAGT 0 PASS DP=50;GPV=1;SPV=0.026811;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,9:8,7:12,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1404 chr13 114011410 . T TGGGCGTCCC 0 PASS DP=52;GPV=1;SPV=0.0057036;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:21,8:7,2:14,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1405 chr13 114011427 . C G 0 PASS DP=56;GPV=1;SPV=0.0026611;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,9:8,2:14,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1406 chr13 114011428 . A C 0 PASS DP=54;GPV=1;SPV=0.0012555;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,10:6,3:14,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1407 chr13 114011431 . AGC A 0 PASS DP=58;GPV=1;SPV=0.0017739;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:23,10:9,3:14,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1408 chr14 18242075 . G A 0 PASS DP=39;GPV=1;SPV=0.012719;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:1,1:9,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1409 chr14 18303525 . C T 0 PASS DP=61;GPV=1;SPV=0.036972;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:28,9:16,6:12,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1410 chr14 18466529 . G A 0 PASS DP=32;GPV=1;SPV=0.0045748;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:8,11:4,6:4,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1411 chr14 18527284 . C T 0 PASS DP=67;GPV=1;SPV=0.034902;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:24,10:8,5:16,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1412 chr14 18977222 . T C 0 PASS DP=62;GPV=1;SPV=0.032166;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:28,9:17,1:11,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1413 chr14 19003629 . T G 0 PASS DP=32;GPV=1;SPV=0.13473;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:5,1:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1414 chr14 19008300 . C T 0 PASS DP=96;GPV=1;SPV=0.041213;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:42,9:19,6:23,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1415 chr14 19023348 . CCTTTCTTTCT C 0 PASS DP=43;GPV=1;SPV=0.03735;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,6:6,4:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1416 chr14 19050241 . T C 0 PASS DP=50;GPV=1;SPV=0.28678;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:19,3:14,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1417 chr14 19096492 . A G 0 PASS DP=82;GPV=1;SPV=0.044777;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:40,5:37,4:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1418 chr14 19105551 . A G 0 PASS DP=192;GPV=1;SPV=0.032429;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:106:90,16:56,12:34,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1419 chr14 19108832 . A G 0 PASS DP=57;GPV=1;SPV=0.046541;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:32,8:13,2:19,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1420 chr14 19233877 . G C 0 PASS DP=19;GPV=1;SPV=0.05418;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,4:6,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1421 chr14 19351163 . A G 0 PASS DP=18;GPV=1;SPV=0.041176;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:1,1:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1422 chr14 19390794 . A G 0 PASS DP=25;GPV=1;SPV=0.11647;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:2,1:10,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1423 chr14 19437836 . C T 0 PASS DP=42;GPV=1;SPV=0.0018327;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,9:5,3:9,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1424 chr14 19463797 . G T 0 PASS DP=26;GPV=1;SPV=0.1592;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:0,0:13,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1425 chr14 19475447 . AATTT A 0 PASS DP=143;GPV=1;SPV=0.045947;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:73:63,10:34,6:29,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1426 chr14 19510043 . A ATT 0 PASS DP=35;GPV=1;SPV=0.014666;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:4,14:1,7:3,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1427 chr14 19689768 . T G 0 PASS DP=61;GPV=1;SPV=0.0063671;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:18,12:5,4:13,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1428 chr14 19690605 . G A 0 PASS DP=55;GPV=1;SPV=0.018909;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:9,1:12,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1429 chr14 19703569 . C T 0 PASS DP=40;GPV=1;SPV=0.042412;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:11,3:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1430 chr14 20506819 . A G 0 PASS DP=50;GPV=1;SPV=0.026326;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:24,7:13,5:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1431 chr14 20975145 . G GT 0 PASS DP=26;GPV=1;SPV=0.037681;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,5:7,3:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1432 chr14 21178782 . GCA G 0 PASS DP=73;GPV=1;SPV=0.075568;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:20,2:15,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1433 chr14 21203990 . A T 0 PASS DP=69;GPV=1;SPV=9.7569e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:25,14:15,9:10,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1434 chr14 21881710 . GA G 0 PASS DP=43;GPV=1;SPV=0.021719;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:17,12:9,7:8,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1435 chr14 22665192 . C A 0 PASS DP=68;GPV=1;SPV=0.00078492;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:27,11:16,4:11,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1436 chr14 23887635 . A AGAAGGAAG 0 PASS DP=34;GPV=1;SPV=0.091949;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:11,7:5,3:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1437 chr14 23890812 . AAG A 0 PASS DP=47;GPV=1;SPV=0.018613;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:22,8:9,4:13,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1438 chr14 24505174 . T TTC 0 PASS DP=39;GPV=1;SPV=0.016422;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,9:11,7:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1439 chr14 24905596 . A T 0 PASS DP=48;GPV=1;SPV=0.0015312;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:18,11:9,4:9,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1440 chr14 25954318 . C CTT 0 PASS DP=21;GPV=1;SPV=0.041958;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:4,5:4,4:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1441 chr14 26368340 . CA C 0 PASS DP=36;GPV=1;SPV=0.16912;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,4:12,3:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1442 chr14 28510631 . C T 0 PASS DP=54;GPV=1;SPV=0.14664;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:18,1:12,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1443 chr14 29046920 . G GTA 0 PASS DP=33;GPV=1;SPV=0.0021846;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:8,11:4,5:4,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1444 chr14 29522631 . A T 0 PASS DP=72;GPV=1;SPV=0.0014163;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:31,11:16,7:15,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1445 chr14 29990494 . TATATATACATATGTATATATAC T 0 PASS DP=30;GPV=1;SPV=0.020843;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:3,2:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1446 chr14 31695345 . CT C 0 PASS DP=53;GPV=1;SPV=0.00084635;SS=2;SSC=30;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:20,12:12,6:8,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1447 chr14 32880218 . C CTTCT 0 PASS DP=30;GPV=1;SPV=0.081597;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:2,1:12,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1448 chr14 33312488 . G C 0 PASS DP=57;GPV=1;SPV=0.012731;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:25,7:14,3:11,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1449 chr14 34664149 . ATT A 0 PASS DP=44;GPV=1;SPV=0.019341;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:11,9:3,5:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1450 chr14 35792817 . G A 0 PASS DP=31;GPV=1;SPV=0.17128;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,4:9,3:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1451 chr14 37302633 . C CT 0 PASS DP=29;GPV=1;SPV=0.0056638;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:9,12:6,9:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1452 chr14 37337360 . T A 0 PASS DP=19;GPV=1;SPV=0.26923;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,2:2,1:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1453 chr14 37524565 . C CT 0 PASS DP=32;GPV=1;SPV=0.060124;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,5:9,3:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1454 chr14 37950296 . T A 0 PASS DP=66;GPV=1;SPV=0.081731;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:10,2:22,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1455 chr14 38857336 . C G 0 PASS DP=69;GPV=1;SPV=5.9786e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:23,13:14,9:9,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1456 chr14 41218417 . ATTCTTTTT A 0 PASS DP=26;GPV=1;SPV=0.12174;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:9,2:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1457 chr14 41368412 . CCT C 0 PASS DP=29;GPV=1;SPV=0.016858;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,5:7,2:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1458 chr14 41401360 . C CA 0 PASS DP=30;GPV=1;SPV=0.21886;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,5:12,3:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1459 chr14 42705264 . A T 0 PASS DP=61;GPV=1;SPV=0.15091;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:21,5:8,1:13,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1460 chr14 46648949 . C CAAA 0 PASS DP=30;GPV=1;SPV=0.25826;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:10,4:3,3:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1461 chr14 46750528 . CT C 0 PASS DP=26;GPV=1;SPV=0.008238;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,8:2,5:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1462 chr14 47771589 . G A 0 PASS DP=36;GPV=1;SPV=0.13168;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:19,6:15,2:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1463 chr14 48462905 . C T 0 PASS DP=51;GPV=1;SPV=9.3592e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:14,11:9,4:5,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1464 chr14 49570238 . G GA 0 PASS DP=39;GPV=1;SPV=0.046295;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:14,9:11,7:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1465 chr14 49643082 . CAAA C 0 PASS DP=37;GPV=1;SPV=0.0041547;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:13,11:7,9:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1466 chr14 49919773 . A G 0 PASS DP=20;GPV=1;SPV=0.021672;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,5:3,2:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1467 chr14 50592929 . A T 0 PASS DP=69;GPV=1;SPV=0.041383;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:23,7:12,2:11,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1468 chr14 51077386 . G GTT 0 PASS DP=23;GPV=1;SPV=0.051084;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,5:6,2:1,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1469 chr14 51365694 . C T 0 PASS DP=62;GPV=1;SPV=0.022022;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,5:11,2:14,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1470 chr14 53080718 . T TTCC 0 PASS DP=28;GPV=1;SPV=0.049428;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,7:6,6:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1471 chr14 53229696 . A T 0 PASS DP=48;GPV=1;SPV=0.011884;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,5:10,4:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1472 chr14 53949884 . T A 0 PASS DP=56;GPV=1;SPV=0.17982;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:18,3:15,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1473 chr14 54852874 . C T 0 PASS DP=66;GPV=1;SPV=0.01322;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:30,7:14,4:16,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1474 chr14 55738029 . CT C 0 PASS DP=63;GPV=1;SPV=0.077856;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:14,1:16,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1475 chr14 55741660 . T C 0 PASS DP=26;GPV=1;SPV=0.33333;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:4,2:0,0:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1476 chr14 57311732 . T TC 0 PASS DP=20;GPV=1;SPV=0.071429;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:2,4:1,1:1,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1477 chr14 62011872 . T TACACAC 0 PASS DP=40;GPV=1;SPV=0.023562;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:11,3:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1478 chr14 62011928 . T C 0 PASS DP=52;GPV=1;SPV=0.055222;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:16,2:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1479 chr14 63088543 . A AAT 0 PASS DP=67;GPV=1;SPV=0.01699;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:26,11:13,4:13,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1480 chr14 63116699 . A AT 0 PASS DP=37;GPV=1;SPV=0.004133;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:10,13:6,9:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1481 chr14 63422729 . TA T 0 PASS DP=32;GPV=1;SPV=0.023031;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,7:11,5:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1482 chr14 63566276 . G A 0 PASS DP=30;GPV=1;SPV=0.060124;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,5:4,2:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1483 chr14 63627152 . T A 0 PASS DP=42;GPV=1;SPV=0.25455;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:5,4:2,3:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1484 chr14 64261239 . C CT 0 PASS DP=37;GPV=1;SPV=0.010989;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:2,9:0,8:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1485 chr14 64463642 . G A 0 PASS DP=59;GPV=1;SPV=0.013657;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:11,6:5,3:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1486 chr14 64923273 . C CAAAAAAAAAAAA 0 PASS DP=40;GPV=1;SPV=0.069853;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,5:6,4:11,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1487 chr14 65016920 . G GT 0 PASS DP=38;GPV=1;SPV=0.031946;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,8:13,4:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1488 chr14 65102741 . GGC G 0 PASS DP=16;GPV=1;SPV=0.038462;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:4,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1489 chr14 65575579 . CCTT C 0 PASS DP=29;GPV=1;SPV=0.076628;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:2,1:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1490 chr14 66811561 . G A 0 PASS DP=62;GPV=1;SPV=0.080042;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:18,4:5,1:13,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1491 chr14 66841011 . A G 0 PASS DP=31;GPV=1;SPV=0.015732;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:3,1:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1492 chr14 67022567 . T G 0 PASS DP=32;GPV=1;SPV=0.025708;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,5:4,1:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1493 chr14 67382912 . T C 0 PASS DP=57;GPV=1;SPV=0.046149;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:24,7:10,3:14,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1494 chr14 68570891 . ACACACATG A 0 PASS DP=62;GPV=1;SPV=0.036704;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:13,2:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1495 chr14 69879448 . C A 0 PASS DP=83;GPV=1;SPV=1.6852e-08;SS=2;SSC=77;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:20,20:14,8:6,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1496 chr14 70113003 . A ATTGTATTCTGAGGTTCTGGGTGGACTTGAAC 0 PASS DP=44;GPV=1;SPV=0.03818;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,5:7,3:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1497 chr14 70709721 . A G 0 PASS DP=66;GPV=1;SPV=0.00038049;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:26,14:12,9:14,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1498 chr14 71898691 . C T 0 PASS DP=57;GPV=1;SPV=0.020985;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:22,12:8,4:14,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1499 chr14 72024278 . TAACAGTA T 0 PASS DP=75;GPV=1;SPV=0.0022884;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:29,8:21,4:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1500 chr14 72481805 . CTT C 0 PASS DP=36;GPV=1;SPV=0.01393;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,6:5,2:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1501 chr14 72874115 . A G 0 PASS DP=48;GPV=1;SPV=0.037117;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:21,16:8,10:13,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1502 chr14 73278745 . T C 0 PASS DP=43;GPV=1;SPV=0.025708;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:11,5:5,2:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1503 chr14 73350074 . T TACAC 0 PASS DP=43;GPV=1;SPV=0.0079902;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:12,11:8,9:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1504 chr14 73352433 . TAC T 0 PASS DP=22;GPV=1;SPV=0.049536;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:4,5:4,2:0,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1505 chr14 73385496 . C CT 0 PASS DP=22;GPV=1;SPV=0.040248;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,6:5,5:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1506 chr14 73440198 . T C 0 PASS DP=57;GPV=1;SPV=0.35897;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:6,2:3,1:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1507 chr14 74159574 . T G 0 PASS DP=43;GPV=1;SPV=0.17651;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:26,5:16,3:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1508 chr14 74325449 . AC A 0 PASS DP=56;GPV=1;SPV=0.052719;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:27,5:13,2:14,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1509 chr14 74401689 . G T 0 PASS DP=85;GPV=1;SPV=4.9508e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:30,13:13,5:17,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1510 chr14 74427118 . C CTT 0 PASS DP=33;GPV=1;SPV=0.091143;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,6:8,2:9,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1511 chr14 75235381 . CA C 0 PASS DP=31;GPV=1;SPV=0.04735;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:8,4:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1512 chr14 76113654 . A C 0 PASS DP=58;GPV=1;SPV=0.0018324;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:24,11:14,5:10,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1513 chr14 76445466 . C CAA 0 PASS DP=20;GPV=1;SPV=0.068627;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,4:6,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1514 chr14 76564798 . G A 0 PASS DP=30;GPV=1;SPV=0.19231;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:4,2:4,2:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1515 chr14 76926439 . A G 0 PASS DP=58;GPV=1;SPV=0.0018191;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:13,9:6,1:7,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1516 chr14 77168290 . CA C 0 PASS DP=34;GPV=1;SPV=0.10008;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,6:14,5:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1517 chr14 79376267 . C T 0 PASS DP=23;GPV=1;SPV=0.41667;SS=2;SSC=3;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:4,2:0,1:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1518 chr14 79803901 . A G 0 PASS DP=56;GPV=1;SPV=0.23077;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:5,2:1,1:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1519 chr14 80274525 . T A 0 PASS DP=45;GPV=1;SPV=0.17679;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:16,4:8,2:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1520 chr14 81572257 . T C 0 PASS DP=18;GPV=1;SPV=0.38182;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,2:1,1:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1521 chr14 83100850 . TC T 0 PASS DP=30;GPV=1;SPV=0.26374;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:7,5:1,3:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1522 chr14 85889810 . C G 0 PASS DP=17;GPV=1;SPV=0.042986;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:3,5:2,2:1,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1523 chr14 87048226 . A C 0 PASS DP=61;GPV=1;SPV=0.38182;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:5,2:2,1:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1524 chr14 88592491 . CTT C 0 PASS DP=34;GPV=1;SPV=0.049017;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,6:5,4:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1525 chr14 88759685 . T TAAAAAAA 0 PASS DP=35;GPV=1;SPV=0.0084353;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,5:5,3:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1526 chr14 90802969 . T TA 0 PASS DP=60;GPV=1;SPV=0.014951;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:24,16:10,8:14,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1527 chr14 91943401 . C T 0 PASS DP=49;GPV=1;SPV=0.064803;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:26,6:16,3:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1528 chr14 92351236 . G GCGCGCACACACACACACACACACACA 0 PASS DP=37;GPV=1;SPV=0.031813;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,4:4,3:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1529 chr14 92896194 . TA T 0 PASS DP=50;GPV=1;SPV=0.041917;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:12,9:10,3:2,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1530 chr14 93484905 . G T 0 PASS DP=66;GPV=1;SPV=1.2103e-05;SS=2;SSC=49;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:20,15:13,9:7,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1531 chr14 94864180 . A AAG 0 PASS DP=25;GPV=1;SPV=0.11053;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,2:1,1:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1532 chr14 95122959 . C CAAAGAAAGAAAG 0 PASS DP=40;GPV=1;SPV=0.004158;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,7:9,4:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1533 chr14 95744395 . ATGTGTGTG A 0 PASS DP=37;GPV=1;SPV=0.0038647;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:7,7:1,4:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1534 chr14 95843649 . CA C 0 PASS DP=46;GPV=1;SPV=0.19282;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:13,1:14,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1535 chr14 96715737 . T A 0 PASS DP=24;GPV=1;SPV=0.052941;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,4:2,3:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1536 chr14 97067392 . T G 0 PASS DP=48;GPV=1;SPV=0.034106;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:11,9:4,5:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1537 chr14 97154229 . T C 0 PASS DP=28;GPV=1;SPV=0.1893;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:1,0:14,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1538 chr14 97405405 . TAA T 0 PASS DP=48;GPV=1;SPV=0.0060449;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:17,15:13,5:4,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1539 chr14 97514252 . CTTTT C 0 PASS DP=34;GPV=1;SPV=0.083578;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:3,1:12,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1540 chr14 97788367 . A T 0 PASS DP=37;GPV=1;SPV=0.032967;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:23:1,10:1,1:0,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1541 chr14 98693319 . A T 0 PASS DP=66;GPV=1;SPV=0.0012048;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:26,10:13,6:13,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1542 chr14 99107972 . CT C 0 PASS DP=28;GPV=1;SPV=0.1893;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:8,3:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1543 chr14 99790865 . C T 0 PASS DP=39;GPV=1;SPV=0.13408;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,4:8,2:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1544 chr14 100546780 . G A 0 PASS DP=65;GPV=1;SPV=0.062457;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:20,5:12,3:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1545 chr14 100578856 . C CTT 0 PASS DP=34;GPV=1;SPV=0.034547;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,7:8,6:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1546 chr14 100770434 . G A 0 PASS DP=70;GPV=1;SPV=0.00083564;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:23,8:12,1:11,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1547 chr14 100843833 . GT G 0 PASS DP=25;GPV=1;SPV=0.037681;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:7,10:3,6:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1548 chr14 101724296 . T TC 0 PASS DP=44;GPV=1;SPV=0.045822;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:11,9:6,5:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1549 chr14 101724298 . T A 0 PASS DP=44;GPV=1;SPV=0.049571;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:11,8:7,5:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1550 chr14 101724305 . C CTA 0 PASS DP=48;GPV=1;SPV=0.016188;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,11:9,7:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1551 chr14 101724481 . A ATG 0 PASS DP=63;GPV=1;SPV=0.00949;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:15,7:6,2:9,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1552 chr14 101724601 . T C 0 PASS DP=45;GPV=1;SPV=0.020802;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:7,3:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1553 chr14 101725015 . TAC T 0 PASS DP=23;GPV=1;SPV=0.15415;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:6,1:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1554 chr14 102228697 . C CA 0 PASS DP=44;GPV=1;SPV=0.037623;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:6,9:3,8:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1555 chr14 102293702 . A C 0 PASS DP=34;GPV=1;SPV=0.080745;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:9,4:4,1:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1556 chr14 102369784 . AAC A 0 PASS DP=60;GPV=1;SPV=0.017995;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,5:12,2:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1557 chr14 103301836 . C CTT 0 PASS DP=46;GPV=1;SPV=0.011625;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:4,12:2,10:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1558 chr14 103346259 . C CT 0 PASS DP=30;GPV=1;SPV=0.023788;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,8:3,6:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1559 chr14 104049116 . A G 0 PASS DP=57;GPV=1;SPV=0.077195;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:18,5:9,3:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1560 chr14 104872401 . GCGTGGGTGTGC G 0 PASS DP=35;GPV=1;SPV=0.074026;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:13,2:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1561 chr14 105561151 . ACCCTGTC A 0 PASS DP=41;GPV=1;SPV=0.10493;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:1,2:19,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1562 chr14 105565695 . G A 0 PASS DP=91;GPV=1;SPV=0.0057362;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:39,15:32,2:7,13
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1563 chr14 105698357 . T G 0 PASS DP=58;GPV=1;SPV=0.0081718;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:20,12:8,7:12,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1564 chr14 105759956 . CT C 0 PASS DP=92;GPV=1;SPV=0.011402;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:43,7:21,2:22,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1565 chr14 105766139 . C G 0 PASS DP=128;GPV=1;SPV=0.00011602;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:76:60,16:22,7:38,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1566 chr14 105992391 . T TCTTTCTTTCTTTC 0 PASS DP=47;GPV=1;SPV=0.031608;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,7:9,1:6,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1567 chr14 106309123 . T G 0 PASS DP=51;GPV=1;SPV=0.019439;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:16,6:10,3:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1568 chr14 106331794 . A G 0 PASS DP=41;GPV=1;SPV=0.029934;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,6:6,5:12,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1569 chr15 17069468 . CT C 0 PASS DP=86;GPV=1;SPV=0.012263;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:34,8:19,3:15,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1570 chr15 17072076 . C T 0 PASS DP=100;GPV=1;SPV=0.01199;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:48,11:19,5:29,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1571 chr15 17078615 . T A 0 PASS DP=134;GPV=1;SPV=0.03685;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:78:64,13:31,6:33,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1572 chr15 18359793 . A C 0 PASS DP=33;GPV=1;SPV=0.046816;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:12,8:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1573 chr15 18750174 . C T 0 PASS DP=121;GPV=1;SPV=0.042611;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:63:51,12:11,5:40,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1574 chr15 18845299 . A C 0 PASS DP=506;GPV=1;SPV=0.0098083;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:282:250,29:168,15:82,14
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1575 chr15 19417500 . G A 0 PASS DP=171;GPV=1;SPV=0.0027914;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:97:87,10:19,3:68,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1576 chr15 19572075 . G C 0 PASS DP=48;GPV=1;SPV=0.0307;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:22,6:16,5:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1577 chr15 19904285 . CT C 0 PASS DP=100;GPV=1;SPV=0.04792;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:50,8:28,2:22,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1578 chr15 19928272 . G A 0 PASS DP=81;GPV=1;SPV=0.032378;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:31,6:19,4:12,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1579 chr15 19957403 . T G 0 PASS DP=69;GPV=1;SPV=0.00091899;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:28,11:16,7:12,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1580 chr15 20012291 . G A 0 PASS DP=34;GPV=1;SPV=0.10008;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,6:7,2:11,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1581 chr15 20037701 . G A 0 PASS DP=54;GPV=1;SPV=0.11371;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:12,2:16,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1582 chr15 20099253 . T TACA 0 PASS DP=70;GPV=1;SPV=0.0070608;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:30,12:11,3:19,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1583 chr15 20223076 . CA C 0 PASS DP=51;GPV=1;SPV=0.016633;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:17,9:6,7:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1584 chr15 20249734 . C T 0 PASS DP=140;GPV=1;SPV=0.030276;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:80:63,17:39,5:24,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1585 chr15 20253720 . C CTATT 0 PASS DP=145;GPV=1;SPV=0.016793;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:73:58,13:25,9:33,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1586 chr15 20259214 . AG A 0 PASS DP=84;GPV=1;SPV=0.029347;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:33,9:21,5:12,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1587 chr15 20280383 . G A 0 PASS DP=223;GPV=1;SPV=0.041351;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:131:106,25:36,15:70,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1588 chr15 20286892 . A G 0 PASS DP=133;GPV=1;SPV=0.0067522;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:73:54,19:27,10:27,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1589 chr15 20286894 . ATATG A 0 PASS DP=129;GPV=1;SPV=0.0016863;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:68:47,20:24,11:23,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1590 chr15 20288707 . A AT 0 PASS DP=130;GPV=1;SPV=0.015652;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:84:51,15:27,12:24,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1591 chr15 20292295 . G A 0 PASS DP=183;GPV=1;SPV=0.012558;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:107:91,16:48,7:43,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1592 chr15 20335036 . T A 0 PASS DP=143;GPV=1;SPV=0.0040471;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:82:62,20:19,4:43,16
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1593 chr15 20369449 . T C 0 PASS DP=162;GPV=1;SPV=0.0020434;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:96:71,25:37,11:34,14
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1594 chr15 20503316 . CT C 0 PASS DP=49;GPV=1;SPV=0.1121;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:18,3:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1595 chr15 20541692 . T A 0 PASS DP=25;GPV=1;SPV=0.18814;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:13,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1596 chr15 20550505 . T C 0 PASS DP=176;GPV=1;SPV=0.0034318;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:104:78,26:39,13:39,13
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1597 chr15 20551970 . G A 0 PASS DP=131;GPV=1;SPV=0.030477;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:76:67,9:30,5:37,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1598 chr15 20555222 . GTATATGTGTAAATA G 0 PASS DP=90;GPV=1;SPV=0.041853;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:39,9:28,5:11,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1599 chr15 20655655 . T C 0 PASS DP=120;GPV=1;SPV=0.0018747;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:65:46,19:21,10:25,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1600 chr15 20742744 . G A 0 PASS DP=22;GPV=1;SPV=0.048872;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:6,2:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1601 chr15 20761130 . G A 0 PASS DP=29;GPV=1;SPV=0.16319;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:11,3:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1602 chr15 21045807 . A G 0 PASS DP=47;GPV=1;SPV=0.017873;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,6:7,5:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1603 chr15 21046013 . C T 0 PASS DP=53;GPV=1;SPV=0.020485;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:26,8:13,3:13,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1604 chr15 21070503 . G A 0 PASS DP=29;GPV=1;SPV=0.0066692;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,5:4,1:3,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1605 chr15 21123418 . A G 0 PASS DP=18;GPV=1;SPV=0.23529;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:7,2:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1606 chr15 21133616 . C G 0 PASS DP=20;GPV=1;SPV=0.073684;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:6,3:0,1:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1607 chr15 21143778 . T C 0 PASS DP=66;GPV=1;SPV=0.043884;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:26,6:11,3:15,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1608 chr15 21181101 . T G 0 PASS DP=27;GPV=1;SPV=0.13561;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:7,3:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1609 chr15 21251752 . C G 0 PASS DP=86;GPV=1;SPV=0.035464;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:36,9:18,4:18,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1610 chr15 21253620 . A G 0 PASS DP=66;GPV=1;SPV=0.04887;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:29,7:18,1:11,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1611 chr15 21302947 . G T 0 PASS DP=47;GPV=1;SPV=0.098394;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:9,3:14,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1612 chr15 21372850 . C G 0 PASS DP=76;GPV=1;SPV=0.045913;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:16,3:16,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1613 chr15 21441761 . T C 0 PASS DP=126;GPV=1;SPV=0.046139;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:70:55,15:27,7:28,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1614 chr15 21496299 . C T 0 PASS DP=56;GPV=1;SPV=0.0026985;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:19,11:11,4:8,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1615 chr15 21574589 . C G 0 PASS DP=27;GPV=1;SPV=0.041809;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:6,1:5,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1616 chr15 22084246 . G A 0 PASS DP=32;GPV=1;SPV=0.050612;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:7,3:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1617 chr15 22444547 . G T 0 PASS DP=48;GPV=1;SPV=0.026352;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,10:9,5:11,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1618 chr15 22574358 . G GTGAAGGGTGGC 0 PASS DP=81;GPV=1;SPV=0.0035182;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:31,14:15,5:16,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1619 chr15 22624526 . C CAAA 0 PASS DP=39;GPV=1;SPV=0.080745;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,4:6,3:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1620 chr15 22676559 . A G 0 PASS DP=52;GPV=1;SPV=0.0093849;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,10:11,9:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1621 chr15 22801507 . CTT C 0 PASS DP=28;GPV=1;SPV=0.036522;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,6:4,4:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1622 chr15 22930389 . C CAA 0 PASS DP=26;GPV=1;SPV=0.04958;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,6:9,4:0,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1623 chr15 24484100 . A T 0 PASS DP=48;GPV=1;SPV=0.048872;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:8,9:7,2:1,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1624 chr15 24916499 . A G 0 PASS DP=70;GPV=1;SPV=3.1103e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:22,13:7,3:15,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1625 chr15 25028250 . C CAAAAAA 0 PASS DP=51;GPV=1;SPV=0.037457;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,9:10,8:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1626 chr15 25977620 . TTGTGTG T 0 PASS DP=36;GPV=1;SPV=0.18039;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:14,1:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1627 chr15 26142375 . CTT C 0 PASS DP=37;GPV=1;SPV=0.058687;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:1,0:14,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1628 chr15 26251825 . T A 0 PASS DP=33;GPV=1;SPV=0.23077;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:6,3:2,2:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1629 chr15 26326358 . CAAA C 0 PASS DP=29;GPV=1;SPV=0.037648;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:5,5:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1630 chr15 26469181 . A AAAGAAAGG 0 PASS DP=48;GPV=1;SPV=0.047937;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:18,10:12,8:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1631 chr15 27406472 . G T 0 PASS DP=69;GPV=1;SPV=6.2206e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:22,12:16,5:6,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1632 chr15 28224134 . T TACACACACACAC 0 PASS DP=45;GPV=1;SPV=0.0062312;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,8:11,6:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1633 chr15 28419072 . A G 0 PASS DP=198;GPV=1;SPV=0.0051507;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:121:104,17:85,14:19,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1634 chr15 28463372 . C CAAA 0 PASS DP=112;GPV=1;SPV=0.037801;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:68:42,14:19,8:23,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1635 chr15 28566577 . G A 0 PASS DP=24;GPV=1;SPV=0.12846;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:11,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1636 chr15 28589665 . G C 0 PASS DP=54;GPV=1;SPV=0.02299;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:24,6:16,1:8,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1637 chr15 30141449 . A G 0 PASS DP=42;GPV=1;SPV=0.18293;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:17,3:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1638 chr15 30320597 . A G 0 PASS DP=16;GPV=1;SPV=0.23333;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:0,0:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1639 chr15 30376095 . G A 0 PASS DP=78;GPV=1;SPV=0.054928;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:21,4:14,3:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1640 chr15 30515836 . G A 0 PASS DP=56;GPV=1;SPV=0.063892;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:19,7:11,5:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1641 chr15 30929816 . ATAT A 0 PASS DP=21;GPV=1;SPV=0.082707;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:5,1:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1642 chr15 31195376 . C T 0 PASS DP=38;GPV=1;SPV=0.037811;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:15,11:5,3:10,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1643 chr15 31697225 . C T 0 PASS DP=46;GPV=1;SPV=0.031197;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,8:10,4:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1644 chr15 32281297 . G C 0 PASS DP=21;GPV=1;SPV=0.082707;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:8,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1645 chr15 32440237 . CCCA C 0 PASS DP=46;GPV=1;SPV=0.022707;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:23,10:2,1:21,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1646 chr15 32513704 . GTTCTGGAGGCTGCCCAACTTGTGAATTGT G 0 PASS DP=41;GPV=1;SPV=0.1733;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:11,3:12,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1647 chr15 32877887 . T A 0 PASS DP=57;GPV=1;SPV=4.8916e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:17,13:11,4:6,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1648 chr15 33794043 . C T 0 PASS DP=40;GPV=1;SPV=0.13842;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:9,3:12,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1649 chr15 33794044 . A AT 0 PASS DP=35;GPV=1;SPV=0.14626;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,4:8,3:9,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1650 chr15 33794051 . TA T 0 PASS DP=36;GPV=1;SPV=0.18039;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:9,3:11,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1651 chr15 34177633 . T TAAAAAAAAAAAAA 0 PASS DP=22;GPV=1;SPV=0.069231;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:5,4:3,2:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1652 chr15 34577507 . TACACAC T 0 PASS DP=26;GPV=1;SPV=0.074661;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:6,5:0,3:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1653 chr15 34671303 . G A 0 PASS DP=46;GPV=1;SPV=0.15775;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:15,5:9,1:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1654 chr15 36015090 . T G 0 PASS DP=84;GPV=1;SPV=6.3972e-07;SS=2;SSC=61;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:25,18:12,9:13,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1655 chr15 36457108 . G GCACA 0 PASS DP=34;GPV=1;SPV=0.17876;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:14,3:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1656 chr15 38542913 . ATATG A 0 PASS DP=45;GPV=1;SPV=0.15941;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:14,1:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1657 chr15 39075207 . A G 0 PASS DP=43;GPV=1;SPV=0.062714;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:12,9:5,5:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1658 chr15 39123538 . C CAA 0 PASS DP=29;GPV=1;SPV=0.048889;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,4:2,3:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1659 chr15 41289671 . AAATAT A 0 PASS DP=23;GPV=1;SPV=0.22222;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:3,2:3,2:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1660 chr15 42369870 . C T 0 PASS DP=47;GPV=1;SPV=0.077778;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:11,4:9,1:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1661 chr15 42734779 . C CT 0 PASS DP=33;GPV=1;SPV=0.049571;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:3,3:8,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1662 chr15 46401794 . C CA 0 PASS DP=52;GPV=1;SPV=0.043306;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:24,13:9,4:15,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1663 chr15 46728037 . A T 0 PASS DP=46;GPV=1;SPV=0.00080188;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,10:8,2:7,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1664 chr15 48220131 . G A 0 PASS DP=34;GPV=1;SPV=0.21839;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,4:8,2:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1665 chr15 49525667 . T C 0 PASS DP=26;GPV=1;SPV=0.12121;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:3,3:2,2:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1666 chr15 50635685 . AAAAAAAG A 0 PASS DP=24;GPV=1;SPV=0.31818;SS=2;SSC=4;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:5,2:1,1:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1667 chr15 50891330 . C A 0 PASS DP=66;GPV=1;SPV=0.00024009;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:27,19:14,12:13,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1668 chr15 51175616 . G T 0 PASS DP=36;GPV=1;SPV=0.14093;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:10,2:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1669 chr15 52612504 . T C 0 PASS DP=32;GPV=1;SPV=0.3;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:7,2:6,1:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1670 chr15 54250753 . T C 0 PASS DP=27;GPV=1;SPV=0.091659;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,6:6,4:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1671 chr15 54442250 . C CTT 0 PASS DP=46;GPV=1;SPV=0.17984;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:11,10:9,9:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1672 chr15 54842393 . CGT C 0 PASS DP=43;GPV=1;SPV=0.01567;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,10:16,7:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1673 chr15 55744263 . G C 0 PASS DP=57;GPV=1;SPV=1.3655e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:14,12:4,2:10,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1674 chr15 55744264 . G T 0 PASS DP=57;GPV=1;SPV=4.2481e-06;SS=2;SSC=53;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:13,13:4,3:9,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1675 chr15 57426612 . AT A 0 PASS DP=41;GPV=1;SPV=0.0050173;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:13,15:6,9:7,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1676 chr15 57738279 . ATT A 0 PASS DP=49;GPV=1;SPV=0.048951;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:3,6:3,3:0,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1677 chr15 58283455 . C CA 0 PASS DP=33;GPV=1;SPV=0.0045748;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:8,12:4,8:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1678 chr15 59600806 . AT A 0 PASS DP=59;GPV=1;SPV=0.046347;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:23,6:10,1:13,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1679 chr15 59600919 . A AT 0 PASS DP=60;GPV=1;SPV=0.043416;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:19,8:11,3:8,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1680 chr15 60613696 . C CTGTG 0 PASS DP=33;GPV=1;SPV=0.036522;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,6:5,4:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1681 chr15 60763065 . A ATTTTT 0 PASS DP=22;GPV=1;SPV=0.16725;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:9,4:1,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1682 chr15 61456541 . A C 0 PASS DP=66;GPV=1;SPV=0.00069544;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:29,17:10,10:19,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1683 chr15 62742024 . G T 0 PASS DP=35;GPV=1;SPV=0.011312;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:4,8:2,5:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1684 chr15 62750256 . T G 0 PASS DP=68;GPV=1;SPV=0.00018832;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:26,14:13,9:13,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1685 chr15 63202277 . C CA 0 PASS DP=68;GPV=1;SPV=0.00093315;SS=2;SSC=30;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:19,16:7,10:12,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1686 chr15 63789151 . T C 0 PASS DP=34;GPV=1;SPV=0.030455;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:5,4:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1687 chr15 64645012 . C T 0 PASS DP=30;GPV=1;SPV=0.011166;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,9:0,1:8,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1688 chr15 64953802 . C CT 0 PASS DP=32;GPV=1;SPV=0.029135;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,9:6,2:8,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1689 chr15 65142928 . CT C 0 PASS DP=32;GPV=1;SPV=0.038324;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:8,2:3,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1690 chr15 66079512 . C T 0 PASS DP=21;GPV=1;SPV=0.082707;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:1,1:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1691 chr15 66966775 . T TTTTTATTTTATTTTATTTTATTTTA 0 PASS DP=27;GPV=1;SPV=0.043344;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,4:1,2:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1692 chr15 67045069 . C CTATTTATTTATT 0 PASS DP=29;GPV=1;SPV=0.040741;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,4:3,2:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1693 chr15 67418577 . C CT 0 PASS DP=24;GPV=1;SPV=0.037185;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:6,4:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1694 chr15 68798260 . TCTCCAGTGTTACTATTCAGA T 0 PASS DP=56;GPV=1;SPV=0.02791;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:26,6:15,4:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1695 chr15 68798282 . A AATT 0 PASS DP=59;GPV=1;SPV=0.028465;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,5:14,4:11,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1696 chr15 68798283 . C G 0 PASS DP=61;GPV=1;SPV=0.019947;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:27,6:15,4:12,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1697 chr15 68883630 . T C 0 PASS DP=51;GPV=1;SPV=0.080194;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:26,5:14,3:12,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1698 chr15 68939156 . G T 0 PASS DP=67;GPV=1;SPV=2.3706e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:21,14:13,4:8,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1699 chr15 69255138 . G T 0 PASS DP=60;GPV=1;SPV=0.021615;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:29,7:15,5:14,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1700 chr15 70792750 . C CTTTCTT 0 PASS DP=44;GPV=1;SPV=0.023574;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:10,8:2,3:8,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1701 chr15 70827305 . C CT 0 PASS DP=28;GPV=1;SPV=0.013375;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,9:6,7:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1702 chr15 72130557 . A AT 0 PASS DP=29;GPV=1;SPV=0.22398;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,4:9,3:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1703 chr15 74071858 . A C 0 PASS DP=311;GPV=1;SPV=0.040856;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:168:142,26:54,11:88,15
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1704 chr15 74818014 . G GA 0 PASS DP=49;GPV=1;SPV=0.041183;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:20,8:14,7:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1705 chr15 75090710 . C CT 0 PASS DP=23;GPV=1;SPV=0.006192;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,5:1,4:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1706 chr15 77738758 . A G 0 PASS DP=46;GPV=1;SPV=0.0034214;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,10:8,7:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1707 chr15 77743790 . G A 0 PASS DP=41;GPV=1;SPV=0.02531;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,11:10,6:6,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1708 chr15 77951781 . G A 0 PASS DP=71;GPV=1;SPV=0.011899;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:36,9:14,4:22,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1709 chr15 78909032 . G GTTT 0 PASS DP=38;GPV=1;SPV=0.018778;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:5,10:2,7:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1710 chr15 79828226 . C A 0 PASS DP=73;GPV=1;SPV=0.12934;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:26,4:11,1:15,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1711 chr15 80152658 . A G 0 PASS DP=18;GPV=1;SPV=0.54545;SS=2;SSC=2;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:7,2:7,2:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1712 chr15 81692901 . A T 0 PASS DP=31;GPV=1;SPV=0.17128;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,4:9,3:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1713 chr15 82307797 . GGTAAAGGAGTGGGAGAGCTTTCAGGGAACGGCAGAACC G 0 PASS DP=53;GPV=1;SPV=0.070174;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:27,5:13,4:14,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1714 chr15 82488442 . A AG 0 PASS DP=66;GPV=1;SPV=0.04422;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:14,7:10,5:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1715 chr15 83229856 . A G 0 PASS DP=49;GPV=1;SPV=0.041793;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:10,3:9,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1716 chr15 83874351 . G A 0 PASS DP=69;GPV=1;SPV=1.995e-06;SS=2;SSC=57;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:21,21:6,4:15,17
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1717 chr15 83883142 . C T 0 PASS DP=48;GPV=1;SPV=0.046683;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,5:11,3:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1718 chr15 85359195 . C CAAAAAA 0 PASS DP=26;GPV=1;SPV=0.069881;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,6:5,4:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1719 chr15 86396245 . A G 0 PASS DP=63;GPV=1;SPV=0.068627;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:6,4:2,1:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1720 chr15 90374581 . C CTT 0 PASS DP=26;GPV=1;SPV=0.012749;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,6:5,5:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1721 chr15 91655974 . T A 0 PASS DP=60;GPV=1;SPV=0.001113;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:26,18:13,11:13,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1722 chr15 92162133 . CT C 0 PASS DP=21;GPV=1;SPV=0.014757;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,7:4,6:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1723 chr15 92850801 . ATT A 0 PASS DP=43;GPV=1;SPV=0.037194;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,7:11,5:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1724 chr15 92874879 . G A 0 PASS DP=58;GPV=1;SPV=6.3565e-06;SS=2;SSC=51;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:14,13:6,5:8,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1725 chr15 94213325 . TA T 0 PASS DP=42;GPV=1;SPV=0.045366;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:18,11:10,3:8,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1726 chr15 95268394 . T TTG 0 PASS DP=55;GPV=1;SPV=0.0092175;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:16,13:10,6:6,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1727 chr15 95309358 . T C 0 PASS DP=46;GPV=1;SPV=0.040221;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:22,6:11,1:11,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1728 chr15 95439722 . C CA 0 PASS DP=39;GPV=1;SPV=0.0032114;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,8:7,7:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1729 chr15 95762823 . T G 0 PASS DP=56;GPV=1;SPV=0.0010521;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:23,14:14,8:9,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1730 chr15 95796709 . A AG 0 PASS DP=36;GPV=1;SPV=0.18039;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:16,3:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1731 chr15 96472595 . GA G 0 PASS DP=55;GPV=1;SPV=0.015385;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:13,14:6,11:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1732 chr15 97124918 . AAAAAT A 0 PASS DP=42;GPV=1;SPV=0.040348;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,6:8,3:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1733 chr15 97336448 . T TTC 0 PASS DP=41;GPV=1;SPV=0.15847;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:24,5:13,2:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1734 chr15 98467626 . A AAAAATGTTT 0 PASS DP=58;GPV=1;SPV=0.0020977;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:17,14:7,5:10,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1735 chr15 98537039 . AAAGGGAAGGGAAGGGAAGGG A 0 PASS DP=40;GPV=1;SPV=0.038248;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:8,5:7,4:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1736 chr15 98593638 . C CA 0 PASS DP=34;GPV=1;SPV=0.023574;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,8:7,7:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1737 chr15 99319659 . G GTT 0 PASS DP=58;GPV=1;SPV=3.0636e-05;SS=2;SSC=45;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:13,21:7,10:6,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1738 chr15 99973989 . C CAGAATAAAGCCTTT 0 PASS DP=57;GPV=1;SPV=0.040223;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:26,9:10,3:16,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1739 chr15 100458206 . T A 0 PASS DP=78;GPV=1;SPV=2.9336e-07;SS=2;SSC=65;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:21,18:9,11:12,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1740 chr15 100467837 . GTA G 0 PASS DP=52;GPV=1;SPV=0.1121;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:25,4:16,2:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1741 chr15 100667845 . G A 0 PASS DP=86;GPV=1;SPV=0.00016163;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:34,13:21,8:13,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1742 chr15 100939255 . A G 0 PASS DP=61;GPV=1;SPV=8.2383e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:22,19:9,6:13,13
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1743 chr15 101757944 . C T 0 PASS DP=51;GPV=1;SPV=0.059824;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:7,3:15,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1744 chr15 101908220 . T TCC 0 PASS DP=50;GPV=1;SPV=0.010101;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:26:0,7:0,3:0,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1745 chr16 329272 . CAAAAA C 0 PASS DP=32;GPV=1;SPV=0.048122;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:7,8:2,4:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1746 chr16 837840 . TTTC T 0 PASS DP=40;GPV=1;SPV=0.004158;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,8:5,7:9,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1747 chr16 859186 . T A 0 PASS DP=62;GPV=1;SPV=0.028067;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:23,9:13,5:10,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1748 chr16 917480 . C T 0 PASS DP=63;GPV=1;SPV=0.00072423;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:23,10:15,6:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1749 chr16 1217108 . G A 0 PASS DP=97;GPV=1;SPV=0.015797;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:48,7:27,3:21,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1750 chr16 2795130 . A G 0 PASS DP=28;GPV=1;SPV=0.013285;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:4,2:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1751 chr16 2851650 . C CAAAAAAAAAA 0 PASS DP=36;GPV=1;SPV=0.029941;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,9:8,8:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1752 chr16 3814215 . CTGTG C 0 PASS DP=33;GPV=1;SPV=0.00070363;SS=2;SSC=31;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:3,12:3,8:0,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1753 chr16 4211669 . G A 0 PASS DP=48;GPV=1;SPV=0.0264;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,9:6,5:10,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1754 chr16 4584354 . A ATTTTTTTTTTTTTT 0 PASS DP=24;GPV=1;SPV=0.074661;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,6:1,1:5,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1755 chr16 4809188 . GT G 0 PASS DP=30;GPV=1;SPV=0.037185;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:9,9:4,8:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1756 chr16 5203355 . T C 0 PASS DP=38;GPV=1;SPV=0.023024;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,8:12,3:1,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1757 chr16 5669422 . C CT 0 PASS DP=32;GPV=1;SPV=0.018307;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:5,12:5,10:0,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1758 chr16 5718941 . C A 0 PASS DP=56;GPV=1;SPV=0.0055747;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:19,14:12,8:7,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1759 chr16 7341720 . C T 0 PASS DP=21;GPV=1;SPV=0.17143;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:0,1:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1760 chr16 8008927 . T A 0 PASS DP=51;GPV=1;SPV=0.061499;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:27,6:13,2:14,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1761 chr16 10109031 . AAAAAC A 0 PASS DP=32;GPV=1;SPV=0.16643;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:9,3:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1762 chr16 11419177 . AAAC A 0 PASS DP=55;GPV=1;SPV=0.0071642;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:19,14:11,4:8,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1763 chr16 11831582 . CT C 0 PASS DP=26;GPV=1;SPV=0.12846;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,4:5,2:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1764 chr16 12768867 . C CTT 0 PASS DP=53;GPV=1;SPV=0.02502;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,9:13,7:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1765 chr16 12964384 . G GT 0 PASS DP=45;GPV=1;SPV=0.0064629;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:14,15:8,11:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1766 chr16 12997410 . G GT 0 PASS DP=41;GPV=1;SPV=0.03942;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,8:10,7:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1767 chr16 13015906 . CT C 0 PASS DP=23;GPV=1;SPV=0.1866;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:0,0:11,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1768 chr16 13672033 . GAC G 0 PASS DP=73;GPV=1;SPV=0.00010076;SS=2;SSC=39;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:25,12:14,5:11,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1769 chr16 14984027 . G T 0 PASS DP=136;GPV=1;SPV=0.030074;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:80:64,16:37,7:27,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1770 chr16 15175445 . G A 0 PASS DP=84;GPV=1;SPV=0.016688;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:36,17:16,8:20,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1771 chr16 15205476 . C T 0 PASS DP=55;GPV=1;SPV=0.080354;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:12,1:14,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1772 chr16 15354699 . C A 0 PASS DP=47;GPV=1;SPV=0.046683;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,5:6,2:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1773 chr16 15370422 . T TCA 0 PASS DP=58;GPV=1;SPV=0.0079779;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:24,13:12,8:12,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1774 chr16 15900355 . A ATTTT 0 PASS DP=28;GPV=1;SPV=0.038406;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,6:3,2:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1775 chr16 15990816 . A ATTT 0 PASS DP=41;GPV=1;SPV=0.016624;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:5,8:3,3:2,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1776 chr16 16368457 . A G 0 PASS DP=108;GPV=1;SPV=0.011997;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:47,6:26,1:21,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1777 chr16 17039743 . G T 0 PASS DP=81;GPV=1;SPV=0.00017085;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:35,17:12,9:23,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1778 chr16 17750759 . C A 0 PASS DP=37;GPV=1;SPV=0.024499;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:6,8:2,1:4,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1779 chr16 17932390 . G T 0 PASS DP=82;GPV=1;SPV=0.0012439;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:36,11:18,7:18,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1780 chr16 18089694 . A T 0 PASS DP=23;GPV=1;SPV=0.016624;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:5,9:4,3:1,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1781 chr16 18100039 . G A 0 PASS DP=62;GPV=1;SPV=0.0032976;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:28,11:16,3:12,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1782 chr16 18248812 . C T 0 PASS DP=62;GPV=1;SPV=0.026257;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:26,5:15,2:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1783 chr16 19181999 . C CA 0 PASS DP=42;GPV=1;SPV=0.0074524;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:12,12:11,10:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1784 chr16 20242017 . G A 0 PASS DP=50;GPV=1;SPV=0.29371;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:6,3:4,1:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1785 chr16 21587186 . A ATATAT 0 PASS DP=40;GPV=1;SPV=0.01217;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:12,10:5,5:7,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1786 chr16 21874887 . G A 0 PASS DP=106;GPV=1;SPV=0.016836;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:44,10:21,5:23,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1787 chr16 22356949 . AAAAG A 0 PASS DP=29;GPV=1;SPV=0.087179;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,5:8,3:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1788 chr16 22447928 . G A 0 PASS DP=27;GPV=1;SPV=0.057037;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:10,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1789 chr16 22541751 . T C 0 PASS DP=63;GPV=1;SPV=0.02202;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:29,11:11,6:18,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1790 chr16 23040714 . C CAAAAAAAA 0 PASS DP=38;GPV=1;SPV=0.058442;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,4:6,3:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1791 chr16 23109841 . CA C 0 PASS DP=36;GPV=1;SPV=0.0013324;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:8,12:5,6:3,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1792 chr16 23260121 . GGGAAGGAAGGAAGGAAGGAAGGAA G 0 PASS DP=20;GPV=1;SPV=0.06993;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:4,4:4,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1793 chr16 23277615 . CAAAAAA C 0 PASS DP=27;GPV=1;SPV=0.0027387;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:2,8:0,7:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1794 chr16 23437888 . C G 0 PASS DP=72;GPV=1;SPV=0.0046274;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:34,10:13,2:21,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1795 chr16 23553896 . C CA 0 PASS DP=47;GPV=1;SPV=0.043687;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:19,14:12,9:7,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1796 chr16 23726071 . CTG C 0 PASS DP=27;GPV=1;SPV=0.0086957;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,6:4,5:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1797 chr16 24049257 . C A 0 PASS DP=42;GPV=1;SPV=0.15679;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:12,2:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1798 chr16 24615462 . A T 0 PASS DP=70;GPV=1;SPV=0.029275;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:34,6:14,5:20,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1799 chr16 25640694 . AAGTACAC A 0 PASS DP=69;GPV=1;SPV=0.0075593;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:26,6:12,4:14,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1800 chr16 25828296 . CTT C 0 PASS DP=27;GPV=1;SPV=0.23077;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:5,2:4,1:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1801 chr16 26509225 . G GAA 0 PASS DP=42;GPV=1;SPV=0.023137;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:15,10:10,8:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1802 chr16 26950190 . T C 0 PASS DP=79;GPV=1;SPV=0.0014217;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:38,14:20,10:18,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1803 chr16 27187399 . C T 0 PASS DP=71;GPV=1;SPV=0.057558;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:36,5:19,3:17,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1804 chr16 27842101 . A T 0 PASS DP=39;GPV=1;SPV=0.088935;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:11,1:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1805 chr16 28140694 . T A 0 PASS DP=51;GPV=1;SPV=0.043423;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:12,5:6,2:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1806 chr16 28918068 . T G 0 PASS DP=41;GPV=1;SPV=0.016351;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,8:9,5:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1807 chr16 28918076 . T G 0 PASS DP=42;GPV=1;SPV=0.022461;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:20,9:9,6:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1808 chr16 29285970 . G GTTT 0 PASS DP=64;GPV=1;SPV=0.0084125;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:17,11:11,8:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1809 chr16 29756688 . A C 0 PASS DP=46;GPV=1;SPV=0.46154;SS=2;SSC=3;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:7,2:4,1:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1810 chr16 30049781 . C T 0 PASS DP=66;GPV=1;SPV=0.036325;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:30,5:18,2:12,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1811 chr16 30141432 . C CT 0 PASS DP=28;GPV=1;SPV=0.028284;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,7:3,6:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1812 chr16 30244008 . G T 0 PASS DP=82;GPV=1;SPV=0.042203;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:34,4:31,4:3,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1813 chr16 30850209 . CA C 0 PASS DP=50;GPV=1;SPV=0.034541;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:22,10:10,9:12,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1814 chr16 31105371 . C G 0 PASS DP=68;GPV=1;SPV=0.012926;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:33,8:30,2:3,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1815 chr16 31670582 . A C 0 PASS DP=56;GPV=1;SPV=0.025729;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,5:12,3:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1816 chr16 31736517 . CT C 0 PASS DP=33;GPV=1;SPV=0.040398;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,10:3,7:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1817 chr16 32111730 . G A 0 PASS DP=70;GPV=1;SPV=0.022505;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:35,7:14,6:21,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1818 chr16 32116657 . T G 0 PASS DP=57;GPV=1;SPV=0.0042869;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:24,9:10,1:14,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1819 chr16 32824134 . G T 0 PASS DP=75;GPV=1;SPV=0.025256;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:32,5:15,3:17,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1820 chr16 33033898 . C A 0 PASS DP=125;GPV=1;SPV=0.015731;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:70:56,14:35,12:21,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1821 chr16 33822591 . T G 0 PASS DP=28;GPV=1;SPV=0.22398;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,4:8,3:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1822 chr16 33921319 . T C 0 PASS DP=35;GPV=1;SPV=0.011528;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,7:12,4:1,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1823 chr16 34060541 . C G 0 PASS DP=81;GPV=1;SPV=0.018682;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:36,9:24,8:12,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1824 chr16 34165392 . G A 0 PASS DP=104;GPV=1;SPV=0.041086;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:40,13:22,6:18,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1825 chr16 34288419 . T G 0 PASS DP=37;GPV=1;SPV=0.073359;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:12,1:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1826 chr16 36093993 . G A 0 PASS DP=133;GPV=1;SPV=0.043365;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:70:63,7:24,1:39,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1827 chr16 36106679 . T C 0 PASS DP=130;GPV=1;SPV=0.009971;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:71:53,18:35,10:18,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1828 chr16 36678218 . G A 0 PASS DP=33;GPV=1;SPV=0.29588;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:18,3:10,1:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1829 chr16 36750942 . C G 0 PASS DP=24;GPV=1;SPV=0.059497;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:10,2:0,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1830 chr16 37335382 . C T 0 PASS DP=77;GPV=1;SPV=0.0013413;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:32,10:3,1:29,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1831 chr16 38267947 . T C 0 PASS DP=150;GPV=1;SPV=0.038711;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:97:78,19:51,2:27,17
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1832 chr16 46386931 . T C 0 PASS DP=11044;GPV=1;SPV=0.0087432;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:6613:5937,671:3513,300:2424,371
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1833 chr16 46386999 . A G 0 PASS DP=13419;GPV=1;SPV=3.1864e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:6785:6054,731:3430,367:2624,364
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1834 chr16 46389736 . C T 0 PASS DP=14190;GPV=1;SPV=0.013955;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:7169:6353,776:3885,330:2468,446
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1835 chr16 46391132 . T C 0 PASS DP=15216;GPV=1;SPV=0.030556;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:7698:6838,788:1845,207:4993,581
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1836 chr16 46460236 . T C 0 PASS DP=164;GPV=1;SPV=0.019249;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:100:77,23:52,9:25,14
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1837 chr16 46486268 . G A 0 PASS DP=59;GPV=1;SPV=0.0010012;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:19,8:12,4:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1838 chr16 46975040 . T G 0 PASS DP=45;GPV=1;SPV=0.049096;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:9,2:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1839 chr16 47860058 . TAC T 0 PASS DP=57;GPV=1;SPV=0.099494;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:27,4:13,3:14,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1840 chr16 49729639 . CTAT C 0 PASS DP=46;GPV=1;SPV=0.020181;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,10:10,5:5,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1841 chr16 50108803 . C CA 0 PASS DP=46;GPV=1;SPV=0.0052889;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,9:17,8:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1842 chr16 50417312 . A ATGCGTGTG 0 PASS DP=46;GPV=1;SPV=0.0039567;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:11,12:7,5:4,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1843 chr16 51134127 . A G 0 PASS DP=60;GPV=1;SPV=0.032422;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:29,6:22,2:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1844 chr16 52014585 . CA C 0 PASS DP=40;GPV=1;SPV=0.035509;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:16,13:7,7:9,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1845 chr16 52803772 . AAG A 0 PASS DP=43;GPV=1;SPV=0.071753;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:14,1:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1846 chr16 54745473 . T G 0 PASS DP=69;GPV=1;SPV=0.10871;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:40,5:22,3:18,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1847 chr16 55086179 . C G 0 PASS DP=61;GPV=1;SPV=0.00022484;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:22,13:11,10:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1848 chr16 55770105 . T G 0 PASS DP=46;GPV=1;SPV=0.058443;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,5:9,3:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1849 chr16 56021703 . A G 0 PASS DP=34;GPV=1;SPV=0.068627;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:6,4:1,1:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1850 chr16 56256720 . G C 0 PASS DP=40;GPV=1;SPV=0.065325;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,5:6,3:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1851 chr16 56740171 . C T 0 PASS DP=76;GPV=1;SPV=0.039456;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:30,6:14,5:16,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1852 chr16 56815902 . C G 0 PASS DP=48;GPV=1;SPV=0.038416;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:14,2:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1853 chr16 57030382 . A AGATGGATGGATG 0 PASS DP=42;GPV=1;SPV=0.086046;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:18,8:5,6:13,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1854 chr16 57311487 . T A 0 PASS DP=45;GPV=1;SPV=0.030075;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:7,5:2,2:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1855 chr16 57628903 . T A 0 PASS DP=37;GPV=1;SPV=0.15091;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:9,1:12,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1856 chr16 58421385 . C A 0 PASS DP=59;GPV=1;SPV=0.0074921;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:27,9:16,3:11,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1857 chr16 59258541 . T G 0 PASS DP=39;GPV=1;SPV=0.045809;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,10:5,6:11,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1858 chr16 60007186 . A T 0 PASS DP=20;GPV=1;SPV=0.10217;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:2,2:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1859 chr16 60007188 . A T 0 PASS DP=21;GPV=1;SPV=0.063246;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:2,3:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1860 chr16 60490959 . G A 0 PASS DP=67;GPV=1;SPV=0.023295;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:31,6:17,2:14,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1861 chr16 60774449 . C CA 0 PASS DP=44;GPV=1;SPV=0.090497;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,5:14,3:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1862 chr16 60895417 . CATTTATTT C 0 PASS DP=56;GPV=1;SPV=0.00595;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:21,11:12,6:9,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1863 chr16 60895426 . A G 0 PASS DP=58;GPV=1;SPV=0.0081718;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:20,12:10,7:10,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1864 chr16 60910286 . CAA C 0 PASS DP=32;GPV=1;SPV=0.018485;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:10,10:6,9:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1865 chr16 61960119 . ATGTG A 0 PASS DP=92;GPV=1;SPV=0.046863;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:29,10:15,5:14,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1866 chr16 62779476 . A T 0 PASS DP=38;GPV=1;SPV=0.11996;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:13,3:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1867 chr16 64575222 . GC G 0 PASS DP=78;GPV=1;SPV=0.00098594;SS=2;SSC=30;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:33,11:16,5:17,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1868 chr16 64625946 . C G 0 PASS DP=71;GPV=1;SPV=0.044221;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:34,5:16,3:18,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1869 chr16 66199028 . T C 0 PASS DP=43;GPV=1;SPV=0.086103;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:8,3:12,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1870 chr16 66384078 . C CT 0 PASS DP=20;GPV=1;SPV=0.051084;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,5:0,1:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1871 chr16 67130346 . C CT 0 PASS DP=29;GPV=1;SPV=0.023188;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,6:4,2:3,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1872 chr16 67370630 . CAAA C 0 PASS DP=35;GPV=1;SPV=0.0031702;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:9,14:7,11:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1873 chr16 67794864 . A T 0 PASS DP=37;GPV=1;SPV=0.00055217;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:8,13:3,5:5,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1874 chr16 67803650 . CA C 0 PASS DP=36;GPV=1;SPV=0.011437;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,6:9,5:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1875 chr16 68601090 . CA C 0 PASS DP=41;GPV=1;SPV=0.0021563;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:9,11:6,8:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1876 chr16 68787825 . A ATTTTTTTTT 0 PASS DP=44;GPV=1;SPV=0.23178;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:11,2:16,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1877 chr16 69103003 . ATGTG A 0 PASS DP=27;GPV=1;SPV=0.024887;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:4,8:3,5:1,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1878 chr16 69207215 . C T 0 PASS DP=58;GPV=1;SPV=0.003036;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:26,12:11,9:15,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1879 chr16 69952303 . A G 0 PASS DP=60;GPV=1;SPV=0.016694;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:23,12:8,8:15,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1880 chr16 70179149 . T C 0 PASS DP=33;GPV=1;SPV=0.085739;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,5:6,3:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1881 chr16 71133955 . C T 0 PASS DP=75;GPV=1;SPV=0.033359;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:34,5:18,3:16,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1882 chr16 71584459 . C T 0 PASS DP=43;GPV=1;SPV=0.08112;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:17,5:7,2:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1883 chr16 71898370 . G GA 0 PASS DP=35;GPV=1;SPV=0.02882;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,6:10,5:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1884 chr16 72882977 . GGT G 0 PASS DP=45;GPV=1;SPV=0.044074;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,8:13,6:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1885 chr16 73105370 . CAT C 0 PASS DP=38;GPV=1;SPV=0.11996;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:12,2:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1886 chr16 73603772 . C CTTT 0 PASS DP=28;GPV=1;SPV=0.0096618;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:6,5:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1887 chr16 73682940 . A G 0 PASS DP=35;GPV=1;SPV=0.040348;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,6:12,4:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1888 chr16 74110141 . C A 0 PASS DP=60;GPV=1;SPV=0.016839;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:23,8:12,5:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1889 chr16 74409270 . A C 0 PASS DP=69;GPV=1;SPV=0.028787;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:29,11:13,4:16,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1890 chr16 74411066 . T G 0 PASS DP=150;GPV=1;SPV=0.0035276;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:93:78,15:39,11:39,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1891 chr16 74837934 . G A 0 PASS DP=44;GPV=1;SPV=0.13122;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,5:12,3:13,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1892 chr16 78010669 . A AAT 0 PASS DP=61;GPV=1;SPV=0.010905;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:16,7:6,3:10,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1893 chr16 78159672 . GT G 0 PASS DP=36;GPV=1;SPV=0.0035224;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:12,10:7,8:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1894 chr16 78422758 . C T 0 PASS DP=35;GPV=1;SPV=0.15415;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:11,4:7,1:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1895 chr16 79289854 . A ATTTTT 0 PASS DP=33;GPV=1;SPV=0.023574;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,8:4,5:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1896 chr16 80093544 . A T 0 PASS DP=61;GPV=1;SPV=0.0035775;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:22,7:10,1:12,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1897 chr16 81419489 . TTAAAAA T 0 PASS DP=49;GPV=1;SPV=0.0021827;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:20,13:11,6:9,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1898 chr16 82345628 . AT A 0 PASS DP=58;GPV=1;SPV=0.025729;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:23,5:14,2:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1899 chr16 82627341 . T C 0 PASS DP=63;GPV=1;SPV=0.047937;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:18,10:3,6:15,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1900 chr16 84051475 . G GC 0 PASS DP=37;GPV=1;SPV=0.16089;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:10,3:10,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1901 chr16 85288290 . T G 0 PASS DP=72;GPV=1;SPV=7.7636e-06;SS=2;SSC=51;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:21,14:10,9:11,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1902 chr16 86128278 . A ATTTT 0 PASS DP=32;GPV=1;SPV=0.037681;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:8,7:2,4:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1903 chr16 86464582 . A G 0 PASS DP=22;GPV=1;SPV=0.024724;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:5,8:2,3:3,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1904 chr16 86694506 . G A 0 PASS DP=73;GPV=1;SPV=1.0638e-05;SS=2;SSC=49;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:23,15:8,9:15,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1905 chr16 88292798 . C CAA 0 PASS DP=45;GPV=1;SPV=0.032647;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:8,8:5,7:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1906 chr16 88565653 . T C 0 PASS DP=55;GPV=1;SPV=0.00010896;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,11:11,8:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1907 chr16 88729697 . A G 0 PASS DP=48;GPV=1;SPV=0.035714;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:24,7:14,4:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1908 chr16 88729827 . C A 0 PASS DP=59;GPV=1;SPV=0.069135;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:20,2:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1909 chr16 88794460 . CTT C 0 PASS DP=33;GPV=1;SPV=0.12152;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,6:10,5:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1910 chr16 89677606 . G GAA 0 PASS DP=27;GPV=1;SPV=0.033054;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,8:4,7:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1911 chr16 89885002 . G GC 0 PASS DP=25;GPV=1;SPV=0.040458;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:6,3:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1912 chr16 89976561 . G GTTT 0 PASS DP=35;GPV=1;SPV=0.082922;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,6:13,5:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1913 chr16 90120777 . T C 0 PASS DP=137;GPV=1;SPV=0.01402;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:67:54,13:15,5:39,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1914 chr16 90120924 . CTA C 0 PASS DP=40;GPV=1;SPV=0.053015;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:1,0:15,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1915 chr16 90172845 . CAAA C 0 PASS DP=49;GPV=1;SPV=0.23453;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:25,4:15,3:10,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1916 chr16 90226065 . C T 0 PASS DP=66;GPV=1;SPV=0.037715;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:31,9:13,2:18,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1917 chr17 595251 . T C 0 PASS DP=30;GPV=1;SPV=0.0401;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,8:8,4:2,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1918 chr17 987235 . A G 0 PASS DP=31;GPV=1;SPV=0.035088;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:6,4:1,3:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1919 chr17 1415477 . CTTTT C 0 PASS DP=26;GPV=1;SPV=0.0055997;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,9:4,5:3,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1920 chr17 1704223 . C CA 0 PASS DP=31;GPV=1;SPV=0.076628;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,4:8,3:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1921 chr17 2217587 . AGCAAAG A 0 PASS DP=47;GPV=1;SPV=0.0073497;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:20,9:12,4:8,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1922 chr17 2217595 . A AT 0 PASS DP=39;GPV=1;SPV=0.01758;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:11,4:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1923 chr17 2454563 . A AT 0 PASS DP=37;GPV=1;SPV=0.0093841;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,10:10,6:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1924 chr17 2531534 . T G 0 PASS DP=66;GPV=1;SPV=0.00079441;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:27,12:12,5:15,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1925 chr17 2541168 . A G 0 PASS DP=29;GPV=1;SPV=0.037648;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:6,3:3,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1926 chr17 2825751 . C T 0 PASS DP=54;GPV=1;SPV=0.047273;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:14,2:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1927 chr17 3058740 . G A 0 PASS DP=38;GPV=1;SPV=0.084679;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:12,2:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1928 chr17 3254642 . C CA 0 PASS DP=42;GPV=1;SPV=0.027664;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,10:9,6:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1929 chr17 4652833 . G GGA 0 PASS DP=36;GPV=1;SPV=0.10217;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:8,8:5,7:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1930 chr17 4852020 . A C 0 PASS DP=41;GPV=1;SPV=0.14763;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:11,2:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1931 chr17 4857195 . C T 0 PASS DP=76;GPV=1;SPV=3.6836e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:25,19:11,11:14,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1932 chr17 5369906 . G T 0 PASS DP=71;GPV=1;SPV=0.001305;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:25,8:9,6:16,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1933 chr17 5717301 . C CT 0 PASS DP=41;GPV=1;SPV=0.16358;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,4:6,2:16,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1934 chr17 5856042 . C T 0 PASS DP=47;GPV=1;SPV=0.0075805;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:5,3:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1935 chr17 6482060 . C G 0 PASS DP=21;GPV=1;SPV=0.04257;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,6:1,4:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1936 chr17 6929272 . G C 0 PASS DP=62;GPV=1;SPV=2.0078e-06;SS=2;SSC=56;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:17,19:3,7:14,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1937 chr17 6976470 . GCGAAAC G 0 PASS DP=66;GPV=1;SPV=0.0033765;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:24,7:13,3:11,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1938 chr17 7190077 . GA G 0 PASS DP=21;GPV=1;SPV=0.037461;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,7:2,4:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1939 chr17 9289793 . C A 0 PASS DP=72;GPV=1;SPV=0.053561;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:36,5:18,2:18,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1940 chr17 9729234 . A G 0 PASS DP=67;GPV=1;SPV=0.010005;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:34,10:18,6:16,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1941 chr17 10461933 . C T 0 PASS DP=60;GPV=1;SPV=0.011827;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:28,8:14,6:14,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1942 chr17 10744042 . T C 0 PASS DP=48;GPV=1;SPV=0.077418;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:24,5:6,3:18,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1943 chr17 13368851 . G GAT 0 PASS DP=25;GPV=1;SPV=0.044272;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:7,6:3,4:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1944 chr17 13584551 . G A 0 PASS DP=34;GPV=1;SPV=0.059571;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:13,4:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1945 chr17 13782415 . C CAAA 0 PASS DP=28;GPV=1;SPV=0.010217;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:5,7:3,6:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1946 chr17 14151526 . AACACACACAC A 0 PASS DP=42;GPV=1;SPV=0.0074142;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:5,13:3,7:2,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1947 chr17 14440191 . G GGAAA 0 PASS DP=31;GPV=1;SPV=0.045822;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,9:10,7:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1948 chr17 14753594 . T G 0 PASS DP=72;GPV=1;SPV=0.09797;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:41,5:24,2:17,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1949 chr17 15242251 . CA C 0 PASS DP=32;GPV=1;SPV=0.01458;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:12,10:7,9:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1950 chr17 15665402 . A G 0 PASS DP=66;GPV=1;SPV=0.018751;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:28,9:13,8:15,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1951 chr17 15673794 . A G 0 PASS DP=75;GPV=1;SPV=0.037304;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:40,13:27,2:13,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1952 chr17 16340427 . A ATTTTT 0 PASS DP=20;GPV=1;SPV=0.15385;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,4:2,3:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1953 chr17 16796879 . C CT 0 PASS DP=57;GPV=1;SPV=0.0037453;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:16,11:9,8:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1954 chr17 17878452 . G T 0 PASS DP=70;GPV=1;SPV=0.0014418;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:31,12:14,8:17,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1955 chr17 18368399 . C A 0 PASS DP=79;GPV=1;SPV=2.2099e-06;SS=2;SSC=56;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:25,18:13,8:12,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1956 chr17 18398680 . C T 0 PASS DP=77;GPV=1;SPV=0.042853;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:33,13:14,6:19,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1957 chr17 18661275 . CAA C 0 PASS DP=31;GPV=1;SPV=0.0069323;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:4,8:3,5:1,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1958 chr17 18679197 . C A 0 PASS DP=65;GPV=1;SPV=0.00025694;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:26,16:15,9:11,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1959 chr17 18679198 . C T 0 PASS DP=69;GPV=1;SPV=5.9747e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:26,18:16,10:10,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1960 chr17 21346975 . T C 0 PASS DP=75;GPV=1;SPV=0.069447;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:43,6:27,2:16,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1961 chr17 21424791 . T TA 0 PASS DP=89;GPV=1;SPV=0.03763;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:34,10:14,7:20,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1962 chr17 21432479 . AC A 0 PASS DP=111;GPV=1;SPV=0.021284;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:42,12:22,3:20,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1963 chr17 21626815 . CT C 0 PASS DP=23;GPV=1;SPV=0.15415;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:10,3:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1964 chr17 21849662 . A G 0 PASS DP=251;GPV=1;SPV=0.029297;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:139:119,20:51,15:68,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1965 chr17 21991867 . A AGGAATGGAAT 0 PASS DP=30;GPV=1;SPV=0.0078215;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,8:3,4:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1966 chr17 22149474 . CT C 0 PASS DP=164;GPV=1;SPV=0.011233;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:100:80,20:44,10:36,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1967 chr17 22153548 . T TA 0 PASS DP=127;GPV=1;SPV=0.073628;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:71:35,5:20,3:15,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1968 chr17 22745558 . T C 0 PASS DP=45;GPV=1;SPV=0.049096;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:10,2:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1969 chr17 22882295 . G T 0 PASS DP=295;GPV=1;SPV=0.017626;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:159:142,17:96,15:46,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1970 chr17 22882296 . A T 0 PASS DP=306;GPV=1;SPV=0.033148;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:161:143,18:95,14:48,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1971 chr17 22884020 . C T 0 PASS DP=89;GPV=1;SPV=0.055873;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:50,6:15,2:35,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1972 chr17 22915550 . C A 0 PASS DP=28;GPV=1;SPV=0.034921;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:0,0:9,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1973 chr17 22985684 . A T 0 PASS DP=30;GPV=1;SPV=0.1088;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:9,3:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1974 chr17 22997213 . C A 0 PASS DP=26;GPV=1;SPV=0.047826;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:8,3:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1975 chr17 23172989 . G C 0 PASS DP=94;GPV=1;SPV=0.0025892;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:39,15:27,13:12,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1976 chr17 26577119 . C G 0 PASS DP=36;GPV=1;SPV=0.041126;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:6,1:9,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1977 chr17 26579154 . G A 0 PASS DP=17;GPV=1;SPV=0.082353;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:5,3:2,2:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1978 chr17 26730150 . T C 0 PASS DP=85;GPV=1;SPV=0.041789;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:41,5:26,1:15,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1979 chr17 26743321 . C T 0 PASS DP=246;GPV=1;SPV=0.017577;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:135:114,21:69,15:45,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1980 chr17 27077935 . T A 0 PASS DP=55;GPV=1;SPV=0.0015164;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:21,10:12,3:9,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1981 chr17 27637752 . C T 0 PASS DP=89;GPV=1;SPV=0.031612;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:41,8:26,7:15,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1982 chr17 29236531 . CT C 0 PASS DP=38;GPV=1;SPV=0.027027;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,6:5,3:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1983 chr17 30189852 . GTATTTTT G 0 PASS DP=35;GPV=1;SPV=0.062192;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,6:9,2:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1984 chr17 30439368 . C CTTTTT 0 PASS DP=23;GPV=1;SPV=0.037461;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:5,7:4,5:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1985 chr17 30943848 . AAAAT A 0 PASS DP=40;GPV=1;SPV=0.021798;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,7:8,4:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1986 chr17 31483196 . A C 0 PASS DP=34;GPV=1;SPV=0.12;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,2:4,1:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1987 chr17 32025030 . G GTTT 0 PASS DP=25;GPV=1;SPV=0.12913;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,5:5,4:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1988 chr17 32614072 . A AT 0 PASS DP=40;GPV=1;SPV=0.0032037;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:5,12:1,10:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1989 chr17 32948034 . C T 0 PASS DP=33;GPV=1;SPV=0.29549;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,4:2,3:18,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1990 chr17 33094106 . G C 0 PASS DP=77;GPV=1;SPV=0.014944;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:39,8:18,4:21,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1991 chr17 35963052 . C CA 0 PASS DP=39;GPV=1;SPV=0.016242;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:12,13:11,8:1,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1992 chr17 35974455 . C CACCTATATATATATAT 0 PASS DP=40;GPV=1;SPV=0.1538;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:11,2:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1993 chr17 36271647 . AT A 0 PASS DP=53;GPV=1;SPV=0.13974;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:12,2:17,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1994 chr17 36402265 . C CT 0 PASS DP=25;GPV=1;SPV=0.037623;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,7:1,5:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1995 chr17 37202712 . TACAC T 0 PASS DP=17;GPV=1;SPV=0.1;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:8:0,2:0,0:0,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1996 chr17 37453759 . ATTT A 0 PASS DP=27;GPV=1;SPV=0.17436;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:13,3:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1997 chr17 37895642 . T A 0 PASS DP=17;GPV=1;SPV=0.12353;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:6,3:6,3:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1998 chr17 37912651 . CAAA C 0 PASS DP=29;GPV=1;SPV=0.042146;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:9,3:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1999 chr17 38258518 . A T 0 PASS DP=57;GPV=1;SPV=0.10359;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:10,3:19,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2000 chr17 39280235 . C CA 0 PASS DP=35;GPV=1;SPV=0.013867;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,8:7,7:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2001 chr17 40501685 . G T 0 PASS DP=76;GPV=1;SPV=0.0032628;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:31,8:15,2:16,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2002 chr17 40640666 . A T 0 PASS DP=66;GPV=1;SPV=7.8889e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:23,14:10,6:13,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2003 chr17 41084542 . C A 0 PASS DP=38;GPV=1;SPV=0.081081;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:8,2:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2004 chr17 41109461 . C T 0 PASS DP=82;GPV=1;SPV=0.035223;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:34,12:16,7:18,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2005 chr17 41220267 . G GA 0 PASS DP=39;GPV=1;SPV=0.11947;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:9,4:9,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2006 chr17 41310356 . A AG 0 PASS DP=52;GPV=1;SPV=0.0099465;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:25,11:16,5:9,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2007 chr17 41719890 . C CTT 0 PASS DP=32;GPV=1;SPV=0.015905;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:4,8:1,5:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2008 chr17 42965126 . A T 0 PASS DP=40;GPV=1;SPV=0.27778;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:3,2:1,1:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2009 chr17 43361367 . T C 0 PASS DP=41;GPV=1;SPV=0.070897;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:10,2:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2010 chr17 43842922 . C T 0 PASS DP=71;GPV=1;SPV=1.1338e-06;SS=2;SSC=59;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:18,15:11,9:7,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2011 chr17 43851133 . C CA 0 PASS DP=36;GPV=1;SPV=0.045694;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:13,6:8,5:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2012 chr17 44652655 . A AAAAAAG 0 PASS DP=48;GPV=1;SPV=0.0038981;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,7:7,5:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2013 chr17 44729683 . T TAC 0 PASS DP=29;GPV=1;SPV=0.12913;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:9,6:4,4:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2014 chr17 45035480 . T TA 0 PASS DP=33;GPV=1;SPV=0.035523;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:6,8:2,4:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2015 chr17 45276823 . C CTT 0 PASS DP=36;GPV=1;SPV=0.10105;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,5:10,3:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2016 chr17 45619471 . TC T 0 PASS DP=50;GPV=1;SPV=0.029113;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,10:4,5:14,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2017 chr17 45882230 . CT C 0 PASS DP=34;GPV=1;SPV=0.016617;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:11,11:6,9:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2018 chr17 46046840 . T TA 0 PASS DP=33;GPV=1;SPV=0.037461;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:5,8:2,6:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2019 chr17 46775609 . C CT 0 PASS DP=29;GPV=1;SPV=0.20399;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:10,3:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2020 chr17 46845785 . CTT C 0 PASS DP=22;GPV=1;SPV=0.13866;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,4:4,3:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2021 chr17 47530351 . GT G 0 PASS DP=41;GPV=1;SPV=0.042236;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:9,8:6,5:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2022 chr17 48089102 . C CT 0 PASS DP=35;GPV=1;SPV=0.0095694;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:5,12:4,10:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2023 chr17 48103734 . C CTT 0 PASS DP=42;GPV=1;SPV=0.0064629;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:14,12:7,9:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2024 chr17 48143189 . C CT 0 PASS DP=20;GPV=1;SPV=0.0098833;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:3,7:1,6:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2025 chr17 48213350 . C CAA 0 PASS DP=41;GPV=1;SPV=0.0024977;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:11,8:7,7:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2026 chr17 48385938 . G A 0 PASS DP=53;GPV=1;SPV=0.00027241;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,10:9,5:7,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2027 chr17 48728883 . C T 0 PASS DP=48;GPV=1;SPV=0.17679;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:16,4:8,1:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2028 chr17 49024083 . A AT 0 PASS DP=28;GPV=1;SPV=0.032107;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,5:6,2:0,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2029 chr17 49265122 . T TTTCCTTCCTTCCTTCCTTCCTTCC 0 PASS DP=41;GPV=1;SPV=0.26316;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,3:7,1:16,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2030 chr17 49347736 . T G 0 PASS DP=35;GPV=1;SPV=0.22222;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:3,2:3,1:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2031 chr17 50442326 . T A 0 PASS DP=40;GPV=1;SPV=0.3956;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:7,2:4,1:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2032 chr17 50623263 . A AT 0 PASS DP=31;GPV=1;SPV=0.027077;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:10,11:5,7:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2033 chr17 52559818 . A ATGTG 0 PASS DP=34;GPV=1;SPV=0.0070965;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:7,14:3,5:4,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2034 chr17 52564848 . T TAC 0 PASS DP=39;GPV=1;SPV=0.015866;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:7,10:6,3:1,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2035 chr17 53700738 . C T 0 PASS DP=39;GPV=1;SPV=0.16084;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:22,5:5,3:17,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2036 chr17 54632086 . C T 0 PASS DP=30;GPV=1;SPV=0.04735;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:5,2:5,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2037 chr17 56192869 . A T 0 PASS DP=39;GPV=1;SPV=0.003085;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,10:11,3:3,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2038 chr17 56671696 . CTTTTTTTTT C 0 PASS DP=20;GPV=1;SPV=0.070707;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:3,4:1,2:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2039 chr17 59409693 . C G 0 PASS DP=93;GPV=1;SPV=7.7505e-06;SS=2;SSC=51;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:30,14:16,4:14,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2040 chr17 59860012 . A AT 0 PASS DP=51;GPV=1;SPV=0.049793;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,8:7,4:11,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2041 chr17 60142207 . CAAAA C 0 PASS DP=35;GPV=1;SPV=0.033948;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:7,8:5,6:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2042 chr17 61561201 . T A 0 PASS DP=68;GPV=1;SPV=0.04108;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:35,6:21,4:14,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2043 chr17 62691771 . C CA 0 PASS DP=50;GPV=1;SPV=0.016464;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:20,6:15,4:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2044 chr17 62734552 . C T 0 PASS DP=57;GPV=1;SPV=0.012731;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:25,7:13,4:12,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2045 chr17 62962865 . G A 0 PASS DP=39;GPV=1;SPV=0.032508;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:5,10:4,5:1,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2046 chr17 63300958 . A T 0 PASS DP=77;GPV=1;SPV=1.2361e-06;SS=2;SSC=59;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:23,18:11,7:12,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2047 chr17 63740107 . T TATATATATATATATATACAC 0 PASS DP=39;GPV=1;SPV=0.043382;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,4:4,3:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2048 chr17 64929079 . G A 0 PASS DP=78;GPV=1;SPV=0.026877;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:39,11:25,4:14,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2049 chr17 65015662 . T TAA 0 PASS DP=32;GPV=1;SPV=0.016624;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:5,9:2,1:3,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2050 chr17 65031890 . G GAGAA 0 PASS DP=35;GPV=1;SPV=0.01497;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:10,9:4,6:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2051 chr17 66470190 . CTT C 0 PASS DP=31;GPV=1;SPV=0.067079;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:9,6:4,5:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2052 chr17 66587869 . ATG A 0 PASS DP=36;GPV=1;SPV=0.14626;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,4:10,3:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2053 chr17 67782954 . A AATATATATATATAT 0 PASS DP=52;GPV=1;SPV=0.04668;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:20,9:5,6:15,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2054 chr17 67944240 . C T 0 PASS DP=78;GPV=1;SPV=0.000638;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:34,13:21,4:13,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2055 chr17 68000292 . A G 0 PASS DP=48;GPV=1;SPV=0.23333;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:6,2:3,1:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2056 chr17 70482847 . A AG 0 PASS DP=48;GPV=1;SPV=0.0041541;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:15,8:9,5:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2057 chr17 71424528 . G A 0 PASS DP=69;GPV=1;SPV=0.00031133;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:27,13:13,6:14,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2058 chr17 71447533 . T TTATATATATA 0 PASS DP=23;GPV=1;SPV=0.0093911;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,8:4,3:2,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2059 chr17 71490902 . T A 0 PASS DP=72;GPV=1;SPV=1.5051e-06;SS=2;SSC=58;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:21,18:10,9:11,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2060 chr17 71654194 . T TAA 0 PASS DP=33;GPV=1;SPV=0.25968;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:11,3:9,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2061 chr17 71940992 . A ATTTG 0 PASS DP=44;GPV=1;SPV=0.044074;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,8:9,5:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2062 chr17 71950356 . T TTC 0 PASS DP=62;GPV=1;SPV=0.056405;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:14,1:13,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2063 chr17 72368737 . CTT C 0 PASS DP=28;GPV=1;SPV=0.1893;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:5,1:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2064 chr17 72368800 . G T 0 PASS DP=30;GPV=1;SPV=0.086845;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:5,3:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2065 chr17 72754051 . T C 0 PASS DP=30;GPV=1;SPV=0.040458;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:10,8:8,2:2,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2066 chr17 72882799 . T TTTTTTTTTTTTCTTTTTC 0 PASS DP=31;GPV=1;SPV=0.018691;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,6:2,3:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2067 chr17 73320702 . A C 0 PASS DP=68;GPV=1;SPV=0.0018783;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:25,8:11,3:14,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2068 chr17 74169302 . T C 0 PASS DP=39;GPV=1;SPV=0.12919;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:9,3:11,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2069 chr17 74332218 . G T 0 PASS DP=50;GPV=1;SPV=0.014832;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:8,10:5,6:3,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2070 chr17 74515870 . G GATATATATATATAT 0 PASS DP=37;GPV=1;SPV=0.09062;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:12,3:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2071 chr17 76298181 . A ATTT 0 PASS DP=29;GPV=1;SPV=0.04257;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:5,9:3,3:2,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2072 chr17 76984386 . TAAA T 0 PASS DP=55;GPV=1;SPV=0.0021686;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:18,11:8,4:10,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2073 chr17 77141369 . C T 0 PASS DP=30;GPV=1;SPV=0.023788;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,8:2,1:7,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2074 chr17 77383182 . TTCTCTCCC T 0 PASS DP=29;GPV=1;SPV=0.11424;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,6:7,3:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2075 chr17 77988752 . C G 0 PASS DP=66;GPV=1;SPV=0.11412;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:14,2:21,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2076 chr17 80024394 . GAC G 0 PASS DP=58;GPV=1;SPV=0.033228;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:28,6:14,4:14,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2077 chr17 80097900 . AAAAAGAAAAGAAAAGAAAAGAAAAGAAAAG A 0 PASS DP=43;GPV=1;SPV=0.0035566;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,9:5,2:7,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2078 chr17 80634201 . CTG C 0 PASS DP=41;GPV=1;SPV=0.0041266;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,11:6,4:10,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2079 chr17 80689350 . C T 0 PASS DP=79;GPV=1;SPV=0.00060445;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:28,9:14,7:14,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2080 chr17 81177240 . C CA 0 PASS DP=27;GPV=1;SPV=0.024499;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:6,9:1,8:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2081 chr17 82471791 . C CAAAAAAAA 0 PASS DP=35;GPV=1;SPV=0.048994;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,5:4,3:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2082 chr17 82829999 . G T 0 PASS DP=72;GPV=1;SPV=0.06993;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:3,3:1,1:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2083 chr17 83134778 . G A 0 PASS DP=58;GPV=1;SPV=0.027763;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:29,7:18,4:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2084 chr17 83214281 . C G 0 PASS DP=43;GPV=1;SPV=0.0084599;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,8:9,5:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2085 chr17 83217917 . T C 0 PASS DP=64;GPV=1;SPV=0.013798;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:27,10:4,8:23,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2086 chr18 555540 . G A 0 PASS DP=75;GPV=1;SPV=0.0025765;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:27,14:12,6:15,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2087 chr18 599947 . C CAA 0 PASS DP=50;GPV=1;SPV=0.020223;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:16,11:8,6:8,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2088 chr18 608500 . AAAAC A 0 PASS DP=56;GPV=1;SPV=0.025579;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:22,12:13,7:9,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2089 chr18 645810 . A ATAT 0 PASS DP=25;GPV=1;SPV=0.18132;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,4:2,2:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2090 chr18 2584287 . C CA 0 PASS DP=40;GPV=1;SPV=0.018733;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:12,9:8,5:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2091 chr18 2678251 . CTT C 0 PASS DP=42;GPV=1;SPV=0.059981;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,6:6,3:14,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2092 chr18 2889133 . CT C 0 PASS DP=19;GPV=1;SPV=0.049536;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:4,5:2,2:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2093 chr18 3598465 . C CT 0 PASS DP=38;GPV=1;SPV=0.0081016;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:11,12:8,10:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2094 chr18 3600680 . C A 0 PASS DP=37;GPV=1;SPV=0.036036;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:4,3:9,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2095 chr18 3602593 . CA C 0 PASS DP=32;GPV=1;SPV=0.019162;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,7:7,6:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2096 chr18 7044162 . CAA C 0 PASS DP=25;GPV=1;SPV=0.028261;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:5,5:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2097 chr18 7228952 . C CT 0 PASS DP=26;GPV=1;SPV=0.11647;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,5:10,4:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2098 chr18 7746638 . G T 0 PASS DP=55;GPV=1;SPV=0.00015597;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:19,15:7,7:12,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2099 chr18 7985437 . GTATA G 0 PASS DP=47;GPV=1;SPV=0.077418;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:24,5:12,4:12,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2100 chr18 8653545 . C CA 0 PASS DP=31;GPV=1;SPV=0.028009;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:10,8:9,7:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2101 chr18 9310495 . A ATTT 0 PASS DP=28;GPV=1;SPV=0.051084;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:7,5:4,4:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2102 chr18 9386260 . G C 0 PASS DP=70;GPV=1;SPV=0.00086348;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:31,14:14,8:17,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2103 chr18 10171803 . CAA C 0 PASS DP=32;GPV=1;SPV=0.0099161;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:7,7:3,6:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2104 chr18 10196534 . G A 0 PASS DP=26;GPV=1;SPV=0.0088578;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:14:1,7:1,3:0,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2105 chr18 10788427 . AAAGG A 0 PASS DP=40;GPV=1;SPV=0.020875;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:9,9:3,5:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2106 chr18 11492817 . G GTGTGT 0 PASS DP=44;GPV=1;SPV=0.0051869;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:6,12:1,7:5,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2107 chr18 11492818 . GATAGATAGATAGA G 0 PASS DP=44;GPV=1;SPV=0.015103;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:6,12:1,7:5,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2108 chr18 11616252 . T C 0 PASS DP=22;GPV=1;SPV=0.13684;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:4,2:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2109 chr18 12230663 . G C 0 PASS DP=42;GPV=1;SPV=0.0043077;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:13,11:5,9:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2110 chr18 12958064 . CTTTTTTTTTTTTT C 0 PASS DP=27;GPV=1;SPV=0.037681;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,5:4,2:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2111 chr18 13370715 . T TTTTTTTTTTTTTTG 0 PASS DP=28;GPV=1;SPV=0.07913;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,4:4,1:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2112 chr18 14722118 . G C 0 PASS DP=17;GPV=1;SPV=0.042986;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:3,5:3,2:0,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2113 chr18 15363671 . T C 0 PASS DP=55;GPV=1;SPV=0.15352;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:13,2:18,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2114 chr18 15477796 . T G 0 PASS DP=254;GPV=1;SPV=0.020836;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:169:146,23:6,1:140,22
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2115 chr18 15506211 . C A 0 PASS DP=49;GPV=1;SPV=0.050152;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:1,0:19,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2116 chr18 15519375 . G T 0 PASS DP=44;GPV=1;SPV=0.11013;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:2,0:20,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2117 chr18 15540844 . G C 0 PASS DP=166;GPV=1;SPV=0.029466;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:97:81,16:32,11:49,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2118 chr18 15576003 . A T 0 PASS DP=20;GPV=1;SPV=0.068111;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:4,1:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2119 chr18 15608486 . A G 0 PASS DP=100;GPV=1;SPV=0.04428;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:61:52,9:46,8:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2120 chr18 15638824 . C G 0 PASS DP=55;GPV=1;SPV=0.19365;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:33,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2121 chr18 15671242 . G A 0 PASS DP=20;GPV=1;SPV=0.10217;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:8,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2122 chr18 15683167 . G A 0 PASS DP=29;GPV=1;SPV=0.25199;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:16,4:1,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2123 chr18 15721901 . T C 0 PASS DP=85;GPV=1;SPV=0.014346;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:33,13:20,5:13,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2124 chr18 15872075 . T G 0 PASS DP=102;GPV=1;SPV=0.037731;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:67:56,11:12,3:44,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2125 chr18 16113970 . C A 0 PASS DP=33;GPV=1;SPV=0.17876;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:18,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2126 chr18 16226236 . A T 0 PASS DP=39;GPV=1;SPV=0.088935;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:1,0:17,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2127 chr18 16262949 . C A 0 PASS DP=30;GPV=1;SPV=0.21839;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:0,0:17,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2128 chr18 16438479 . G T 0 PASS DP=42;GPV=1;SPV=0.13357;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:0,0:22,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2129 chr18 16484155 . G C 0 PASS DP=53;GPV=1;SPV=0.048244;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:27,6:6,2:21,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2130 chr18 16931632 . C T 0 PASS DP=41;GPV=1;SPV=0.12491;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:0,0:21,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2131 chr18 17213738 . G C 0 PASS DP=151;GPV=1;SPV=0.00088281;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:94:80,14:56,11:24,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2132 chr18 17213876 . C G 0 PASS DP=139;GPV=1;SPV=0.012647;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:93:75,18:21,9:54,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2133 chr18 17413566 . T G 0 PASS DP=34;GPV=1;SPV=0.27277;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:19,4:2,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2134 chr18 18124860 . G T 0 PASS DP=38;GPV=1;SPV=0.093821;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,7:16,1:5,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2135 chr18 18693208 . A T 0 PASS DP=39;GPV=1;SPV=0.18176;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:22,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2136 chr18 18745300 . A C 0 PASS DP=27;GPV=1;SPV=0.057037;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:10,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2137 chr18 19324556 . C A 0 PASS DP=56;GPV=1;SPV=0.047782;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:23,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2138 chr18 19334057 . G A 0 PASS DP=24;GPV=1;SPV=0.067288;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:0,0:9,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2139 chr18 19669683 . C G 0 PASS DP=61;GPV=1;SPV=0.15761;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:26,2:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2140 chr18 19921088 . C T 0 PASS DP=215;GPV=1;SPV=0.01571;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:113:95,18:9,5:86,13
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2141 chr18 20081322 . C T 0 PASS DP=35;GPV=1;SPV=0.16366;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:4,3:16,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2142 chr18 20242118 . C T 0 PASS DP=57;GPV=1;SPV=0.056683;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:28,5:6,1:22,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2143 chr18 20744710 . G C 0 PASS DP=64;GPV=1;SPV=0.05717;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:32,5:20,4:12,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2144 chr18 20767030 . G A 0 PASS DP=120;GPV=1;SPV=0.038258;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:67:55,12:31,5:24,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2145 chr18 21003903 . A C 0 PASS DP=65;GPV=1;SPV=8.1152e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:24,17:5,11:19,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2146 chr18 21221838 . G T 0 PASS DP=65;GPV=1;SPV=0.00013614;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:22,12:10,4:12,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2147 chr18 21322186 . A C 0 PASS DP=78;GPV=1;SPV=0.014944;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:34,6:23,2:11,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2148 chr18 21389333 . G GTTTTT 0 PASS DP=32;GPV=1;SPV=0.031264;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,6:8,4:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2149 chr18 21886258 . G C 0 PASS DP=67;GPV=1;SPV=0.051974;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:33,5:17,3:16,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2150 chr18 24116819 . G GT 0 PASS DP=29;GPV=1;SPV=0.012694;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,7:5,6:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2151 chr18 24562425 . A AATATTAAAAGATGATTTTAAAATG 0 PASS DP=57;GPV=1;SPV=0.022677;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:25,6:16,4:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2152 chr18 25996366 . CA C 0 PASS DP=39;GPV=1;SPV=0.017149;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:6,10:3,9:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2153 chr18 26508705 . ATATTTC A 0 PASS DP=52;GPV=1;SPV=0.0048849;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:15,14:6,7:9,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2154 chr18 26673929 . CAAA C 0 PASS DP=27;GPV=1;SPV=0.13561;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:8,3:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2155 chr18 30307766 . T A 0 PASS DP=63;GPV=1;SPV=0.0020937;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:28,12:12,8:16,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2156 chr18 30449261 . G T 0 PASS DP=69;GPV=1;SPV=4.0251e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:21,12:10,3:11,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2157 chr18 31352508 . C T 0 PASS DP=52;GPV=1;SPV=0.11622;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:19,3:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2158 chr18 31406903 . G A 0 PASS DP=49;GPV=1;SPV=0.00029111;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:13,14:5,5:8,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2159 chr18 32174185 . C CCA 0 PASS DP=43;GPV=1;SPV=0.30914;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,4:16,2:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2160 chr18 33394943 . GTATATA G 0 PASS DP=25;GPV=1;SPV=0.011899;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,8:6,6:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2161 chr18 34199145 . GT G 0 PASS DP=29;GPV=1;SPV=0.022489;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,7:5,3:3,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2162 chr18 34378476 . C T 0 PASS DP=54;GPV=1;SPV=0.014587;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:22,6:9,2:13,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2163 chr18 34908494 . CT C 0 PASS DP=24;GPV=1;SPV=0.10277;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,5:6,4:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2164 chr18 35160497 . C CT 0 PASS DP=48;GPV=1;SPV=0.004949;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:13,11:6,7:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2165 chr18 35281533 . T C 0 PASS DP=57;GPV=1;SPV=0.0011798;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:23,12:14,4:9,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2166 chr18 35517882 . G T 0 PASS DP=73;GPV=1;SPV=0.0021552;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:33,11:16,5:17,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2167 chr18 36076876 . A G 0 PASS DP=55;GPV=1;SPV=0.22175;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:17,5:4,2:13,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2168 chr18 36792027 . C CA 0 PASS DP=40;GPV=1;SPV=0.010567;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:14,8:10,7:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2169 chr18 37082166 . A ATT 0 PASS DP=33;GPV=1;SPV=0.049571;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,8:8,7:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2170 chr18 37332729 . T A 0 PASS DP=74;GPV=1;SPV=9.9379e-08;SS=2;SSC=70;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:13,13:7,5:6,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2171 chr18 37364252 . C A 0 PASS DP=60;GPV=1;SPV=1.5288e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:17,14:7,7:10,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2172 chr18 37995127 . A T 0 PASS DP=22;GPV=1;SPV=0.074661;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,5:2,4:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2173 chr18 38339263 . C T 0 PASS DP=62;GPV=1;SPV=0.00010748;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:19,11:6,3:13,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2174 chr18 38339635 . G T 0 PASS DP=63;GPV=1;SPV=0.00031429;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:22,11:9,8:13,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2175 chr18 39129371 . C G 0 PASS DP=53;GPV=1;SPV=0.036816;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,7:5,6:12,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2176 chr18 39971006 . TTA T 0 PASS DP=48;GPV=1;SPV=0.035714;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:24,7:11,3:13,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2177 chr18 40397519 . C T 0 PASS DP=67;GPV=1;SPV=0.0010058;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:29,13:15,8:14,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2178 chr18 40601153 . A AT 0 PASS DP=52;GPV=1;SPV=0.090128;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:29,6:13,2:16,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2179 chr18 42312057 . A C 0 PASS DP=58;GPV=1;SPV=0.00029342;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,9:11,4:6,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2180 chr18 42476389 . T G 0 PASS DP=50;GPV=1;SPV=0.03514;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,5:6,2:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2181 chr18 43404148 . GTA G 0 PASS DP=16;GPV=1;SPV=0.27778;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:3,2:3,1:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2182 chr18 44457096 . T A 0 PASS DP=51;GPV=1;SPV=0.00043522;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:4,4:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2183 chr18 44457097 . G T 0 PASS DP=56;GPV=1;SPV=0.0016713;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,6:5,4:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2184 chr18 47328804 . C G 0 PASS DP=42;GPV=1;SPV=0.030957;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,5:11,2:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2185 chr18 48457995 . C CA 0 PASS DP=39;GPV=1;SPV=0.043327;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:14,10:12,9:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2186 chr18 49292355 . G GACACAC 0 PASS DP=47;GPV=1;SPV=0.031374;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,7:12,6:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2187 chr18 49298795 . A T 0 PASS DP=63;GPV=1;SPV=0.0001375;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:20,11:9,3:11,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2188 chr18 54619461 . G T 0 PASS DP=79;GPV=1;SPV=0.0081488;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:39,9:18,2:21,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2189 chr18 54739456 . C CA 0 PASS DP=40;GPV=1;SPV=0.0027397;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:9,10:5,9:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2190 chr18 56262775 . G GTATATACATA 0 PASS DP=26;GPV=1;SPV=0.019565;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:3,4:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2191 chr18 56262778 . T C 0 PASS DP=23;GPV=1;SPV=0.023537;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,5:3,4:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2192 chr18 57393915 . AAGAAAGAAAAAGAAAG A 0 PASS DP=56;GPV=1;SPV=0.040114;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,6:15,3:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2193 chr18 57949913 . A G 0 PASS DP=62;GPV=1;SPV=7.9781e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:21,14:11,6:10,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2194 chr18 58115245 . C CT 0 PASS DP=32;GPV=1;SPV=0.038324;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:5,6:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2195 chr18 58480510 . CA C 0 PASS DP=36;GPV=1;SPV=0.016242;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,10:9,6:3,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2196 chr18 58905403 . C CT 0 PASS DP=26;GPV=1;SPV=0.0016018;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:6,9:5,7:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2197 chr18 59248682 . G A 0 PASS DP=47;GPV=1;SPV=2.3802e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:25:4,12:3,5:1,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2198 chr18 59879236 . C T 0 PASS DP=50;GPV=1;SPV=0.11202;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:28,5:15,1:13,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2199 chr18 62444492 . C CAAAAAAAAAA 0 PASS DP=68;GPV=1;SPV=0.007843;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:23,11:16,9:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2200 chr18 62521989 . TAA T 0 PASS DP=26;GPV=1;SPV=0.024256;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,8:3,6:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2201 chr18 65500304 . AT A 0 PASS DP=55;GPV=1;SPV=0.042547;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:13,5:6,3:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2202 chr18 65696775 . CAAACCAA C 0 PASS DP=72;GPV=1;SPV=8.5397e-05;SS=2;SSC=40;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:27,15:11,7:16,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2203 chr18 66453549 . T C 0 PASS DP=65;GPV=1;SPV=0.00015854;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:24,14:17,7:7,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2204 chr18 66468026 . AT A 0 PASS DP=28;GPV=1;SPV=0.11624;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:7,2:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2205 chr18 66524569 . T TATATATATATAA 0 PASS DP=34;GPV=1;SPV=0.029941;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,6:5,3:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2206 chr18 67776316 . ACACACATCTATC A 0 PASS DP=46;GPV=1;SPV=0.065116;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:11,3:9,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2207 chr18 68114184 . T TA 0 PASS DP=31;GPV=1;SPV=0.025986;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:10,10:5,9:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2208 chr18 68885588 . G A 0 PASS DP=51;GPV=1;SPV=0.00066023;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,10:10,6:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2209 chr18 69416181 . C G 0 PASS DP=29;GPV=1;SPV=0.33939;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:5,3:5,3:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2210 chr18 70416410 . CAAA C 0 PASS DP=36;GPV=1;SPV=0.013387;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:8,7:5,6:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2211 chr18 71265887 . C CACACACACACACACAT 0 PASS DP=65;GPV=1;SPV=0.043302;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:27,13:12,6:15,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2212 chr18 74029253 . G A 0 PASS DP=17;GPV=1;SPV=0.0067873;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:3,6:2,4:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2213 chr18 74263146 . C CA 0 PASS DP=45;GPV=1;SPV=0.028534;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:13,8:10,6:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2214 chr18 75988054 . A AAAT 0 PASS DP=65;GPV=1;SPV=0.0395;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:33,6:20,4:13,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2215 chr18 76545276 . G T 0 PASS DP=24;GPV=1;SPV=0.0013797;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:14:3,11:3,7:0,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2216 chr18 77084428 . A G 0 PASS DP=28;GPV=1;SPV=0.053922;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,5:6,4:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2217 chr18 77258636 . ATGG A 0 PASS DP=26;GPV=1;SPV=0.13025;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,5:8,2:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2218 chr18 77690521 . T C 0 PASS DP=24;GPV=1;SPV=0.046584;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:6,2:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2219 chr18 78513235 . A C 0 PASS DP=129;GPV=1;SPV=0.030951;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:75:66,9:38,6:28,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2220 chr18 78818327 . TG T 0 PASS DP=45;GPV=1;SPV=0.13742;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:10,2:14,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2221 chr18 78840400 . G A 0 PASS DP=32;GPV=1;SPV=0.018244;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,6:4,2:2,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2222 chr18 79435356 . T G 0 PASS DP=55;GPV=1;SPV=0.1253;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:32,5:18,1:14,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2223 chr18 79732517 . T C 0 PASS DP=32;GPV=1;SPV=0.085095;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:9,2:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2224 chr18 79742081 . AGAGGCCTGGGGGCAGCAGAGGAGGCATGAGGTG A 0 PASS DP=35;GPV=1;SPV=0.1143;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:10,3:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2225 chr18 80033994 . G A 0 PASS DP=27;GPV=1;SPV=0.10217;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,4:1,3:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2226 chr19 160613 . C A 0 PASS DP=66;GPV=1;SPV=0.052773;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:32,5:7,1:25,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2227 chr19 274374 . CA C 0 PASS DP=29;GPV=1;SPV=0.0046784;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:6,11:3,7:3,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2228 chr19 895257 . T TA 0 PASS DP=37;GPV=1;SPV=0.03274;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,10:8,6:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2229 chr19 962513 . C CTTTT 0 PASS DP=39;GPV=1;SPV=0.041461;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,7:7,5:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2230 chr19 2321098 . GC G 0 PASS DP=64;GPV=1;SPV=0.053635;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:31,5:10,3:21,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2231 chr19 2605507 . CT C 0 PASS DP=33;GPV=1;SPV=0.081016;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,7:7,4:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2232 chr19 3363275 . T A 0 PASS DP=22;GPV=1;SPV=0.16667;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:3,3:2,1:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2233 chr19 3954562 . C CT 0 PASS DP=32;GPV=1;SPV=0.07564;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:10,3:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2234 chr19 4475891 . CT C 0 PASS DP=42;GPV=1;SPV=7.8301e-05;SS=2;SSC=41;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:11,15:8,5:3,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2235 chr19 4568915 . C CA 0 PASS DP=44;GPV=1;SPV=0.0072004;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,9:9,7:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2236 chr19 5324226 . C CA 0 PASS DP=27;GPV=1;SPV=0.13561;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:12,4:1,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2237 chr19 5409321 . A T 0 PASS DP=60;GPV=1;SPV=0.010783;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:24,10:14,6:10,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2238 chr19 6192071 . C CA 0 PASS DP=31;GPV=1;SPV=0.024887;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:4,7:0,6:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2239 chr19 6288169 . C CTTT 0 PASS DP=34;GPV=1;SPV=0.040535;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,8:8,7:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2240 chr19 7036981 . T C 0 PASS DP=53;GPV=1;SPV=0.048297;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,7:8,1:10,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2241 chr19 7037326 . G A 0 PASS DP=21;GPV=1;SPV=0.063246;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:4,3:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2242 chr19 7152391 . A G 0 PASS DP=50;GPV=1;SPV=0.17768;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:11,2:18,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2243 chr19 7437635 . A ATTTCTTTTTT 0 PASS DP=54;GPV=1;SPV=0.025544;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:24,11:8,4:16,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2244 chr19 7605147 . G GGTGTGTGTGTGTGTGTGT 0 PASS DP=49;GPV=1;SPV=0.036132;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,8:5,3:11,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2245 chr19 7736445 . TTTCCTTCC T 0 PASS DP=55;GPV=1;SPV=0.0071642;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:19,14:6,2:13,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2246 chr19 8235007 . C CTT 0 PASS DP=19;GPV=1;SPV=0.016317;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:2,5:1,4:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2247 chr19 8587333 . C CT 0 PASS DP=24;GPV=1;SPV=0.11304;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,4:4,2:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2248 chr19 8617496 . C T 0 PASS DP=63;GPV=1;SPV=0.0010146;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:26,12:18,3:8,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2249 chr19 8774409 . G T 0 PASS DP=62;GPV=1;SPV=0.047407;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:28,5:21,3:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2250 chr19 8780062 . T C 0 PASS DP=77;GPV=1;SPV=0.073644;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:47,7:11,3:36,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2251 chr19 9108117 . CTTTTTTT C 0 PASS DP=21;GPV=1;SPV=0.069231;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,4:3,3:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2252 chr19 9416663 . C CT 0 PASS DP=22;GPV=1;SPV=0.097744;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:3,2:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2253 chr19 9619920 . TC T 0 PASS DP=85;GPV=1;SPV=0.036334;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:44,6:25,4:19,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2254 chr19 9877543 . T A 0 PASS DP=44;GPV=1;SPV=0.31818;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:5,2:2,1:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2255 chr19 10253470 . C A 0 PASS DP=35;GPV=1;SPV=0.026224;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:4,6:3,2:1,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2256 chr19 10439982 . C CTTT 0 PASS DP=47;GPV=1;SPV=0.0082728;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,10:6,8:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2257 chr19 10860840 . C CA 0 PASS DP=40;GPV=1;SPV=0.036085;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:19,8:15,6:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2258 chr19 11533899 . T TA 0 PASS DP=38;GPV=1;SPV=0.0061425;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,7:11,2:2,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2259 chr19 11605080 . C CTT 0 PASS DP=20;GPV=1;SPV=0.10217;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:6,3:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2260 chr19 11825791 . C CTTT 0 PASS DP=41;GPV=1;SPV=0.00504;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,7:6,6:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2261 chr19 12506933 . CAAA C 0 PASS DP=26;GPV=1;SPV=0.022074;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:3,3:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2262 chr19 12602081 . C T 0 PASS DP=57;GPV=1;SPV=0.024972;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:26,6:18,2:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2263 chr19 13334593 . T G 0 PASS DP=29;GPV=1;SPV=0.083011;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,5:2,2:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2264 chr19 14689100 . G T 0 PASS DP=55;GPV=1;SPV=0.01933;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:27,8:16,5:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2265 chr19 15088907 . CAGAT C 0 PASS DP=31;GPV=1;SPV=0.030629;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,8:5,5:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2266 chr19 15088982 . TG T 0 PASS DP=29;GPV=1;SPV=0.12884;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:12,3:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2267 chr19 15099150 . AAAGGG A 0 PASS DP=39;GPV=1;SPV=0.14395;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,4:11,1:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2268 chr19 16061298 . T TTTTTTTAAACAGGATC 0 PASS DP=43;GPV=1;SPV=0.00033903;SS=2;SSC=34;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:13,12:9,8:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2269 chr19 17031553 . C CGT 0 PASS DP=46;GPV=1;SPV=0.063391;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:24,6:13,5:11,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2270 chr19 17370001 . T TA 0 PASS DP=47;GPV=1;SPV=0.040129;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:20,10:12,6:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2271 chr19 17754131 . G C 0 PASS DP=81;GPV=1;SPV=3.9329e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:22,13:11,6:11,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2272 chr19 17918501 . G A 0 PASS DP=38;GPV=1;SPV=0.14395;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:9,2:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2273 chr19 18222657 . TTCTCTCTCTCTC T 0 PASS DP=29;GPV=1;SPV=0.031734;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:5,10:0,4:5,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2274 chr19 18902360 . A C 0 PASS DP=56;GPV=1;SPV=5.4482e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:16,12:7,5:9,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2275 chr19 18937308 . T TAAA 0 PASS DP=26;GPV=1;SPV=0.0008238;SS=2;SSC=30;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:5,8:4,7:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2276 chr19 20163916 . C T 0 PASS DP=47;GPV=1;SPV=0.010901;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:15,12:7,10:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2277 chr19 20249584 . T TTC 0 PASS DP=44;GPV=1;SPV=0.037194;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,7:5,4:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2278 chr19 21482642 . C CAAA 0 PASS DP=35;GPV=1;SPV=0.041466;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,6:4,4:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2279 chr19 21535437 . T C 0 PASS DP=40;GPV=1;SPV=0.29987;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:11,1:15,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2280 chr19 21548710 . ATTTT A 0 PASS DP=30;GPV=1;SPV=0.10277;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,5:7,3:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2281 chr19 22783712 . C A 0 PASS DP=68;GPV=1;SPV=0.00035871;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:29,18:15,11:14,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2282 chr19 22991841 . TG T 0 PASS DP=45;GPV=1;SPV=0.0095299;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:16,13:10,7:6,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2283 chr19 23413237 . C CTT 0 PASS DP=35;GPV=1;SPV=0.021615;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,7:9,4:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2284 chr19 24400418 . C T 0 PASS DP=158;GPV=1;SPV=0.017809;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:94:72,22:32,14:40,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2285 chr19 24402598 . ACT A 0 PASS DP=161;GPV=1;SPV=0.0096107;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:87:69,18:35,9:34,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2286 chr19 24435868 . C G 0 PASS DP=299;GPV=1;SPV=0.031613;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:171:148,23:41,11:107,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2287 chr19 24436165 . G C 0 PASS DP=81;GPV=1;SPV=0.082694;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:45,5:6,3:39,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2288 chr19 24438581 . G A 0 PASS DP=151;GPV=1;SPV=0.042011;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:91:75,16:35,7:40,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2289 chr19 26389831 . A C 0 PASS DP=19;GPV=1;SPV=0.085139;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:7,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2290 chr19 27354774 . T C 0 PASS DP=201;GPV=1;SPV=0.0043657;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:127:95,32:49,13:46,19
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2291 chr19 28206805 . AAAGG A 0 PASS DP=38;GPV=1;SPV=0.037681;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:8,7:2,2:6,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2292 chr19 29151695 . G GAGAA 0 PASS DP=38;GPV=1;SPV=0.26815;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,3:9,2:9,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2293 chr19 29423409 . A ATG 0 PASS DP=60;GPV=1;SPV=0.012239;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:16,6:7,3:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2294 chr19 29426679 . GT G 0 PASS DP=51;GPV=1;SPV=0.041061;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:19,10:8,6:11,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2295 chr19 31354256 . G A 0 PASS DP=77;GPV=1;SPV=0.086665;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:43,5:24,3:19,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2296 chr19 31530696 . G GA 0 PASS DP=53;GPV=1;SPV=0.034267;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:19,10:6,9:13,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2297 chr19 32399209 . G GA 0 PASS DP=36;GPV=1;SPV=0.052941;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:5,8:3,7:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2298 chr19 32511717 . T C 0 PASS DP=51;GPV=1;SPV=0.034367;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:13,4:9,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2299 chr19 32591635 . G A 0 PASS DP=70;GPV=1;SPV=0.12674;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:42,5:16,4:26,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2300 chr19 32591639 . C T 0 PASS DP=67;GPV=1;SPV=0.09386;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:40,6:15,5:25,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2301 chr19 33618669 . C T 0 PASS DP=27;GPV=1;SPV=0.018803;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:5,3:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2302 chr19 33876432 . C CAAAAAA 0 PASS DP=27;GPV=1;SPV=0.10733;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,6:6,5:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2303 chr19 34101461 . C CA 0 PASS DP=53;GPV=1;SPV=0.055222;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,4:12,3:10,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2304 chr19 36253979 . C G 0 PASS DP=72;GPV=1;SPV=0.0059495;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:35,10:20,5:15,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2305 chr19 36281823 . G A 0 PASS DP=30;GPV=1;SPV=0.17679;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:16,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2306 chr19 36281824 . A C 0 PASS DP=27;GPV=1;SPV=0.17436;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:14,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2307 chr19 36281826 . C CAA 0 PASS DP=28;GPV=1;SPV=0.1893;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:15,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2308 chr19 36491329 . C G 0 PASS DP=64;GPV=1;SPV=0.040749;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:29,14:17,12:12,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2309 chr19 37294646 . G A 0 PASS DP=1989;GPV=1;SPV=0.010233;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:1137:1016,121:301,51:715,70
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2310 chr19 38240318 . A C 0 PASS DP=42;GPV=1;SPV=0.0043101;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,7:9,4:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2311 chr19 39102118 . T TCACACACACACA 0 PASS DP=42;GPV=1;SPV=0.083787;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:22,6:14,2:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2312 chr19 39121578 . C CTTT 0 PASS DP=22;GPV=1;SPV=0.11947;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,4:9,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2313 chr19 39255782 . CT C 0 PASS DP=30;GPV=1;SPV=0.065277;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,6:9,5:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2314 chr19 39794164 . C CAAA 0 PASS DP=39;GPV=1;SPV=0.020557;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,6:7,5:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2315 chr19 39886594 . G C 0 PASS DP=81;GPV=1;SPV=0.061837;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:40,5:14,3:26,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2316 chr19 40183967 . CA C 0 PASS DP=53;GPV=1;SPV=0.0054076;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:17,13:7,6:10,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2317 chr19 40317715 . C CTGTTTTTTTTT 0 PASS DP=42;GPV=1;SPV=0.021089;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:15,11:10,6:5,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2318 chr19 40418215 . CT C 0 PASS DP=52;GPV=1;SPV=0.0047113;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:4,8:0,1:4,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2319 chr19 40695350 . G A 0 PASS DP=48;GPV=1;SPV=0.099229;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:26,5:15,1:11,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2320 chr19 40781308 . AAATG A 0 PASS DP=45;GPV=1;SPV=0.0076667;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,7:6,4:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2321 chr19 41060381 . A AAGAAAGATAGATAGATAGATAGAT 0 PASS DP=39;GPV=1;SPV=0.04669;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,7:13,3:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2322 chr19 41103469 . C T 0 PASS DP=63;GPV=1;SPV=0.13808;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:24,2:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2323 chr19 41909699 . C T 0 PASS DP=59;GPV=1;SPV=0.010119;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:29,10:11,7:18,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2324 chr19 42615273 . T A 0 PASS DP=52;GPV=1;SPV=0.0018992;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,10:8,5:12,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2325 chr19 42816574 . T C 0 PASS DP=79;GPV=1;SPV=0.04391;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:42,11:24,6:18,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2326 chr19 43393074 . G GGGAAGGAAGGAAGGAA 0 PASS DP=45;GPV=1;SPV=0.046752;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,7:10,5:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2327 chr19 43568977 . TA T 0 PASS DP=44;GPV=1;SPV=0.001098;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:12,15:7,8:5,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2328 chr19 43709954 . A T 0 PASS DP=54;GPV=1;SPV=0.0068571;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,6:11,3:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2329 chr19 43786294 . C T 0 PASS DP=66;GPV=1;SPV=0.46154;SS=2;SSC=3;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:7,2:3,1:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2330 chr19 44016948 . CTTT C 0 PASS DP=26;GPV=1;SPV=0.029565;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:6,5:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2331 chr19 44719936 . C CACACACAT 0 PASS DP=19;GPV=1;SPV=0.028571;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:0,3:0,0:0,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2332 chr19 44764193 . AG A 0 PASS DP=31;GPV=1;SPV=0.23248;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:17,4:1,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2333 chr19 45325902 . G T 0 PASS DP=49;GPV=1;SPV=0.11976;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:16,5:12,4:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2334 chr19 46129307 . TTG T 0 PASS DP=50;GPV=1;SPV=0.038543;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:23,13:14,10:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2335 chr19 47051638 . A T 0 PASS DP=66;GPV=1;SPV=0.0048053;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:24,14:9,11:15,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2336 chr19 47368298 . CT C 0 PASS DP=21;GPV=1;SPV=0.11947;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:4,2:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2337 chr19 47431677 . AAAAC A 0 PASS DP=30;GPV=1;SPV=0.46667;SS=2;SSC=3;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:5,2:2,1:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2338 chr19 47579397 . T G 0 PASS DP=51;GPV=1;SPV=0.049139;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,6:10,4:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2339 chr19 47774924 . A AT 0 PASS DP=31;GPV=1;SPV=0.037648;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,7:3,5:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2340 chr19 47938818 . A C 0 PASS DP=20;GPV=1;SPV=0.0032151;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:9:2,7:2,6:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2341 chr19 47963898 . TTTTCTTTTC T 0 PASS DP=48;GPV=1;SPV=0.06407;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,5:8,3:15,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2342 chr19 48543966 . A AGC 0 PASS DP=28;GPV=1;SPV=0.20757;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:14,3:1,0:13,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2343 chr19 48684183 . G GA 0 PASS DP=29;GPV=1;SPV=0.048379;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,8:8,6:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2344 chr19 48729709 . CT C 0 PASS DP=34;GPV=1;SPV=0.024476;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:2,5:2,2:0,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2345 chr19 49742496 . C CT 0 PASS DP=36;GPV=1;SPV=0.02043;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,7:10,3:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2346 chr19 50133090 . C T 0 PASS DP=46;GPV=1;SPV=0.086635;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:24,5:17,1:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2347 chr19 50172889 . GA G 0 PASS DP=38;GPV=1;SPV=0.0041488;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,10:7,7:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2348 chr19 50277917 . CA C 0 PASS DP=45;GPV=1;SPV=0.02275;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,9:12,6:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2349 chr19 50641888 . A T 0 PASS DP=61;GPV=1;SPV=0.0019875;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:22,8:14,5:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2350 chr19 50786867 . C T 0 PASS DP=46;GPV=1;SPV=0.008557;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:14,12:9,6:5,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2351 chr19 50918309 . T TTAGA 0 PASS DP=58;GPV=1;SPV=0.019608;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:25,11:14,7:11,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2352 chr19 51405410 . T C 0 PASS DP=45;GPV=1;SPV=0.28173;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:11,4:7,3:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2353 chr19 51854496 . A ATTTTTTT 0 PASS DP=28;GPV=1;SPV=0.049275;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:5,4:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2354 chr19 52508893 . ATTT A 0 PASS DP=29;GPV=1;SPV=0.042556;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,7:8,4:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2355 chr19 52695639 . CT C 0 PASS DP=27;GPV=1;SPV=0.049428;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,7:4,3:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2356 chr19 53111340 . C CTT 0 PASS DP=31;GPV=1;SPV=0.020843;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,6:9,5:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2357 chr19 53482722 . T G 0 PASS DP=34;GPV=1;SPV=0.042724;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:5,3:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2358 chr19 53782098 . CTCTTT C 0 PASS DP=48;GPV=1;SPV=0.14084;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:16,1:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2359 chr19 53913785 . T TA 0 PASS DP=34;GPV=1;SPV=0.040384;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:9,9:7,7:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2360 chr19 54004334 . TTTGTGTGTGTGTGTGTG T 0 PASS DP=34;GPV=1;SPV=0.048994;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:8,4:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2361 chr19 54894564 . T C 0 PASS DP=28;GPV=1;SPV=0.088889;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:9,3:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2362 chr19 55178753 . ATTTT A 0 PASS DP=22;GPV=1;SPV=0.05418;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,4:2,3:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2363 chr19 55270937 . C T 0 PASS DP=65;GPV=1;SPV=0.001961;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:29,12:17,9:12,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2364 chr19 55463403 . G A 0 PASS DP=70;GPV=1;SPV=0.0010937;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:31,13:15,6:16,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2365 chr19 55768578 . G A 0 PASS DP=75;GPV=1;SPV=0.10111;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:46,6:28,5:18,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2366 chr19 55853883 . ATCTCTT A 0 PASS DP=58;GPV=1;SPV=0.09513;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:32,5:15,1:17,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2367 chr19 55853907 . TTCTC T 0 PASS DP=49;GPV=1;SPV=0.089104;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:26,5:12,1:14,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2368 chr19 56037693 . CA C 0 PASS DP=32;GPV=1;SPV=0.0071858;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:8,3:3,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2369 chr19 56218050 . C CTTTTTTTTTT 0 PASS DP=33;GPV=1;SPV=0.072149;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,5:8,4:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2370 chr19 56850512 . G C 0 PASS DP=91;GPV=1;SPV=0.00021701;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:40,15:22,6:18,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2371 chr19 56947032 . A G 0 PASS DP=18;GPV=1;SPV=0.22727;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:4,2:2,1:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2372 chr19 56973386 . A G 0 PASS DP=40;GPV=1;SPV=0.01971;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:10,9:5,5:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2373 chr19 57104244 . G GGTTTTGTTTT 0 PASS DP=60;GPV=1;SPV=0.025815;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:19,8:10,4:9,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2374 chr19 57843567 . G T 0 PASS DP=27;GPV=1;SPV=0.032869;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:4,4:2,1:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2375 chr19 58037161 . T C 0 PASS DP=59;GPV=1;SPV=0.0016548;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:25,12:11,6:14,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2376 chr19 58427343 . C CTT 0 PASS DP=45;GPV=1;SPV=0.15775;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:15,8:1,1:14,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2377 chr19 58427348 . TC T 0 PASS DP=40;GPV=1;SPV=0.26877;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:13,6:2,2:11,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2378 chr19 58427358 . C CTCT 0 PASS DP=37;GPV=1;SPV=0.062683;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,5:1,1:15,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2379 chr19 58427361 . T C 0 PASS DP=43;GPV=1;SPV=0.15679;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,4:4,1:19,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2380 chr19 58605246 . T C 0 PASS DP=37;GPV=1;SPV=0.014514;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,9:4,3:8,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2381 chr2 238259 . T TTG 0 PASS DP=42;GPV=1;SPV=0.0044123;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:8,15:6,9:2,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2382 chr2 583086 . GGCC G 0 PASS DP=57;GPV=1;SPV=0.029601;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:27,13:11,4:16,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2383 chr2 597535 . C G 0 PASS DP=85;GPV=1;SPV=0.0089356;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:43,9:20,3:23,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2384 chr2 739644 . G GA 0 PASS DP=59;GPV=1;SPV=0.0049268;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:24,19:13,11:11,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2385 chr2 750206 . G GTTTATTTTATTTTATTTTAT 0 PASS DP=51;GPV=1;SPV=0.056363;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:28,8:13,5:15,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2386 chr2 797194 . G A 0 PASS DP=81;GPV=1;SPV=0.055492;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:45,6:27,3:18,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2387 chr2 939932 . C CTA 0 PASS DP=71;GPV=1;SPV=0.033642;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:41,9:19,4:22,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2388 chr2 1027475 . A G 0 PASS DP=47;GPV=1;SPV=0.026369;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,8:6,4:12,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2389 chr2 1143750 . G A 0 PASS DP=56;GPV=1;SPV=0.24882;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:36,4:19,3:17,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2390 chr2 1255843 . AAT A 0 PASS DP=35;GPV=1;SPV=0.21107;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:19,5:7,3:12,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2391 chr2 1262694 . C A 0 PASS DP=39;GPV=1;SPV=0.13105;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,5:8,2:13,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2392 chr2 1323547 . A G 0 PASS DP=51;GPV=1;SPV=0.16049;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:31,5:15,1:16,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2393 chr2 1509725 . G GCCCACCCTCTTTTTTCAGGGATAC 0 PASS DP=37;GPV=1;SPV=0.17449;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,5:11,2:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2394 chr2 1706834 . C T 0 PASS DP=55;GPV=1;SPV=0.035448;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:26,12:11,9:15,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2395 chr2 1780382 . T C 0 PASS DP=28;GPV=1;SPV=0.46667;SS=2;SSC=3;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:5,2:2,1:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2396 chr2 2004320 . G T 0 PASS DP=27;GPV=1;SPV=0.062714;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:6,3:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2397 chr2 2561206 . C CTGTG 0 PASS DP=73;GPV=1;SPV=0.016345;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:28,14:12,2:16,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2398 chr2 2953278 . T C 0 PASS DP=68;GPV=1;SPV=0.0039495;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:33,12:20,7:13,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2399 chr2 3049625 . A AATATATATAT 0 PASS DP=19;GPV=1;SPV=0.05418;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,4:4,2:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2400 chr2 3775110 . CTGAGCTAGGCAGCTGTGGCTG C 0 PASS DP=46;GPV=1;SPV=0.091614;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:7,2:15,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2401 chr2 4260661 . TTA T 0 PASS DP=40;GPV=1;SPV=0.0014993;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:7,14:4,6:3,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2402 chr2 4926342 . TTTTA T 0 PASS DP=84;GPV=1;SPV=0.019292;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:36,16:12,5:24,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2403 chr2 4974165 . GAGGGTGTTT G 0 PASS DP=39;GPV=1;SPV=0.01494;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,8:6,2:6,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2404 chr2 5561566 . T C 0 PASS DP=46;GPV=1;SPV=0.086635;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:24,5:10,2:14,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2405 chr2 5652595 . G C 0 PASS DP=90;GPV=1;SPV=7.0026e-06;SS=2;SSC=51;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:31,16:16,11:15,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2406 chr2 6420993 . CAAA C 0 PASS DP=39;GPV=1;SPV=0.016738;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:14,12:10,10:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2407 chr2 6651481 . CAAAA C 0 PASS DP=24;GPV=1;SPV=0.070652;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:6,3:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2408 chr2 7165540 . C CAGATAGATAGATAGAT 0 PASS DP=56;GPV=1;SPV=0.002598;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:21,17:11,6:10,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2409 chr2 7261995 . ATT A 0 PASS DP=46;GPV=1;SPV=0.014003;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:18,13:13,8:5,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2410 chr2 8092204 . GAAAGAAAGAAAGA G 0 PASS DP=44;GPV=1;SPV=0.15083;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:19,2:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2411 chr2 8324335 . G C 0 PASS DP=77;GPV=1;SPV=0.00017063;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:33,18:12,11:21,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2412 chr2 9254298 . A G 0 PASS DP=27;GPV=1;SPV=0.034045;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:6,3:5,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2413 chr2 9499113 . C T 0 PASS DP=44;GPV=1;SPV=0.37564;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:12,4:6,3:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2414 chr2 9989124 . G A 0 PASS DP=84;GPV=1;SPV=0.010163;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:60:39,21:21,9:18,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2415 chr2 9998827 . T C 0 PASS DP=43;GPV=1;SPV=0.21465;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:11,5:10,1:1,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2416 chr2 10181750 . CTCTCTTTTT C 0 PASS DP=26;GPV=1;SPV=0.091949;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,6:6,5:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2417 chr2 10291618 . T C 0 PASS DP=52;GPV=1;SPV=0.1356;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:32,6:11,3:21,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2418 chr2 10809668 . A AAC 0 PASS DP=32;GPV=1;SPV=0.059497;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:9,9:7,5:2,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2419 chr2 10902465 . T C 0 PASS DP=97;GPV=1;SPV=0.01018;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:41,9:26,7:15,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2420 chr2 12772913 . T A 0 PASS DP=60;GPV=1;SPV=0.069855;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:35,7:21,3:14,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2421 chr2 14073665 . C CT 0 PASS DP=51;GPV=1;SPV=0.0086143;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:20,13:12,8:8,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2422 chr2 14567980 . G C 0 PASS DP=67;GPV=1;SPV=0.1371;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:17,6:9,4:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2423 chr2 16018180 . C CCT 0 PASS DP=46;GPV=1;SPV=0.2;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:1,2:0,0:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2424 chr2 16832369 . CT C 0 PASS DP=30;GPV=1;SPV=0.0067079;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:3,10:2,9:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2425 chr2 17477961 . G GA 0 PASS DP=27;GPV=1;SPV=0.083011;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,5:5,4:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2426 chr2 17530584 . CAAAAAAAA C 0 PASS DP=29;GPV=1;SPV=0.14757;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,5:6,4:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2427 chr2 18050699 . A AT 0 PASS DP=43;GPV=1;SPV=0.037585;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:17,15:10,11:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2428 chr2 18755763 . T A 0 PASS DP=32;GPV=1;SPV=0.046518;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:7,5:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2429 chr2 19070434 . G GTTT 0 PASS DP=48;GPV=1;SPV=0.10396;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:25,5:20,4:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2430 chr2 20102735 . A G 0 PASS DP=57;GPV=1;SPV=0.047734;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:31,7:23,4:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2431 chr2 21286995 . AT A 0 PASS DP=35;GPV=1;SPV=0.01473;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:11,14:4,2:7,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2432 chr2 21353165 . G GGTGTGTGTGTGT 0 PASS DP=37;GPV=1;SPV=0.004133;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:10,12:5,8:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2433 chr2 21895316 . G C 0 PASS DP=79;GPV=1;SPV=5.242e-06;SS=2;SSC=52;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:28,21:13,11:15,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2434 chr2 22517357 . ATATG A 0 PASS DP=50;GPV=1;SPV=0.057585;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:18,7:13,1:5,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2435 chr2 22743819 . GGATAGATAGATAGATAGATAGATAGATAGATA G 0 PASS DP=51;GPV=1;SPV=0.069354;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:24,5:16,3:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2436 chr2 22747322 . CAAA C 0 PASS DP=35;GPV=1;SPV=0.02914;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:5,6:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2437 chr2 23120689 . G A 0 PASS DP=77;GPV=1;SPV=0.10244;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:26,8:15,7:11,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2438 chr2 23640965 . G T 0 PASS DP=76;GPV=1;SPV=0.093123;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:46,6:21,3:25,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2439 chr2 24106316 . C CTT 0 PASS DP=30;GPV=1;SPV=0.29231;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,4:16,4:1,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2440 chr2 25632192 . C A 0 PASS DP=48;GPV=1;SPV=0.083396;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:20,6:16,1:4,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2441 chr2 25661744 . A T 0 PASS DP=81;GPV=1;SPV=2.0987e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:32,22:17,13:15,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2442 chr2 25884694 . T TA 0 PASS DP=26;GPV=1;SPV=0.044851;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,9:4,8:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2443 chr2 28334847 . C T 0 PASS DP=87;GPV=1;SPV=0.080744;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:60:20,5:11,4:9,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2444 chr2 28511788 . C CTTTTTTTTT 0 PASS DP=35;GPV=1;SPV=0.15773;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,4:11,3:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2445 chr2 30143186 . CA C 0 PASS DP=42;GPV=1;SPV=0.0038562;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,10:10,9:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2446 chr2 30712644 . CT C 0 PASS DP=45;GPV=1;SPV=0.17119;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:20,8:18,4:2,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2447 chr2 32200845 . T A 0 PASS DP=74;GPV=1;SPV=0.15649;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:49,6:29,2:20,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2448 chr2 32271536 . TAG T 0 PASS DP=38;GPV=1;SPV=0.2607;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:23,5:12,4:11,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2449 chr2 32389989 . A T 0 PASS DP=73;GPV=1;SPV=0.00014297;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:28,14:12,8:16,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2450 chr2 32646557 . G GT 0 PASS DP=43;GPV=1;SPV=0.011343;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:14,16:8,10:6,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2451 chr2 33244860 . T TTATCTATCTATCTATC 0 PASS DP=63;GPV=1;SPV=0.082021;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:38,7:26,3:12,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2452 chr2 33428495 . CTTTT C 0 PASS DP=36;GPV=1;SPV=0.20705;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,5:7,4:9,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2453 chr2 33709749 . A ATT 0 PASS DP=36;GPV=1;SPV=0.048713;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:13,10:7,9:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2454 chr2 34292459 . T C 0 PASS DP=61;GPV=1;SPV=0.080979;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:35,6:11,3:24,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2455 chr2 35418835 . AATTG A 0 PASS DP=39;GPV=1;SPV=0.13971;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,4:12,1:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2456 chr2 37153339 . T C 0 PASS DP=30;GPV=1;SPV=0.020843;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:6,3:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2457 chr2 37585207 . C A 0 PASS DP=55;GPV=1;SPV=0.0090365;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:15,11:6,7:9,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2458 chr2 38403856 . A G 0 PASS DP=43;GPV=1;SPV=0.0042182;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:14,14:7,4:7,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2459 chr2 39044866 . A G 0 PASS DP=73;GPV=1;SPV=0.08134;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:40,5:20,3:20,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2460 chr2 39773575 . AT A 0 PASS DP=51;GPV=1;SPV=0.069699;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:27,6:16,3:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2461 chr2 39841978 . A G 0 PASS DP=62;GPV=1;SPV=0.11483;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:38,6:15,4:23,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2462 chr2 39872346 . ATTTCTTTCTTTCTTTC A 0 PASS DP=47;GPV=1;SPV=0.0035488;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:14,12:2,1:12,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2463 chr2 40219875 . A AT 0 PASS DP=24;GPV=1;SPV=0.16587;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,5:7,4:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2464 chr2 42076342 . A G 0 PASS DP=48;GPV=1;SPV=0.038709;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:23,6:21,5:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2465 chr2 42076351 . GAAAGAAAA G 0 PASS DP=48;GPV=1;SPV=0.059999;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:25,6:23,5:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2466 chr2 42717127 . GTT G 0 PASS DP=30;GPV=1;SPV=0.048872;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,5:5,4:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2467 chr2 43274998 . C T 0 PASS DP=51;GPV=1;SPV=0.031264;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:12,6:7,3:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2468 chr2 43635551 . G A 0 PASS DP=68;GPV=1;SPV=0.03639;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:32,9:9,2:23,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2469 chr2 43724370 . T A 0 PASS DP=78;GPV=1;SPV=6.196e-09;SS=2;SSC=82;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:19,32:6,16:13,16
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2470 chr2 43754869 . C CTT 0 PASS DP=32;GPV=1;SPV=0.024674;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,9:7,5:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2471 chr2 43980553 . C CA 0 PASS DP=49;GPV=1;SPV=0.1396;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:24,5:19,2:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2472 chr2 44113489 . A C 0 PASS DP=44;GPV=1;SPV=0.27778;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:3,2:2,1:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2473 chr2 44125392 . C CTT 0 PASS DP=31;GPV=1;SPV=0.048379;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:11,7:6,5:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2474 chr2 44410247 . AT A 0 PASS DP=33;GPV=1;SPV=0.029799;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:6,5:3,3:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2475 chr2 44542496 . T TACAC 0 PASS DP=51;GPV=1;SPV=0.035453;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:25,10:20,9:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2476 chr2 44828126 . A ATT 0 PASS DP=46;GPV=1;SPV=0.0021156;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:17,11:5,8:12,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2477 chr2 46855219 . C CCT 0 PASS DP=44;GPV=1;SPV=0.015711;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:7,6:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2478 chr2 46978562 . T TAAAAAAAAAA 0 PASS DP=43;GPV=1;SPV=0.0091635;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:11,5:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2479 chr2 47288788 . C G 0 PASS DP=66;GPV=1;SPV=0.0099736;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:26,6:20,4:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2480 chr2 47290841 . CA C 0 PASS DP=26;GPV=1;SPV=0.024256;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:7,10:5,9:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2481 chr2 47323077 . T C 0 PASS DP=46;GPV=1;SPV=0.077519;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:12,3:9,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2482 chr2 47323092 . T C 0 PASS DP=50;GPV=1;SPV=0.088906;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:11,3:13,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2483 chr2 48177831 . C CA 0 PASS DP=41;GPV=1;SPV=0.11076;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,4:14,2:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2484 chr2 49110400 . C A 0 PASS DP=57;GPV=1;SPV=0.025962;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:31,10:18,2:13,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2485 chr2 49604146 . A AACACAC 0 PASS DP=68;GPV=1;SPV=0.0034722;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:28,15:15,7:13,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2486 chr2 50239662 . GTATATATATATATA G 0 PASS DP=19;GPV=1;SPV=0.052941;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,4:5,3:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2487 chr2 50984134 . A ATT 0 PASS DP=36;GPV=1;SPV=0.27607;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,4:6,2:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2488 chr2 51504653 . C T 0 PASS DP=56;GPV=1;SPV=0.049428;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:8,7:3,4:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2489 chr2 51854925 . G A 0 PASS DP=49;GPV=1;SPV=0.024419;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,10:7,4:10,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2490 chr2 51854926 . T C 0 PASS DP=50;GPV=1;SPV=0.020195;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,10:6,4:11,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2491 chr2 52275815 . C CGTGTGTGTGTGTGTGTGTGTGTGTGTGT 0 PASS DP=61;GPV=1;SPV=0.16269;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:39,6:19,5:20,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2492 chr2 52320713 . C G 0 PASS DP=59;GPV=1;SPV=0.024823;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:23,11:14,3:9,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2493 chr2 52581829 . CAAAAAAAAAAAAAAAA C 0 PASS DP=36;GPV=1;SPV=0.03895;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,9:8,5:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2494 chr2 52585110 . T C 0 PASS DP=64;GPV=1;SPV=4.2445e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:16,27:6,14:10,13
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2495 chr2 53393256 . C CTATATATA 0 PASS DP=40;GPV=1;SPV=0.048309;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:9,11:6,6:3,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2496 chr2 53718203 . G A 0 PASS DP=51;GPV=1;SPV=4.2116e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:14,24:8,17:6,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2497 chr2 54058837 . T G 0 PASS DP=69;GPV=1;SPV=0.015228;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:37,10:25,5:12,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2498 chr2 55367528 . G GTTTTTTTTTTTTTTGTTT 0 PASS DP=25;GPV=1;SPV=0.016624;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:5,8:3,7:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2499 chr2 56257146 . C CT 0 PASS DP=82;GPV=1;SPV=0.024868;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:45,8:27,3:18,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2500 chr2 56617423 . GTA G 0 PASS DP=42;GPV=1;SPV=0.094934;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:15,3:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2501 chr2 56617441 . A G 0 PASS DP=37;GPV=1;SPV=0.030844;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,5:10,4:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2502 chr2 56617448 . TAC T 0 PASS DP=35;GPV=1;SPV=0.035819;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:11,4:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2503 chr2 58531968 . C T 0 PASS DP=64;GPV=1;SPV=0.11157;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:37,5:20,3:17,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2504 chr2 58973678 . CT C 0 PASS DP=39;GPV=1;SPV=0.0077789;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:16,12:8,9:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2505 chr2 59401041 . G GAAGAA 0 PASS DP=34;GPV=1;SPV=0.17436;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,4:12,3:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2506 chr2 59590866 . C CTTT 0 PASS DP=37;GPV=1;SPV=0.011574;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,9:9,7:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2507 chr2 60074575 . T TTTCCTTCC 0 PASS DP=57;GPV=1;SPV=0.011304;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:18,16:10,10:8,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2508 chr2 61104483 . A C 0 PASS DP=61;GPV=1;SPV=0.22727;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:4,2:3,1:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2509 chr2 61715319 . C CTT 0 PASS DP=36;GPV=1;SPV=0.037681;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:7,10:5,8:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2510 chr2 62115832 . T TTTCTTTC 0 PASS DP=52;GPV=1;SPV=0.044964;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:20,12:7,2:13,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2511 chr2 62562855 . T C 0 PASS DP=77;GPV=1;SPV=0.021815;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:44,10:29,6:15,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2512 chr2 63651474 . G C 0 PASS DP=63;GPV=1;SPV=0.018404;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:11,5:8,1:3,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2513 chr2 64589944 . TGGGGG T 0 PASS DP=31;GPV=1;SPV=0.037926;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:3,11:3,10:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2514 chr2 64802633 . GAA G 0 PASS DP=43;GPV=1;SPV=0.10445;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:25,7:17,3:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2515 chr2 65339112 . CG C 0 PASS DP=47;GPV=1;SPV=0.098394;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:10,2:13,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2516 chr2 65339119 . T G 0 PASS DP=38;GPV=1;SPV=0.10585;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:8,3:12,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2517 chr2 65363239 . CAA C 0 PASS DP=46;GPV=1;SPV=0.046124;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:20,13:15,9:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2518 chr2 65407245 . C CTTTTTTTTT 0 PASS DP=40;GPV=1;SPV=0.077118;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,6:13,3:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2519 chr2 65579406 . G T 0 PASS DP=100;GPV=1;SPV=0.00011122;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:62:45,17:17,5:28,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2520 chr2 68173576 . A AT 0 PASS DP=43;GPV=1;SPV=0.012445;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,10:7,6:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2521 chr2 68246067 . CTT C 0 PASS DP=23;GPV=1;SPV=0.026248;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,7:2,6:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2522 chr2 68621704 . G GGGAAGGAA 0 PASS DP=45;GPV=1;SPV=0.064595;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,5:11,4:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2523 chr2 69395436 . CTTTTT C 0 PASS DP=31;GPV=1;SPV=0.094071;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,5:8,2:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2524 chr2 71411446 . T A 0 PASS DP=68;GPV=1;SPV=0.035299;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:38,8:23,2:15,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2525 chr2 74707505 . A T 0 PASS DP=78;GPV=1;SPV=0.10307;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:30,7:11,1:19,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2526 chr2 75813568 . C CT 0 PASS DP=59;GPV=1;SPV=0.14969;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:36,5:18,2:18,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2527 chr2 76299016 . TCACACACACA T 0 PASS DP=52;GPV=1;SPV=0.22727;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:4,2:2,1:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2528 chr2 76675240 . CT C 0 PASS DP=29;GPV=1;SPV=0.016858;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:5,3:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2529 chr2 76703554 . C T 0 PASS DP=36;GPV=1;SPV=0.027005;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:13,12:7,6:6,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2530 chr2 76974139 . TAC T 0 PASS DP=47;GPV=1;SPV=0.013698;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,9:7,4:10,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2531 chr2 76974155 . CAT C 0 PASS DP=42;GPV=1;SPV=0.049965;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:4,3:15,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2532 chr2 77091680 . T G 0 PASS DP=78;GPV=1;SPV=0.028327;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:35,12:12,2:23,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2533 chr2 77178784 . A T 0 PASS DP=79;GPV=1;SPV=0.037745;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:37,5:21,1:16,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2534 chr2 78371002 . T G 0 PASS DP=43;GPV=1;SPV=0.10909;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:2,2:1,1:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2535 chr2 78880794 . C T 0 PASS DP=68;GPV=1;SPV=0.00051824;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:29,15:18,8:11,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2536 chr2 79081401 . G C 0 PASS DP=68;GPV=1;SPV=0.00034436;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:29,19:13,10:16,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2537 chr2 79501965 . C CTT 0 PASS DP=30;GPV=1;SPV=0.11832;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,5:8,4:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2538 chr2 81224895 . T TAAA 0 PASS DP=28;GPV=1;SPV=0.32408;SS=2;SSC=4;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:9,3:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2539 chr2 81976851 . C CTTT 0 PASS DP=21;GPV=1;SPV=0.029412;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:4,4:1,2:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2540 chr2 82868644 . CT C 0 PASS DP=27;GPV=1;SPV=0.037681;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,7:3,4:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2541 chr2 82868649 . T C 0 PASS DP=35;GPV=1;SPV=0.0036253;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,8:5,6:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2542 chr2 85410864 . T G 0 PASS DP=55;GPV=1;SPV=0.065982;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:14,4:2,1:12,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2543 chr2 85417477 . C CT 0 PASS DP=27;GPV=1;SPV=0.051084;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,5:7,5:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2544 chr2 85563192 . AT A 0 PASS DP=45;GPV=1;SPV=0.084902;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:8,2:13,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2545 chr2 86195416 . G C 0 PASS DP=90;GPV=1;SPV=0.00087116;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:44,15:26,9:18,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2546 chr2 86368498 . GA G 0 PASS DP=28;GPV=1;SPV=0.039683;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:0,4:0,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2547 chr2 86424227 . G C 0 PASS DP=75;GPV=1;SPV=4.1392e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:26,14:6,10:20,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2548 chr2 87177743 . C T 0 PASS DP=52;GPV=1;SPV=0.11622;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:17,1:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2549 chr2 87261110 . C T 0 PASS DP=77;GPV=1;SPV=0.040649;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:36,8:9,1:27,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2550 chr2 87361199 . T C 0 PASS DP=130;GPV=1;SPV=0.036213;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:77:68,9:33,5:35,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2551 chr2 87414607 . A C 0 PASS DP=46;GPV=1;SPV=0.031197;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,8:12,6:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2552 chr2 87688887 . TA T 0 PASS DP=33;GPV=1;SPV=0.0023953;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,9:7,7:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2553 chr2 87706870 . CT C 0 PASS DP=27;GPV=1;SPV=0.040741;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:3,3:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2554 chr2 87870077 . T C 0 PASS DP=69;GPV=1;SPV=0.030159;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:28,7:17,5:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2555 chr2 87973479 . C A 0 PASS DP=40;GPV=1;SPV=0.047817;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,8:11,6:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2556 chr2 89134598 . A AT 0 PASS DP=29;GPV=1;SPV=0.072149;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,5:7,3:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2557 chr2 90271018 . C T 0 PASS DP=32;GPV=1;SPV=0.13473;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:3,2:13,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2558 chr2 90356801 . T C 0 PASS DP=141;GPV=1;SPV=0.00099512;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:81:65,15:30,11:35,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2559 chr2 91427296 . C T 0 PASS DP=181;GPV=1;SPV=0.042733;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:111:90,21:46,16:44,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2560 chr2 91428718 . A G 0 PASS DP=55;GPV=1;SPV=0.10544;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:17,3:11,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2561 chr2 91523483 . A T 0 PASS DP=65;GPV=1;SPV=0.0055662;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:19,12:13,4:6,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2562 chr2 91523498 . G GGTGGCTTC 0 PASS DP=89;GPV=1;SPV=0.010388;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:36,6:16,3:20,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2563 chr2 91785317 . C G 0 PASS DP=148;GPV=1;SPV=0.034685;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:82:68,14:42,9:26,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2564 chr2 91880349 . GTCAGATCT G 0 PASS DP=128;GPV=1;SPV=0.00074948;SS=2;SSC=31;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:69:58,11:26,8:32,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2565 chr2 92248969 . C T 0 PASS DP=62;GPV=1;SPV=0.10169;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:35,5:34,2:1,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2566 chr2 92262987 . C T 0 PASS DP=56;GPV=1;SPV=0.16038;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:8,3:24,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2567 chr2 92330480 . G T 0 PASS DP=36;GPV=1;SPV=0.01393;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,7:8,1:6,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2568 chr2 92353193 . T A 0 PASS DP=459;GPV=1;SPV=0.024517;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:277:248,29:72,6:176,23
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2569 chr2 92353805 . C T 0 PASS DP=41;GPV=1;SPV=0.13115;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,5:0,2:23,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2570 chr2 92398925 . G A 0 PASS DP=17;GPV=1;SPV=0.20588;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:6,2:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2571 chr2 92471310 . A C 0 PASS DP=68;GPV=1;SPV=0.048399;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:30,7:29,7:1,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2572 chr2 92758805 . C A 0 PASS DP=50;GPV=1;SPV=0.069699;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:27,6:21,4:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2573 chr2 92790806 . T G 0 PASS DP=169;GPV=1;SPV=0.016861;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:99:86,13:22,3:64,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2574 chr2 92814334 . T C 0 PASS DP=27;GPV=1;SPV=0.057037;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:8,3:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2575 chr2 92889070 . T A 0 PASS DP=26;GPV=1;SPV=0.1592;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:1,0:12,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2576 chr2 92909789 . A T 0 PASS DP=39;GPV=1;SPV=0.33319;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:2,0:24,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2577 chr2 92948033 . C A 0 PASS DP=57;GPV=1;SPV=0.037062;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:28,6:20,4:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2578 chr2 92970138 . A C 0 PASS DP=45;GPV=1;SPV=0.011302;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:20,9:9,2:11,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2579 chr2 93179406 . T C 0 PASS DP=41;GPV=1;SPV=0.072233;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:7,2:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2580 chr2 93285132 . A G 0 PASS DP=45;GPV=1;SPV=0.11779;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:9,1:14,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2581 chr2 93480292 . T G 0 PASS DP=54;GPV=1;SPV=0.048788;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:24,8:16,5:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2582 chr2 93567150 . A G 0 PASS DP=85;GPV=1;SPV=0.037983;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:40,8:20,1:20,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2583 chr2 93567311 . C T 0 PASS DP=52;GPV=1;SPV=0.0069073;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:24,11:4,1:20,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2584 chr2 93587754 . C T 0 PASS DP=41;GPV=1;SPV=0.072233;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:6,1:12,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2585 chr2 93594667 . C G 0 PASS DP=85;GPV=1;SPV=0.046341;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:37,9:23,6:14,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2586 chr2 93641679 . A C 0 PASS DP=34;GPV=1;SPV=0.25735;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:19,3:18,3:1,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2587 chr2 93672946 . T C 0 PASS DP=49;GPV=1;SPV=0.034525;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:2,1:16,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2588 chr2 93852825 . A C 0 PASS DP=48;GPV=1;SPV=0.083225;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,5:6,4:19,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2589 chr2 93953668 . G C 0 PASS DP=168;GPV=1;SPV=0.018672;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:103:89,14:10,7:79,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2590 chr2 94141721 . G A 0 PASS DP=38;GPV=1;SPV=0.031109;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,7:8,1:5,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2591 chr2 94286439 . T C 0 PASS DP=416;GPV=1;SPV=0.016109;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:242:212,30:87,15:125,15
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2592 chr2 94636668 . A C 0 PASS DP=70;GPV=1;SPV=0.00064075;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:26,10:10,5:16,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2593 chr2 95041163 . G C 0 PASS DP=70;GPV=1;SPV=4.1656e-07;SS=2;SSC=63;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:16,15:13,9:3,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2594 chr2 95291901 . CTTAAATATATATATATACGTACATATATTTA C 0 PASS DP=49;GPV=1;SPV=0.059705;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:10,3:11,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2595 chr2 96779508 . C CA 0 PASS DP=41;GPV=1;SPV=0.0020026;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:10,12:7,10:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2596 chr2 97221605 . A G 0 PASS DP=50;GPV=1;SPV=0.046334;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:25,6:15,3:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2597 chr2 97793993 . CAA C 0 PASS DP=20;GPV=1;SPV=0.016783;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:3,6:2,5:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2598 chr2 97800595 . C CAAAAAAAAA 0 PASS DP=31;GPV=1;SPV=0.024887;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:3,8:2,6:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2599 chr2 98031629 . G C 0 PASS DP=61;GPV=1;SPV=0.0023617;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:15,11:9,5:6,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2600 chr2 99510713 . G A 0 PASS DP=50;GPV=1;SPV=0.019592;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:24,8:13,4:11,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2601 chr2 99643055 . A AT 0 PASS DP=36;GPV=1;SPV=0.020897;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,10:9,6:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2602 chr2 99648934 . C T 0 PASS DP=42;GPV=1;SPV=0.14559;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:23,6:10,1:13,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2603 chr2 99716882 . C CA 0 PASS DP=59;GPV=1;SPV=0.014854;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:23,14:13,6:10,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2604 chr2 101678129 . G A 0 PASS DP=43;GPV=1;SPV=0.16851;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,3:11,2:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2605 chr2 104882243 . A AT 0 PASS DP=45;GPV=1;SPV=0.0052174;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:7,12:3,7:4,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2606 chr2 105249282 . C CA 0 PASS DP=33;GPV=1;SPV=0.07699;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:11,3:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2607 chr2 105678576 . TTCCTTCCCGTGTTAGCTCGGTCA T 0 PASS DP=53;GPV=1;SPV=0.0015408;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,10:13,6:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2608 chr2 106451304 . T A 0 PASS DP=57;GPV=1;SPV=0.069378;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:8,3:18,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2609 chr2 106466890 . G A 0 PASS DP=26;GPV=1;SPV=0.086154;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:5,1:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2610 chr2 108769916 . C A 0 PASS DP=65;GPV=1;SPV=0.00047582;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:27,15:10,5:17,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2611 chr2 109066559 . C G 0 PASS DP=72;GPV=1;SPV=0.0011061;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:27,9:13,4:14,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2612 chr2 109075890 . T C 0 PASS DP=60;GPV=1;SPV=1.2423e-05;SS=2;SSC=49;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:15,12:9,7:6,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2613 chr2 109794608 . C CGGCCG 0 PASS DP=27;GPV=1;SPV=0.16725;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,4:9,4:1,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2614 chr2 110159886 . A C 0 PASS DP=58;GPV=1;SPV=0.037081;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:26,5:13,2:13,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2615 chr2 110318236 . C A 0 PASS DP=37;GPV=1;SPV=0.032095;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,6:9,5:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2616 chr2 110360672 . T G 0 PASS DP=31;GPV=1;SPV=0.12318;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:10,3:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2617 chr2 110619926 . G A 0 PASS DP=82;GPV=1;SPV=0.046584;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:47,7:27,1:20,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2618 chr2 111284730 . T C 0 PASS DP=56;GPV=1;SPV=0.015187;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:21,13:11,6:10,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2619 chr2 111285290 . G A 0 PASS DP=32;GPV=1;SPV=0.085095;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:6,1:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2620 chr2 111757049 . GAAGA G 0 PASS DP=32;GPV=1;SPV=0.11304;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:10,4:6,3:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2621 chr2 112433207 . ACC A 0 PASS DP=70;GPV=1;SPV=0.080505;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:34,4:20,1:14,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2622 chr2 112983898 . G A 0 PASS DP=68;GPV=1;SPV=0.025222;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:32,6:18,2:14,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2623 chr2 113427302 . A T 0 PASS DP=19;GPV=1;SPV=0.21053;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:7,2:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2624 chr2 113559179 . G A 0 PASS DP=93;GPV=1;SPV=0.01507;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:61:42,19:25,8:17,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2625 chr2 113584515 . C T 0 PASS DP=93;GPV=1;SPV=0.015143;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:39,11:19,3:20,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2626 chr2 113598180 . A ACCCTGG 0 PASS DP=169;GPV=1;SPV=0.03089;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:87:76,11:48,6:28,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2627 chr2 113615278 . C A 0 PASS DP=66;GPV=1;SPV=0.021983;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:24,9:5,7:19,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2628 chr2 113615483 . A G 0 PASS DP=28;GPV=1;SPV=0.11624;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:6,1:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2629 chr2 113741338 . C T 0 PASS DP=60;GPV=1;SPV=1.7634e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:15,27:3,18:12,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2630 chr2 113770215 . T A 0 PASS DP=31;GPV=1;SPV=0.014757;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:6,7:3,5:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2631 chr2 113949377 . C CA 0 PASS DP=27;GPV=1;SPV=0.014907;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,5:4,4:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2632 chr2 115693550 . C A 0 PASS DP=78;GPV=1;SPV=8.4931e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:32,18:14,8:18,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2633 chr2 116583705 . A G 0 PASS DP=60;GPV=1;SPV=0.043456;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:28,5:9,2:19,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2634 chr2 116887745 . AGTGTGTGTGT A 0 PASS DP=34;GPV=1;SPV=0.00081085;SS=2;SSC=30;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:3,10:1,4:2,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2635 chr2 117750541 . C T 0 PASS DP=35;GPV=1;SPV=0.006031;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:10,12:6,5:4,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2636 chr2 118895755 . C CTT 0 PASS DP=36;GPV=1;SPV=0.00040256;SS=2;SSC=33;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:9,11:3,6:6,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2637 chr2 119519825 . AAAG A 0 PASS DP=29;GPV=1;SPV=0.0029985;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,8:5,7:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2638 chr2 120886159 . AGTGTGTGTGT A 0 PASS DP=28;GPV=1;SPV=0.042556;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:5,4:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2639 chr2 120945957 . T TCACACACACACA 0 PASS DP=36;GPV=1;SPV=0.015561;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:9,8:7,2:2,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2640 chr2 121134596 . G GGTGT 0 PASS DP=25;GPV=1;SPV=0.045217;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:6,3:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2641 chr2 122220081 . C CA 0 PASS DP=36;GPV=1;SPV=0.012882;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:9,7:5,6:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2642 chr2 122568073 . G C 0 PASS DP=61;GPV=1;SPV=0.0014541;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:24,10:10,6:14,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2643 chr2 123494750 . C T 0 PASS DP=65;GPV=1;SPV=5.2547e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:17,26:7,14:10,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2644 chr2 124029475 . C T 0 PASS DP=61;GPV=1;SPV=0.0014541;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:24,10:12,3:12,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2645 chr2 124232827 . G A 0 PASS DP=70;GPV=1;SPV=0.00036759;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:27,12:14,7:13,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2646 chr2 124419896 . T TTTTC 0 PASS DP=43;GPV=1;SPV=0.061797;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:22,6:7,2:15,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2647 chr2 124571525 . TTC T 0 PASS DP=31;GPV=1;SPV=0.12318;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:5,2:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2648 chr2 124956034 . G T 0 PASS DP=69;GPV=1;SPV=0.003619;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:28,8:11,3:17,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2649 chr2 125739694 . T TC 0 PASS DP=46;GPV=1;SPV=0.036268;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:20,11:10,2:10,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2650 chr2 126737262 . T TGATA 0 PASS DP=52;GPV=1;SPV=0.039955;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,7:5,3:11,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2651 chr2 127787999 . T G 0 PASS DP=16;GPV=1;SPV=0.1;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:5,3:2,2:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2652 chr2 127788000 . T C 0 PASS DP=16;GPV=1;SPV=0.038462;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:1,3:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2653 chr2 128221306 . G T 0 PASS DP=75;GPV=1;SPV=0.00021386;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:28,12:19,9:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2654 chr2 130129973 . G C 0 PASS DP=21;GPV=1;SPV=0.022704;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,5:4,1:2,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2655 chr2 130216099 . T C 0 PASS DP=50;GPV=1;SPV=0.046334;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:25,6:17,5:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2656 chr2 130762170 . G T 0 PASS DP=81;GPV=1;SPV=0.025682;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:35,5:15,4:20,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2657 chr2 131023074 . C A 0 PASS DP=32;GPV=1;SPV=0.32312;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,4:14,1:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2658 chr2 131223219 . G T 0 PASS DP=42;GPV=1;SPV=0.077327;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:13,3:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2659 chr2 131455425 . C CTT 0 PASS DP=28;GPV=1;SPV=0.18814;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,4:6,2:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2660 chr2 131688504 . CT C 0 PASS DP=63;GPV=1;SPV=0.0052563;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:28,9:16,8:12,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2661 chr2 131765473 . AGTCCCCAGGTTGATACCTG A 0 PASS DP=42;GPV=1;SPV=0.079112;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:7,1:12,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2662 chr2 131912638 . A G 0 PASS DP=76;GPV=1;SPV=0.017466;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:31,8:18,7:13,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2663 chr2 132029651 . A ACACAC 0 PASS DP=53;GPV=1;SPV=0.033527;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,10:14,5:6,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2664 chr2 132048452 . C A 0 PASS DP=47;GPV=1;SPV=0.28797;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:14,4:3,1:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2665 chr2 132049441 . G A 0 PASS DP=117;GPV=1;SPV=0.017552;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:72:64,8:36,7:28,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2666 chr2 132258640 . A G 0 PASS DP=66;GPV=1;SPV=0.00017421;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:24,13:12,3:12,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2667 chr2 132264069 . A ATAAATAAATAAATAAATAAATAAAT 0 PASS DP=38;GPV=1;SPV=0.2164;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,4:10,2:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2668 chr2 133567659 . G C 0 PASS DP=64;GPV=1;SPV=0.1016;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:17,4:9,2:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2669 chr2 133729208 . G A 0 PASS DP=83;GPV=1;SPV=0.00036473;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:35,13:16,6:19,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2670 chr2 133948596 . G T 0 PASS DP=65;GPV=1;SPV=0.0048347;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:25,7:15,2:10,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2671 chr2 134372186 . C A 0 PASS DP=51;GPV=1;SPV=0.016436;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,6:12,2:9,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2672 chr2 134759427 . A G 0 PASS DP=36;GPV=1;SPV=0.043327;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,10:7,7:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2673 chr2 135881598 . T C 0 PASS DP=66;GPV=1;SPV=0.001019;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:22,8:9,2:13,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2674 chr2 137699040 . G C 0 PASS DP=58;GPV=1;SPV=0.0048714;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:26,10:12,5:14,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2675 chr2 138449450 . T C 0 PASS DP=65;GPV=1;SPV=0.29167;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:4,3:4,1:0,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2676 chr2 139062024 . T C 0 PASS DP=52;GPV=1;SPV=0.087731;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:16,2:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2677 chr2 139277983 . C A 0 PASS DP=80;GPV=1;SPV=0.00023167;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:32,13:14,3:18,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2678 chr2 140107109 . T A 0 PASS DP=57;GPV=1;SPV=0.016569;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:27,8:10,4:17,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2679 chr2 140600767 . GT G 0 PASS DP=24;GPV=1;SPV=0.098383;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,5:5,4:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2680 chr2 142478952 . G GT 0 PASS DP=29;GPV=1;SPV=0.024017;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:8,11:2,8:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2681 chr2 142572908 . A AATG 0 PASS DP=42;GPV=1;SPV=0.021449;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:7,12:3,8:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2682 chr2 142824679 . A G 0 PASS DP=55;GPV=1;SPV=0.0055971;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:26,13:14,9:12,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2683 chr2 143318509 . CTTTTTT C 0 PASS DP=19;GPV=1;SPV=0.03989;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,6:2,4:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2684 chr2 143823230 . A T 0 PASS DP=47;GPV=1;SPV=0.01412;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:20,7:9,6:11,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2685 chr2 144636481 . C CT 0 PASS DP=31;GPV=1;SPV=0.097251;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:13,4:1,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2686 chr2 145609330 . C CT 0 PASS DP=22;GPV=1;SPV=0.12238;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:4,6:3,5:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2687 chr2 146056035 . GAAA G 0 PASS DP=36;GPV=1;SPV=0.041126;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:12,4:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2688 chr2 146056082 . AAAG A 0 PASS DP=47;GPV=1;SPV=0.033555;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:10,3:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2689 chr2 147049309 . A G 0 PASS DP=66;GPV=1;SPV=0.00054466;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,9:14,5:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2690 chr2 147105609 . G C 0 PASS DP=47;GPV=1;SPV=0.013649;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:21,8:14,4:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2691 chr2 147820226 . CAAAAA C 0 PASS DP=50;GPV=1;SPV=0.016596;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,10:9,8:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2692 chr2 148647619 . CT C 0 PASS DP=19;GPV=1;SPV=0.041176;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,4:1,3:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2693 chr2 149435613 . T A 0 PASS DP=85;GPV=1;SPV=2.8454e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:31,15:13,10:18,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2694 chr2 149965864 . C A 0 PASS DP=70;GPV=1;SPV=0.0061653;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:35,11:20,5:15,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2695 chr2 150025327 . AAT A 0 PASS DP=39;GPV=1;SPV=0.0039984;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,10:5,5:6,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2696 chr2 150249947 . G A 0 PASS DP=54;GPV=1;SPV=0.12905;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:17,4:9,3:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2697 chr2 150636654 . T G 0 PASS DP=69;GPV=1;SPV=0.044663;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:33,5:17,2:16,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2698 chr2 150930638 . A T 0 PASS DP=31;GPV=1;SPV=0.071429;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:16:1,3:1,2:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2699 chr2 151005494 . A G 0 PASS DP=64;GPV=1;SPV=0.11618;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:34,4:21,2:13,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2700 chr2 151132476 . A AAGGGAGAG 0 PASS DP=54;GPV=1;SPV=0.11921;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:31,5:11,3:20,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2701 chr2 152915501 . T TACACAC 0 PASS DP=36;GPV=1;SPV=0.046816;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,8:10,3:2,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2702 chr2 153074663 . G C 0 PASS DP=48;GPV=1;SPV=0.00014841;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:12,19:3,12:9,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2703 chr2 154299455 . C CT 0 PASS DP=34;GPV=1;SPV=0.013278;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:10,10:6,8:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2704 chr2 154862380 . G C 0 PASS DP=63;GPV=1;SPV=0.054281;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:19,6:9,4:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2705 chr2 155334085 . A G 0 PASS DP=44;GPV=1;SPV=0.11013;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:14,3:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2706 chr2 158895384 . C CT 0 PASS DP=27;GPV=1;SPV=0.004257;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:4,9:1,8:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2707 chr2 159025189 . T TTTTCTTTCTTTC 0 PASS DP=45;GPV=1;SPV=0.082213;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:11,5:3,1:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2708 chr2 159075417 . A C 0 PASS DP=43;GPV=1;SPV=0.22222;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:3,2:2,1:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2709 chr2 159802428 . ATT A 0 PASS DP=24;GPV=1;SPV=0.038921;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,5:4,2:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2710 chr2 160410221 . CAA C 0 PASS DP=35;GPV=1;SPV=0.064336;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,7:6,6:11,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2711 chr2 162748939 . C CCT 0 PASS DP=17;GPV=1;SPV=0.23077;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:5,2:2,1:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2712 chr2 163525725 . ATT A 0 PASS DP=32;GPV=1;SPV=0.11947;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:9,8:6,5:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2713 chr2 165057743 . T A 0 PASS DP=71;GPV=1;SPV=0.0015308;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:23,7:14,2:9,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2714 chr2 166684335 . G C 0 PASS DP=43;GPV=1;SPV=0.073359;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,4:7,1:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2715 chr2 168788810 . A T 0 PASS DP=65;GPV=1;SPV=0.02438;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:27,5:14,3:13,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2716 chr2 169522705 . ATTTTT A 0 PASS DP=24;GPV=1;SPV=0.2066;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,4:6,3:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2717 chr2 170794023 . C A 0 PASS DP=49;GPV=1;SPV=0.062277;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:24,5:9,1:15,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2718 chr2 171015415 . AACACAC A 0 PASS DP=48;GPV=1;SPV=0.0071032;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:7,10:4,4:3,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2719 chr2 171194818 . GGGA G 0 PASS DP=32;GPV=1;SPV=0.015238;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:9,9:6,8:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2720 chr2 171234442 . T A 0 PASS DP=42;GPV=1;SPV=0.24176;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:7,4:6,2:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2721 chr2 171257157 . T A 0 PASS DP=35;GPV=1;SPV=0.2419;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,4:3,3:11,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2722 chr2 171293140 . GA G 0 PASS DP=42;GPV=1;SPV=0.012052;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:15,11:9,2:6,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2723 chr2 171902833 . A G 0 PASS DP=42;GPV=1;SPV=0.077327;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:12,2:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2724 chr2 172190374 . A G 0 PASS DP=34;GPV=1;SPV=0.07313;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,5:8,1:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2725 chr2 172441559 . T TA 0 PASS DP=24;GPV=1;SPV=0.17128;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:6,3:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2726 chr2 172622551 . C CTCATATATT 0 PASS DP=72;GPV=1;SPV=0.072031;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:33,4:17,2:16,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2727 chr2 172622558 . GAT G 0 PASS DP=74;GPV=1;SPV=0.021294;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:37,7:19,3:18,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2728 chr2 173815234 . GA G 0 PASS DP=35;GPV=1;SPV=0.16912;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:15,3:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2729 chr2 174720839 . T TAAAAA 0 PASS DP=55;GPV=1;SPV=0.033516;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:23,9:14,8:9,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2730 chr2 178032621 . G T 0 PASS DP=72;GPV=1;SPV=0.0037034;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:36,13:26,7:10,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2731 chr2 178127994 . C CT 0 PASS DP=28;GPV=1;SPV=0.062963;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:5,2:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2732 chr2 178157505 . G C 0 PASS DP=82;GPV=1;SPV=1.2492e-05;SS=2;SSC=49;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:30,18:15,5:15,13
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2733 chr2 178432094 . G A 0 PASS DP=84;GPV=1;SPV=0.0075752;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:28,14:18,4:10,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2734 chr2 178718105 . G T 0 PASS DP=67;GPV=1;SPV=1.012e-06;SS=2;SSC=59;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:19,21:10,9:9,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2735 chr2 179015093 . T C 0 PASS DP=20;GPV=1;SPV=0.029799;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,5:3,3:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2736 chr2 179040693 . G A 0 PASS DP=52;GPV=1;SPV=0.023047;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:23,13:5,6:18,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2737 chr2 183969689 . T C 0 PASS DP=26;GPV=1;SPV=0.049428;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:8,10:2,3:6,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2738 chr2 184213722 . A G 0 PASS DP=26;GPV=1;SPV=0.029565;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:9,6:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2739 chr2 184587718 . AAG A 0 PASS DP=32;GPV=1;SPV=0.046518;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:5,6:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2740 chr2 184912624 . TC T 0 PASS DP=75;GPV=1;SPV=0.0001497;SS=2;SSC=38;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:27,12:19,5:8,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2741 chr2 188066338 . C CAA 0 PASS DP=38;GPV=1;SPV=0.18281;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:18,6:9,5:9,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2742 chr2 188368923 . G A 0 PASS DP=27;GPV=1;SPV=0.1592;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:6,3:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2743 chr2 189059585 . GT G 0 PASS DP=26;GPV=1;SPV=0.047826;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:6,1:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2744 chr2 190314359 . GTA G 0 PASS DP=32;GPV=1;SPV=0.11785;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,6:10,2:3,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2745 chr2 190737761 . T C 0 PASS DP=28;GPV=1;SPV=0.15;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:6,3:6,2:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2746 chr2 191120145 . T A 0 PASS DP=61;GPV=1;SPV=0.00030992;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:24,16:10,8:14,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2747 chr2 191120753 . ACAC A 0 PASS DP=79;GPV=1;SPV=0.010002;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:38,8:21,4:17,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2748 chr2 191120759 . TATATAAA T 0 PASS DP=76;GPV=1;SPV=0.0085279;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:33,7:18,3:15,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2749 chr2 191383549 . T C 0 PASS DP=27;GPV=1;SPV=0.017028;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,6:3,4:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2750 chr2 192421667 . A T 0 PASS DP=66;GPV=1;SPV=0.0002648;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:25,13:10,5:15,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2751 chr2 192981193 . A G 0 PASS DP=43;GPV=1;SPV=0.029349;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:12,8:2,6:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2752 chr2 194048427 . G GCATGTATACACATATATGTATATA 0 PASS DP=30;GPV=1;SPV=0.16319;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,4:5,3:10,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2753 chr2 194916085 . G A 0 PASS DP=32;GPV=1;SPV=0.0088413;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:4,6:2,4:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2754 chr2 196927409 . TA T 0 PASS DP=30;GPV=1;SPV=0.11166;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:6,2:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2755 chr2 197763472 . T C 0 PASS DP=43;GPV=1;SPV=0.0089009;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,5:6,3:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2756 chr2 197864800 . T G 0 PASS DP=65;GPV=1;SPV=6.2242e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:22,14:8,7:14,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2757 chr2 198954354 . G T 0 PASS DP=61;GPV=1;SPV=2.7571e-07;SS=2;SSC=65;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:14,19:10,10:4,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2758 chr2 201917376 . GCA G 0 PASS DP=42;GPV=1;SPV=0.0066141;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:3,12:3,7:0,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2759 chr2 202338609 . TC T 0 PASS DP=39;GPV=1;SPV=0.19231;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:4,2:3,1:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2760 chr2 202691649 . TTGTGTGTG T 0 PASS DP=42;GPV=1;SPV=0.015535;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:8,11:5,9:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2761 chr2 202766061 . AAC A 0 PASS DP=56;GPV=1;SPV=0.018293;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,8:12,6:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2762 chr2 203209412 . G C 0 PASS DP=57;GPV=1;SPV=0.069378;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:11,3:15,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2763 chr2 203354515 . C T 0 PASS DP=81;GPV=1;SPV=3.2001e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:32,19:19,7:13,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2764 chr2 206163937 . T A 0 PASS DP=35;GPV=1;SPV=0.27273;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:4,2:2,1:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2765 chr2 206386681 . CA C 0 PASS DP=54;GPV=1;SPV=0.045061;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,5:22,3:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2766 chr2 206479508 . G C 0 PASS DP=69;GPV=1;SPV=0.00060836;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:30,15:12,9:18,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2767 chr2 206596899 . CTTT C 0 PASS DP=28;GPV=1;SPV=0.004257;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:4,7:2,6:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2768 chr2 206793248 . A C 0 PASS DP=36;GPV=1;SPV=0.091388;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,6:6,4:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2769 chr2 207521122 . AT A 0 PASS DP=73;GPV=1;SPV=0.0018044;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:31,10:17,3:14,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2770 chr2 207521134 . C A 0 PASS DP=65;GPV=1;SPV=0.0062626;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:31,10:18,3:13,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2771 chr2 207657123 . ACCTCGTGATTGAGGCCTCGGCCTC A 0 PASS DP=76;GPV=1;SPV=0.0020087;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:33,10:15,2:18,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2772 chr2 207688933 . T A 0 PASS DP=61;GPV=1;SPV=0.0003086;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:21,11:9,4:12,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2773 chr2 208559894 . TTTTTC T 0 PASS DP=65;GPV=1;SPV=0.0309;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:29,15:17,4:12,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2774 chr2 208571470 . G A 0 PASS DP=66;GPV=1;SPV=0.00079602;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:26,11:12,8:14,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2775 chr2 209247765 . G C 0 PASS DP=39;GPV=1;SPV=0.012812;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:17,11:10,6:7,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2776 chr2 209312880 . CA C 0 PASS DP=33;GPV=1;SPV=0.17876;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:13,3:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2777 chr2 209819145 . GCTAAC G 0 PASS DP=56;GPV=1;SPV=0.00023693;SS=2;SSC=36;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,10:8,5:9,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2778 chr2 211110158 . C CA 0 PASS DP=49;GPV=1;SPV=0.036268;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:20,11:14,8:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2779 chr2 211165683 . CGTGTGTGTGT C 0 PASS DP=31;GPV=1;SPV=0.017848;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:8,8:3,7:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2780 chr2 211296874 . T TATAC 0 PASS DP=58;GPV=1;SPV=0.0027957;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:11,8:3,2:8,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2781 chr2 211414506 . A T 0 PASS DP=36;GPV=1;SPV=0.11429;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:19:1,3:0,2:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2782 chr2 211944181 . A ATATAC 0 PASS DP=43;GPV=1;SPV=0.0013343;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:11,11:6,7:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2783 chr2 212519717 . T C 0 PASS DP=73;GPV=1;SPV=7.9047e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:28,16:17,5:11,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2784 chr2 212864431 . T A 0 PASS DP=52;GPV=1;SPV=0.10815;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:30,6:12,1:18,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2785 chr2 212897252 . C T 0 PASS DP=60;GPV=1;SPV=0.079813;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:32,5:14,3:18,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2786 chr2 212964856 . A ATGTC 0 PASS DP=41;GPV=1;SPV=0.32176;SS=2;SSC=4;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,4:9,2:16,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2787 chr2 213648658 . T C 0 PASS DP=66;GPV=1;SPV=0.00017084;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:18,16:9,10:9,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2788 chr2 215184107 . C T 0 PASS DP=71;GPV=1;SPV=1.6913e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:23,15:17,10:6,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2789 chr2 215943838 . C CA 0 PASS DP=27;GPV=1;SPV=0.12913;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,5:4,4:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2790 chr2 216263435 . AAGAG A 0 PASS DP=48;GPV=1;SPV=0.020223;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,11:12,6:4,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2791 chr2 217198931 . A T 0 PASS DP=34;GPV=1;SPV=0.035372;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,6:5,3:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2792 chr2 217198932 . A C 0 PASS DP=23;GPV=1;SPV=0.018182;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:1,8:0,3:1,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2793 chr2 217198934 . C A 0 PASS DP=32;GPV=1;SPV=0.041026;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,4:2,3:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2794 chr2 217410516 . G GTGTGTGTGTGTGTGTGTGTGTGTA 0 PASS DP=47;GPV=1;SPV=0.063158;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:6,12:3,4:3,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2795 chr2 218359341 . CA C 0 PASS DP=41;GPV=1;SPV=0.027524;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,8:10,7:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2796 chr2 218433443 . GA G 0 PASS DP=52;GPV=1;SPV=0.0057036;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:21,8:15,4:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2797 chr2 218434197 . C CA 0 PASS DP=58;GPV=1;SPV=0.0034107;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:18,17:9,13:9,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2798 chr2 220867018 . A AAAG 0 PASS DP=48;GPV=1;SPV=0.032462;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:20,10:13,6:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2799 chr2 222116486 . G GA 0 PASS DP=43;GPV=1;SPV=0.02905;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,6:14,5:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2800 chr2 222116495 . GA G 0 PASS DP=38;GPV=1;SPV=0.036566;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,6:13,5:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2801 chr2 222571217 . A T 0 PASS DP=62;GPV=1;SPV=0.00011169;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:21,13:13,7:8,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2802 chr2 224254054 . GAC G 0 PASS DP=46;GPV=1;SPV=0.034789;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,5:10,2:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2803 chr2 224695697 . A G 0 PASS DP=59;GPV=1;SPV=0.15766;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:18,3:10,2:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2804 chr2 224820211 . C T 0 PASS DP=64;GPV=1;SPV=0.0034183;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:27,9:14,4:13,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2805 chr2 226097503 . G A 0 PASS DP=57;GPV=1;SPV=0.012731;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:25,7:16,2:9,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2806 chr2 226566406 . C G 0 PASS DP=68;GPV=1;SPV=0.0050608;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:32,10:18,4:14,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2807 chr2 227104638 . C CT 0 PASS DP=26;GPV=1;SPV=0.0087495;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:7,9:3,6:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2808 chr2 227441286 . CA C 0 PASS DP=65;GPV=1;SPV=0.13148;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:39,5:20,2:19,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2809 chr2 228425351 . C G 0 PASS DP=41;GPV=1;SPV=0.026907;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:8,2:4,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2810 chr2 228496261 . GAA G 0 PASS DP=28;GPV=1;SPV=0.057143;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:2,2:2,1:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2811 chr2 229092038 . C A 0 PASS DP=41;GPV=1;SPV=0.087777;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:11,4:10,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2812 chr2 229512734 . T G 0 PASS DP=85;GPV=1;SPV=0.00030064;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:33,17:15,6:18,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2813 chr2 230089325 . A AT 0 PASS DP=27;GPV=1;SPV=0.11538;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:6,6:3,2:3,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2814 chr2 231521977 . T C 0 PASS DP=34;GPV=1;SPV=0.10447;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:8,1:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2815 chr2 232763831 . C CA 0 PASS DP=61;GPV=1;SPV=0.0016269;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:20,17:10,6:10,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2816 chr2 232847517 . A G 0 PASS DP=62;GPV=1;SPV=0.037397;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:13,7:6,5:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2817 chr2 233768582 . CT C 0 PASS DP=31;GPV=1;SPV=0.034533;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,5:2,3:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2818 chr2 234510916 . CT C 0 PASS DP=35;GPV=1;SPV=0.024499;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:6,8:2,7:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2819 chr2 236630911 . CTTTTTTTTTTT C 0 PASS DP=21;GPV=1;SPV=0.00022114;SS=2;SSC=36;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:10:2,8:1,7:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2820 chr2 236645120 . C CTTT 0 PASS DP=35;GPV=1;SPV=0.067367;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,6:11,5:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2821 chr2 237516830 . AGGAT A 0 PASS DP=42;GPV=1;SPV=0.02457;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:16,12:5,5:11,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2822 chr2 237629467 . CT C 0 PASS DP=26;GPV=1;SPV=0.023045;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,9:3,7:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2823 chr2 237974514 . TG T 0 PASS DP=33;GPV=1;SPV=0.0779;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:13,5:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2824 chr2 238837721 . C CTT 0 PASS DP=31;GPV=1;SPV=0.01093;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:6,10:5,6:1,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2825 chr2 239008853 . G C 0 PASS DP=65;GPV=1;SPV=0.00067124;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:25,11:15,7:10,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2826 chr2 239802883 . C CA 0 PASS DP=53;GPV=1;SPV=0.028662;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:19,10:14,8:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2827 chr2 240308864 . GTGTGTCTC G 0 PASS DP=62;GPV=1;SPV=0.031685;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:30,6:12,3:18,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2828 chr2 242043203 . T TA 0 PASS DP=66;GPV=1;SPV=0.11412;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:14,1:21,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2829 chr2 242183177 . G T 0 PASS DP=49;GPV=1;SPV=0.19313;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:18,1:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2830 chr20 161991 . G C 0 PASS DP=38;GPV=1;SPV=0.017846;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,10:8,8:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2831 chr20 743121 . GTC G 0 PASS DP=46;GPV=1;SPV=0.031702;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,7:7,4:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2832 chr20 1248045 . C CA 0 PASS DP=24;GPV=1;SPV=0.029515;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,7:4,6:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2833 chr20 1766142 . C T 0 PASS DP=33;GPV=1;SPV=0.24377;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:18,3:5,1:13,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2834 chr20 1766165 . ATACATATATGTG A 0 PASS DP=32;GPV=1;SPV=0.29565;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,3:2,1:12,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2835 chr20 1900328 . G A 0 PASS DP=76;GPV=1;SPV=2.9081e-06;SS=2;SSC=55;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:25,20:13,8:12,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2836 chr20 2892289 . CA C 0 PASS DP=34;GPV=1;SPV=0.041917;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,9:7,7:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2837 chr20 3062830 . C CAA 0 PASS DP=22;GPV=1;SPV=0.24176;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,4:3,3:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2838 chr20 3090966 . A ATT 0 PASS DP=21;GPV=1;SPV=0.041958;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:4,5:3,2:1,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2839 chr20 3829618 . ACATGACGTAGAGTATCTTTCCTATGCTTACTTGCC A 0 PASS DP=53;GPV=1;SPV=0.069922;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:11,2:13,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2840 chr20 3885499 . G A 0 PASS DP=72;GPV=1;SPV=5.4315e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:23,12:9,6:14,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2841 chr20 4055295 . C T 0 PASS DP=25;GPV=1;SPV=0.0024499;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,10:3,6:3,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2842 chr20 4085893 . C CT 0 PASS DP=46;GPV=1;SPV=0.029887;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:19,13:6,10:13,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2843 chr20 4231267 . G GTTATTATTATTATTA 0 PASS DP=39;GPV=1;SPV=0.046407;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:7,6:4,3:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2844 chr20 4550398 . CTCTT C 0 PASS DP=30;GPV=1;SPV=0.031702;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:2,6:0,3:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2845 chr20 5434642 . A T 0 PASS DP=75;GPV=1;SPV=0.00069104;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:34,15:13,9:21,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2846 chr20 5501509 . T C 0 PASS DP=35;GPV=1;SPV=0.24868;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:11,2:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2847 chr20 5713917 . T C 0 PASS DP=22;GPV=1;SPV=0.14286;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:1,2:1,1:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2848 chr20 5985441 . CA C 0 PASS DP=27;GPV=1;SPV=0.021449;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,7:2,5:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2849 chr20 6240633 . C CTT 0 PASS DP=38;GPV=1;SPV=0.08112;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,5:7,1:10,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2850 chr20 7961816 . CT C 0 PASS DP=39;GPV=1;SPV=0.0096036;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:13,13:11,9:2,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2851 chr20 8031836 . GT G 0 PASS DP=71;GPV=1;SPV=0.043742;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:31,7:13,2:18,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2852 chr20 8114313 . T C 0 PASS DP=39;GPV=1;SPV=0.057736;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:20,7:4,3:16,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2853 chr20 8229883 . TA T 0 PASS DP=42;GPV=1;SPV=0.077327;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:12,3:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2854 chr20 8906183 . C G 0 PASS DP=87;GPV=1;SPV=0.00012114;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:36,15:20,6:16,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2855 chr20 9799939 . C CA 0 PASS DP=28;GPV=1;SPV=0.20468;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,4:11,3:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2856 chr20 9991653 . G T 0 PASS DP=73;GPV=1;SPV=0.0026219;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:26,7:14,5:12,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2857 chr20 10438472 . GT G 0 PASS DP=31;GPV=1;SPV=0.03685;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,6:7,5:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2858 chr20 12322747 . C CT 0 PASS DP=36;GPV=1;SPV=0.036146;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:13,11:9,9:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2859 chr20 12757177 . A G 0 PASS DP=80;GPV=1;SPV=0.050822;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:40,5:25,4:15,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2860 chr20 13129774 . G C 0 PASS DP=74;GPV=1;SPV=5.4096e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:27,15:12,8:15,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2861 chr20 13588250 . A G 0 PASS DP=36;GPV=1;SPV=0.042986;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:3,8:3,7:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2862 chr20 13592397 . C CAA 0 PASS DP=53;GPV=1;SPV=0.013406;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,9:9,7:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2863 chr20 14119159 . A AT 0 PASS DP=29;GPV=1;SPV=0.022704;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,5:4,2:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2864 chr20 14215115 . C CAT 0 PASS DP=54;GPV=1;SPV=0.18206;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:34,5:16,1:18,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2865 chr20 14857810 . G GTTTGTTTTGTTTTGT 0 PASS DP=60;GPV=1;SPV=0.031683;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:23,10:10,7:13,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2866 chr20 15378182 . C CATA 0 PASS DP=48;GPV=1;SPV=0.00076814;SS=2;SSC=31;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:14,19:7,10:7,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2867 chr20 17137901 . T C 0 PASS DP=58;GPV=1;SPV=2.6145e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:17,14:9,7:8,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2868 chr20 17769643 . C A 0 PASS DP=69;GPV=1;SPV=0.00090273;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:31,15:18,4:13,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2869 chr20 18486115 . A AAT 0 PASS DP=21;GPV=1;SPV=0.031623;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,6:1,4:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2870 chr20 20175489 . TTTTTGTTTTGTTTTGTTTTGTTTTGTTTTG T 0 PASS DP=41;GPV=1;SPV=0.10493;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:7,1:13,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2871 chr20 20356494 . A C 0 PASS DP=60;GPV=1;SPV=0.032848;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:11,2:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2872 chr20 22083501 . GTATATTAATATAGACGTATATATAATATATACA G 0 PASS DP=48;GPV=1;SPV=0.047147;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:12,2:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2873 chr20 22958183 . T C 0 PASS DP=65;GPV=1;SPV=3.5037e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:19,12:12,4:7,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2874 chr20 24408123 . C T 0 PASS DP=32;GPV=1;SPV=2.7406e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:20:5,15:1,3:4,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2875 chr20 26242394 . G C 0 PASS DP=73;GPV=1;SPV=6.4318e-06;SS=2;SSC=51;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:24,18:16,14:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2876 chr20 26470782 . A C 0 PASS DP=38;GPV=1;SPV=0.099099;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:0,0:18,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2877 chr20 26479354 . T C 0 PASS DP=36;GPV=1;SPV=0.15033;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:19,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2878 chr20 26489709 . A G 0 PASS DP=220;GPV=1;SPV=0.0021765;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:126:112,14:67,11:45,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2879 chr20 26509415 . G T 0 PASS DP=142;GPV=1;SPV=0.048817;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:81:71,10:35,1:36,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2880 chr20 26579202 . G C 0 PASS DP=23;GPV=1;SPV=0.10217;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,4:1,3:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2881 chr20 26755353 . C G 0 PASS DP=43;GPV=1;SPV=0.29609;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:26,3:17,1:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2882 chr20 28117242 . G C 0 PASS DP=39;GPV=1;SPV=0.21337;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:13,3:10,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2883 chr20 28513947 . A G 0 PASS DP=92;GPV=1;SPV=0.037241;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:48,10:8,1:40,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2884 chr20 28514447 . A G 0 PASS DP=21;GPV=1;SPV=0.015905;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:4,8:2,7:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2885 chr20 28515137 . G C 0 PASS DP=96;GPV=1;SPV=0.017025;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:48,7:45,5:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2886 chr20 28515216 . T A 0 PASS DP=71;GPV=1;SPV=0.022781;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:33,6:17,3:16,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2887 chr20 28524338 . A C 0 PASS DP=63;GPV=1;SPV=0.093615;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:35,5:11,2:24,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2888 chr20 28531086 . T A 0 PASS DP=84;GPV=1;SPV=0.06863;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:45,5:19,4:26,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2889 chr20 28547028 . A G 0 PASS DP=133;GPV=1;SPV=0.026138;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:82:64,18:57,17:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2890 chr20 28557603 . T G 0 PASS DP=217;GPV=1;SPV=0.029213;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:126:108,18:63,9:45,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2891 chr20 28565778 . A G 0 PASS DP=369;GPV=1;SPV=0.0096569;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:197:177,20:40,6:137,14
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2892 chr20 28616398 . A C 0 PASS DP=162;GPV=1;SPV=0.011508;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:98:74,24:25,13:49,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2893 chr20 28645739 . A C 0 PASS DP=32;GPV=1;SPV=0.21107;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:14,1:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2894 chr20 28811966 . G A 0 PASS DP=182;GPV=1;SPV=0.0016571;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:108:80,28:40,15:40,13
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2895 chr20 28910155 . A G 0 PASS DP=252;GPV=1;SPV=0.044953;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:148:125,23:57,13:68,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2896 chr20 28910215 . T G 0 PASS DP=279;GPV=1;SPV=0.0014333;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:164:131,33:57,20:74,13
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2897 chr20 28948565 . G T 0 PASS DP=25;GPV=1;SPV=0.082213;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,5:7,3:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2898 chr20 29061215 . T G 0 PASS DP=175;GPV=1;SPV=0.0019957;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:94:79,15:29,9:50,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2899 chr20 29072865 . C G 0 PASS DP=343;GPV=1;SPV=0.0075268;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:182:155,27:96,14:59,13
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2900 chr20 29073075 . TA T 0 PASS DP=282;GPV=1;SPV=0.0353;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:133:111,22:38,4:73,18
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2901 chr20 29113396 . A T 0 PASS DP=205;GPV=1;SPV=0.038983;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:102:89,13:47,10:42,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2902 chr20 29295714 . T C 0 PASS DP=146;GPV=1;SPV=0.024476;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:72:57,15:29,9:28,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2903 chr20 29295725 . T G 0 PASS DP=147;GPV=1;SPV=0.0027823;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:79:62,12:35,7:27,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2904 chr20 29350739 . CT C 0 PASS DP=31;GPV=1;SPV=0.0056194;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:6,5:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2905 chr20 29449141 . CCTGGCTCGGCCAG C 0 PASS DP=148;GPV=1;SPV=0.02667;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:87:75,12:50,5:25,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2906 chr20 29451370 . A C 0 PASS DP=46;GPV=1;SPV=0.12547;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:0,0:24,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2907 chr20 29484242 . A C 0 PASS DP=165;GPV=1;SPV=0.0086347;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:100:82,18:35,11:47,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2908 chr20 29587475 . C CAAAAAAAAAAAA 0 PASS DP=35;GPV=1;SPV=0.092532;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:14,3:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2909 chr20 29731270 . GA G 0 PASS DP=102;GPV=1;SPV=0.0036541;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:68:51,17:27,5:24,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2910 chr20 29828270 . C T 0 PASS DP=182;GPV=1;SPV=0.0080158;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:103:87,16:45,9:42,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2911 chr20 29882271 . C T 0 PASS DP=523;GPV=1;SPV=0.006049;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:283:238,45:94,14:144,31
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2912 chr20 29923169 . A T 0 PASS DP=94;GPV=1;SPV=0.044127;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:46,8:31,1:15,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2913 chr20 29938133 . G C 0 PASS DP=111;GPV=1;SPV=0.011373;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:67:48,19:39,16:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2914 chr20 29942344 . A G 0 PASS DP=25;GPV=1;SPV=0.10791;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:1,0:10,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2915 chr20 29956057 . G T 0 PASS DP=125;GPV=1;SPV=0.018085;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:69:52,17:45,9:7,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2916 chr20 29957830 . T G 0 PASS DP=42;GPV=1;SPV=0.043618;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,7:11,4:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2917 chr20 29977144 . A T 0 PASS DP=36;GPV=1;SPV=0.29794;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:3,3:20,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2918 chr20 29998621 . T A 0 PASS DP=33;GPV=1;SPV=0.091143;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,6:6,1:11,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2919 chr20 29999359 . C T 0 PASS DP=42;GPV=1;SPV=0.31829;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:26,3:2,2:24,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2920 chr20 30010022 . G A 0 PASS DP=62;GPV=1;SPV=0.10559;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:26,1:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2921 chr20 30362776 . C T 0 PASS DP=232;GPV=1;SPV=0.045463;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:120:108,12:60,8:48,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2922 chr20 30392740 . G A 0 PASS DP=124;GPV=1;SPV=0.014505;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:79:70,9:35,8:35,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2923 chr20 30693968 . G A 0 PASS DP=200;GPV=1;SPV=0.048604;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:108:92,16:35,8:57,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2924 chr20 30727081 . T C 0 PASS DP=59;GPV=1;SPV=0.1019;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:13,3:17,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2925 chr20 30730187 . CA C 0 PASS DP=24;GPV=1;SPV=0.083916;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:5,5:4,3:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2926 chr20 30907965 . ATTCT A 0 PASS DP=37;GPV=1;SPV=0.062154;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:15,8:3,6:12,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2927 chr20 30986105 . T A 0 PASS DP=43;GPV=1;SPV=0.14221;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:13,1:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2928 chr20 30986106 . T C 0 PASS DP=46;GPV=1;SPV=0.14555;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:12,1:13,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2929 chr20 31069965 . A C 0 PASS DP=147;GPV=1;SPV=0.049481;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:76:60,16:31,9:29,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2930 chr20 31072670 . G A 0 PASS DP=256;GPV=1;SPV=0.015365;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:146:123,23:90,14:33,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2931 chr20 31072734 . G T 0 PASS DP=411;GPV=1;SPV=0.0096234;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:236:211,25:155,13:56,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2932 chr20 31106036 . T A 0 PASS DP=37;GPV=1;SPV=0.042146;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,4:6,2:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2933 chr20 31325557 . G GA 0 PASS DP=45;GPV=1;SPV=0.0053975;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:15,14:7,7:8,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2934 chr20 31364188 . C CAA 0 PASS DP=41;GPV=1;SPV=0.016795;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,7:6,5:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2935 chr20 32176627 . T C 0 PASS DP=20;GPV=1;SPV=0.073684;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:6,3:4,1:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2936 chr20 32470214 . A C 0 PASS DP=91;GPV=1;SPV=3.5095e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:38,19:26,11:12,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2937 chr20 32835364 . G GTTTTT 0 PASS DP=29;GPV=1;SPV=0.0071396;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,7:3,6:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2938 chr20 33185671 . T G 0 PASS DP=77;GPV=1;SPV=6.5488e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:27,13:13,7:14,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2939 chr20 34053383 . ATT A 0 PASS DP=22;GPV=1;SPV=0.085139;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:2,3:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2940 chr20 36947405 . GGTGT G 0 PASS DP=22;GPV=1;SPV=0.029515;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,7:3,6:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2941 chr20 36977673 . AGAGAGG A 0 PASS DP=24;GPV=1;SPV=0.16587;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,5:7,3:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2942 chr20 36977713 . GA G 0 PASS DP=41;GPV=1;SPV=0.083787;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:22,6:11,3:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2943 chr20 37690460 . C CT 0 PASS DP=25;GPV=1;SPV=0.12846;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:8,3:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2944 chr20 38123637 . CCT C 0 PASS DP=52;GPV=1;SPV=0.011666;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:22,7:9,3:13,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2945 chr20 38653259 . G A 0 PASS DP=43;GPV=1;SPV=0.044156;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:12,2:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2946 chr20 38653297 . TG T 0 PASS DP=49;GPV=1;SPV=0.0044219;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,6:8,2:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2947 chr20 39063527 . TTTTCTTTCTTTC T 0 PASS DP=53;GPV=1;SPV=0.040008;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:16,9:5,6:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2948 chr20 39347890 . A C 0 PASS DP=72;GPV=1;SPV=3.4813e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:25,15:16,4:9,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2949 chr20 40461268 . T G 0 PASS DP=67;GPV=1;SPV=0.006186;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:27,7:21,3:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2950 chr20 43727641 . A T 0 PASS DP=47;GPV=1;SPV=0.0034395;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:6,3:11,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2951 chr20 44053540 . C CA 0 PASS DP=52;GPV=1;SPV=0.060413;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:17,5:9,4:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2952 chr20 44125113 . CA C 0 PASS DP=47;GPV=1;SPV=0.0038025;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:16,13:10,9:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2953 chr20 44134112 . TA T 0 PASS DP=26;GPV=1;SPV=0.014985;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:2,4:1,2:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2954 chr20 44162813 . C CACACAT 0 PASS DP=26;GPV=1;SPV=0.047619;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:0,5:0,2:0,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2955 chr20 45425137 . CTTTCTCTTTCTT C 0 PASS DP=32;GPV=1;SPV=0.16643;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:1,1:16,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2956 chr20 45776658 . A G 0 PASS DP=33;GPV=1;SPV=0.17876;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:9,2:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2957 chr20 45776660 . A G 0 PASS DP=29;GPV=1;SPV=0.43772;SS=2;SSC=3;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,4:7,2:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2958 chr20 46117352 . T A 0 PASS DP=67;GPV=1;SPV=0.025766;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:37,9:25,6:12,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2959 chr20 47403265 . C CT 0 PASS DP=32;GPV=1;SPV=0.049571;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:11,11:3,7:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2960 chr20 47422211 . A G 0 PASS DP=60;GPV=1;SPV=0.009828;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:12,8:6,3:6,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2961 chr20 48462068 . C CTTT 0 PASS DP=33;GPV=1;SPV=0.0098833;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:3,9:0,6:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2962 chr20 48510399 . T G 0 PASS DP=35;GPV=1;SPV=0.20294;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:5,3:15,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2963 chr20 48514872 . C A 0 PASS DP=54;GPV=1;SPV=0.014151;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,10:12,6:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2964 chr20 48867710 . A G 0 PASS DP=58;GPV=1;SPV=0.041361;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:21,11:8,7:13,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2965 chr20 49873771 . CA C 0 PASS DP=28;GPV=1;SPV=0.12771;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:8,7:6,6:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2966 chr20 50026372 . A G 0 PASS DP=58;GPV=1;SPV=0.0018932;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,9:12,5:10,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2967 chr20 51718814 . CAAAAAAA C 0 PASS DP=29;GPV=1;SPV=0.37564;SS=2;SSC=4;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,5:10,4:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2968 chr20 51970612 . C CTT 0 PASS DP=27;GPV=1;SPV=0.045652;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,5:5,4:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2969 chr20 52074568 . CT C 0 PASS DP=38;GPV=1;SPV=0.0039567;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:11,14:4,10:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2970 chr20 52424157 . A G 0 PASS DP=31;GPV=1;SPV=0.07564;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:7,3:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2971 chr20 53352777 . C CA 0 PASS DP=48;GPV=1;SPV=0.0010973;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:13,14:10,12:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2972 chr20 53501711 . CTT C 0 PASS DP=28;GPV=1;SPV=0.032647;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,8:6,6:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2973 chr20 53885610 . C CTTTTTTTTTTT 0 PASS DP=45;GPV=1;SPV=0.13122;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,5:11,4:14,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2974 chr20 54006822 . A C 0 PASS DP=58;GPV=1;SPV=0.032097;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:31,8:21,5:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2975 chr20 54162530 . T G 0 PASS DP=52;GPV=1;SPV=0.025159;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:25,7:8,2:17,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2976 chr20 54371623 . AAC A 0 PASS DP=40;GPV=1;SPV=0.064595;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:6,2:13,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2977 chr20 55052284 . C A 0 PASS DP=56;GPV=1;SPV=0.00026967;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,9:7,2:9,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2978 chr20 55734036 . G A 0 PASS DP=57;GPV=1;SPV=0.029574;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:23,12:17,9:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2979 chr20 56349267 . TG T 0 PASS DP=35;GPV=1;SPV=0.1088;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,5:9,1:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2980 chr20 56993886 . G T 0 PASS DP=66;GPV=1;SPV=0.0052686;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:28,8:9,5:19,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2981 chr20 57212079 . G A 0 PASS DP=66;GPV=1;SPV=0.006722;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:29,8:18,5:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2982 chr20 58196827 . CAG C 0 PASS DP=50;GPV=1;SPV=0.19313;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:15,3:14,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2983 chr20 58668684 . C T 0 PASS DP=42;GPV=1;SPV=0.0017568;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:12,16:5,6:7,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2984 chr20 58778312 . G A 0 PASS DP=60;GPV=1;SPV=0.022123;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:27,6:14,5:13,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2985 chr20 59221253 . TAGGGATTCGGG T 0 PASS DP=59;GPV=1;SPV=0.00030254;SS=2;SSC=35;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:20,11:10,4:10,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2986 chr20 61390651 . T C 0 PASS DP=39;GPV=1;SPV=0.088935;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:12,3:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2987 chr20 61390665 . A G 0 PASS DP=38;GPV=1;SPV=0.034438;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,8:11,6:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2988 chr20 62594852 . G A 0 PASS DP=51;GPV=1;SPV=0.17128;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,3:10,1:13,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2989 chr20 63037881 . C G 0 PASS DP=37;GPV=1;SPV=0.035545;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,8:5,3:8,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2990 chr20 63765076 . C T 0 PASS DP=53;GPV=1;SPV=0.029433;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:11,4:9,2:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2991 chr20 63774676 . C CTG 0 PASS DP=52;GPV=1;SPV=0.031923;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:7,4:10,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2992 chr21 5217576 . C A 0 PASS DP=326;GPV=1;SPV=0.026622;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:185:160,25:73,10:87,15
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2993 chr21 5224758 . AG A 0 PASS DP=333;GPV=1;SPV=0.048801;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:207:181,26:89,13:92,13
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2994 chr21 5229502 . C T 0 PASS DP=93;GPV=1;SPV=0.021774;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:51,8:30,4:21,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2995 chr21 5246466 . G A 0 PASS DP=174;GPV=1;SPV=0.025054;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:98:79,19:42,9:37,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2996 chr21 5344248 . C T 0 PASS DP=101;GPV=1;SPV=0.026837;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:60:48,12:23,7:25,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2997 chr21 5378938 . G C 0 PASS DP=160;GPV=1;SPV=0.018278;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:78:64,14:31,10:33,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2998 chr21 5383502 . G A 0 PASS DP=55;GPV=1;SPV=0.018636;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:23,10:7,3:16,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2999 chr21 5388534 . A G 0 PASS DP=51;GPV=1;SPV=0.026376;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:23,6:17,4:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3000 chr21 6365393 . C T 0 PASS DP=337;GPV=1;SPV=0.026886;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:188:162,26:84,17:78,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3001 chr21 6367895 . G T 0 PASS DP=315;GPV=1;SPV=0.039173;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:182:161,21:74,12:87,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3002 chr21 7225577 . A C 0 PASS DP=71;GPV=1;SPV=0.04501;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:36,10:12,4:24,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3003 chr21 7240755 . A G 0 PASS DP=51;GPV=1;SPV=0.095042;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:12,3:13,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3004 chr21 7277533 . G A 0 PASS DP=22;GPV=1;SPV=0.010394;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:4,9:4,8:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3005 chr21 7288695 . G A 0 PASS DP=27;GPV=1;SPV=0.13561;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:9,1:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3006 chr21 7290397 . T C 0 PASS DP=446;GPV=1;SPV=0.014532;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:276:248,28:131,14:117,14
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3007 chr21 7933408 . G A 0 PASS DP=234;GPV=1;SPV=0.039889;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:136:115,21:67,12:48,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3008 chr21 7942278 . T C 0 PASS DP=153;GPV=1;SPV=0.0096594;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:96:77,19:49,8:28,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3009 chr21 7942322 . GTTCCATTCCGTTCCATTCCA G 0 PASS DP=188;GPV=1;SPV=0.036061;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:119:85,16:40,7:45,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3010 chr21 7961874 . A G 0 PASS DP=225;GPV=1;SPV=0.029147;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:134:109,25:53,11:56,14
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3011 chr21 7963862 . G C 0 PASS DP=417;GPV=1;SPV=0.020503;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:232:207,25:123,9:84,16
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3012 chr21 8018801 . A T 0 PASS DP=64;GPV=1;SPV=0.14244;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:39,5:28,2:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3013 chr21 8032190 . T G 0 PASS DP=301;GPV=1;SPV=0.020463;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:184:165,19:124,12:41,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3014 chr21 8032601 . G T 0 PASS DP=132;GPV=1;SPV=0.0070468;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:69:50,19:13,3:37,16
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3015 chr21 8043464 . G T 0 PASS DP=239;GPV=1;SPV=0.00019823;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:133:119,14:56,9:63,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3016 chr21 8044801 . C T 0 PASS DP=165;GPV=1;SPV=0.046271;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:97:82,15:65,11:17,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3017 chr21 8530938 . G T 0 PASS DP=259;GPV=1;SPV=0.044154;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:143:121,22:64,10:57,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3018 chr21 8538822 . G A 0 PASS DP=53;GPV=1;SPV=0.069922;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:23,4:1,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3019 chr21 8577634 . A G 0 PASS DP=135;GPV=1;SPV=0.044794;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:82:66,16:25,5:41,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3020 chr21 8577643 . C A 0 PASS DP=149;GPV=1;SPV=0.045525;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:88:69,19:26,7:43,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3021 chr21 8660444 . G A 0 PASS DP=118;GPV=1;SPV=0.033238;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:68:53,15:21,4:32,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3022 chr21 8662131 . G A 0 PASS DP=58;GPV=1;SPV=0.10954;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:33,5:15,1:18,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3023 chr21 8693198 . T C 0 PASS DP=136;GPV=1;SPV=0.014501;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:81:65,16:28,3:37,13
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3024 chr21 8771343 . C G 0 PASS DP=217;GPV=1;SPV=0.0081245;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:116:91,25:42,21:49,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3025 chr21 8778910 . C A 0 PASS DP=170;GPV=1;SPV=0.014037;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:89:68,21:35,12:33,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3026 chr21 8779026 . C A 0 PASS DP=208;GPV=1;SPV=0.021125;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:116:95,21:47,11:48,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3027 chr21 8781555 . C T 0 PASS DP=283;GPV=1;SPV=0.033579;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:178:150,28:87,14:63,14
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3028 chr21 8798865 . G A 0 PASS DP=153;GPV=1;SPV=0.010757;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:86:67,19:24,8:43,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3029 chr21 8807667 . T C 0 PASS DP=566;GPV=1;SPV=0.030587;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:336:301,35:113,14:188,21
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3030 chr21 8810006 . A G 0 PASS DP=66;GPV=1;SPV=0.011245;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:26,9:18,8:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3031 chr21 8811166 . T A 0 PASS DP=31;GPV=1;SPV=0.23248;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:18,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3032 chr21 8818458 . T C 0 PASS DP=54;GPV=1;SPV=0.099494;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:4,3:23,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3033 chr21 8823307 . T G 0 PASS DP=21;GPV=1;SPV=0.037461;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,7:5,6:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3034 chr21 8836406 . C A 0 PASS DP=218;GPV=1;SPV=0.048287;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:119:101,18:49,6:52,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3035 chr21 8849019 . C T 0 PASS DP=199;GPV=1;SPV=0.0054687;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:87:68,19:37,7:31,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3036 chr21 8849824 . C T 0 PASS DP=253;GPV=1;SPV=0.049168;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:139:116,23:61,14:55,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3037 chr21 8852441 . T A 0 PASS DP=311;GPV=1;SPV=0.043592;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:184:153,31:52,4:101,27
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3038 chr21 8854470 . C A 0 PASS DP=237;GPV=1;SPV=0.048902;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:146:125,21:41,5:84,16
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3039 chr21 8868313 . G A 0 PASS DP=505;GPV=1;SPV=0.037241;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:275:236,39:134,17:102,22
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3040 chr21 8870443 . T A 0 PASS DP=292;GPV=1;SPV=0.044935;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:159:136,23:43,11:93,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3041 chr21 9006811 . C G 0 PASS DP=347;GPV=1;SPV=0.016226;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:186:159,27:74,10:85,17
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3042 chr21 9011354 . A G 0 PASS DP=377;GPV=1;SPV=0.024095;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:193:161,32:87,21:74,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3043 chr21 9025010 . A G 0 PASS DP=275;GPV=1;SPV=0.019533;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:154:138,16:45,4:93,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3044 chr21 9030942 . C G 0 PASS DP=376;GPV=1;SPV=0.039254;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:214:190,24:95,12:95,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3045 chr21 9033936 . T A 0 PASS DP=320;GPV=1;SPV=0.047518;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:167:128,22:68,14:60,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3046 chr21 9044257 . C T 0 PASS DP=211;GPV=1;SPV=0.044244;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:132:110,22:62,10:48,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3047 chr21 9056375 . GGTAA G 0 PASS DP=306;GPV=1;SPV=0.012078;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:165:137,28:85,24:52,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3048 chr21 9072877 . TGGA T 0 PASS DP=279;GPV=1;SPV=0.0061354;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:144:126,18:59,6:67,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3049 chr21 9073118 . G A 0 PASS DP=244;GPV=1;SPV=0.036973;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:125:104,21:55,10:49,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3050 chr21 9074353 . T C 0 PASS DP=431;GPV=1;SPV=0.028571;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:226:203,23:90,9:113,14
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3051 chr21 9075159 . C G 0 PASS DP=450;GPV=1;SPV=0.0088953;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:223:195,28:100,16:95,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3052 chr21 9075169 . C T 0 PASS DP=451;GPV=1;SPV=0.021315;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:227:198,29:104,17:94,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3053 chr21 9081112 . G A 0 PASS DP=338;GPV=1;SPV=0.046502;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:188:169,19:78,11:91,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3054 chr21 9098683 . A G 0 PASS DP=379;GPV=1;SPV=0.028976;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:209:172,35:100,18:72,17
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3055 chr21 9099661 . C G 0 PASS DP=323;GPV=1;SPV=0.00064544;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:177:148,29:74,10:74,19
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3056 chr21 9101268 . A G 0 PASS DP=426;GPV=1;SPV=0.042675;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:240:215,25:42,3:173,22
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3057 chr21 9135070 . A G 0 PASS DP=482;GPV=1;SPV=0.016766;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:279:242,37:121,22:121,15
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3058 chr21 9148053 . G A 0 PASS DP=478;GPV=1;SPV=0.015643;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:254:221,33:111,17:110,16
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3059 chr21 9151666 . T G 0 PASS DP=264;GPV=1;SPV=0.0063978;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:153:131,22:57,13:74,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3060 chr21 9153070 . C T 0 PASS DP=589;GPV=1;SPV=0.049622;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:321:266,46:133,24:133,22
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3061 chr21 9156546 . G A 0 PASS DP=274;GPV=1;SPV=0.046721;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:160:143,17:79,9:64,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3062 chr21 9165973 . T C 0 PASS DP=439;GPV=1;SPV=0.032983;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:240:214,26:104,15:110,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3063 chr21 9185069 . G A 0 PASS DP=457;GPV=1;SPV=0.012961;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:259:228,31:132,14:96,17
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3064 chr21 9186142 . T C 0 PASS DP=397;GPV=1;SPV=0.015658;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:225:202,23:112,13:90,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3065 chr21 9186193 . C T 0 PASS DP=389;GPV=1;SPV=0.022827;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:215:189,26:91,11:98,15
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3066 chr21 9190875 . G A 0 PASS DP=409;GPV=1;SPV=0.045307;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:224:199,25:96,11:103,14
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3067 chr21 9260710 . G A 0 PASS DP=590;GPV=1;SPV=0.032029;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:325:292,33:125,10:167,23
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3068 chr21 9268737 . A T 0 PASS DP=367;GPV=1;SPV=0.041187;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:196:169,27:69,8:100,19
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3069 chr21 9293655 . C T 0 PASS DP=348;GPV=1;SPV=0.023033;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:210:179,31:92,20:87,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3070 chr21 9295067 . C G 0 PASS DP=254;GPV=1;SPV=0.041289;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:151:131,20:48,8:83,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3071 chr21 9302711 . T C 0 PASS DP=467;GPV=1;SPV=0.015684;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:267:229,38:105,20:124,18
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3072 chr21 9308811 . G A 0 PASS DP=300;GPV=1;SPV=0.035184;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:171:145,26:106,19:39,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3073 chr21 9332356 . T G 0 PASS DP=478;GPV=1;SPV=0.043725;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:258:229,29:110,17:119,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3074 chr21 9333921 . T A 0 PASS DP=240;GPV=1;SPV=0.026718;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:131:113,18:25,2:88,16
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3075 chr21 9337912 . C T 0 PASS DP=461;GPV=1;SPV=0.029736;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:245:220,25:107,13:113,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3076 chr21 9357361 . G C 0 PASS DP=412;GPV=1;SPV=0.037824;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:214:188,26:88,14:100,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3077 chr21 9365733 . G A 0 PASS DP=642;GPV=1;SPV=0.010632;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:336:289,45:159,21:130,24
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3078 chr21 9369383 . T A 0 PASS DP=463;GPV=1;SPV=0.013096;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:246:211,35:82,7:129,28
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3079 chr21 9370023 . C T 0 PASS DP=684;GPV=1;SPV=0.0077443;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:382:333,49:165,28:168,21
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3080 chr21 9536188 . C CA 0 PASS DP=46;GPV=1;SPV=0.024163;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:10,7:6,6:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3081 chr21 9607113 . G GT 0 PASS DP=94;GPV=1;SPV=0.017175;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:43,6:19,3:24,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3082 chr21 9612085 . A C 0 PASS DP=139;GPV=1;SPV=0.039782;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:76:61,15:32,8:29,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3083 chr21 9627948 . A G 0 PASS DP=122;GPV=1;SPV=0.0034366;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:76:61,15:33,9:28,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3084 chr21 9655058 . G A 0 PASS DP=180;GPV=1;SPV=0.01095;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:106:83,23:53,13:30,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3085 chr21 9666461 . T C 0 PASS DP=172;GPV=1;SPV=0.02113;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:101:78,23:34,11:44,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3086 chr21 9707048 . C T 0 PASS DP=175;GPV=1;SPV=0.034081;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:98:80,18:40,9:40,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3087 chr21 9792584 . C G 0 PASS DP=169;GPV=1;SPV=0.0063498;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:97:72,25:34,12:38,13
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3088 chr21 9811163 . G A 0 PASS DP=228;GPV=1;SPV=0.041958;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:134:109,25:67,14:42,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3089 chr21 9816521 . C G 0 PASS DP=44;GPV=1;SPV=0.04073;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:22,7:8,1:14,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3090 chr21 9824548 . A C 0 PASS DP=509;GPV=1;SPV=0.021372;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:275:245,30:106,9:139,21
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3091 chr21 9829679 . G C 0 PASS DP=22;GPV=1;SPV=0.067669;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:8,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3092 chr21 9850534 . C A 0 PASS DP=157;GPV=1;SPV=0.012381;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:83:63,20:38,12:25,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3093 chr21 9874503 . A T 0 PASS DP=115;GPV=1;SPV=0.0075878;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:68:51,17:23,5:28,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3094 chr21 9881164 . C T 0 PASS DP=147;GPV=1;SPV=0.033327;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:87:71,16:28,6:43,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3095 chr21 9883000 . C T 0 PASS DP=191;GPV=1;SPV=0.018617;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:108:88,20:42,7:46,13
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3096 chr21 9887652 . A T 0 PASS DP=173;GPV=1;SPV=0.044135;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:96:79,17:36,8:43,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3097 chr21 9898097 . G T 0 PASS DP=169;GPV=1;SPV=0.02564;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:96:75,21:37,13:38,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3098 chr21 9917343 . G A 0 PASS DP=160;GPV=1;SPV=0.0034987;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:95:69,26:36,11:33,15
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3099 chr21 9986792 . C A 0 PASS DP=112;GPV=1;SPV=0.0057226;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:72:54,18:32,14:22,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3100 chr21 10044542 . C T 0 PASS DP=170;GPV=1;SPV=0.046497;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:93:75,18:34,9:41,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3101 chr21 10105062 . G A 0 PASS DP=77;GPV=1;SPV=0.023995;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:29,8:8,3:21,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3102 chr21 10153677 . G A 0 PASS DP=77;GPV=1;SPV=0.029773;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:38,6:25,4:13,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3103 chr21 10153725 . T C 0 PASS DP=98;GPV=1;SPV=0.032698;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:46,6:35,4:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3104 chr21 10162749 . C T 0 PASS DP=147;GPV=1;SPV=0.0243;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:88:73,15:38,8:35,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3105 chr21 10326762 . T C 0 PASS DP=324;GPV=1;SPV=0.047718;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:156:134,22:75,16:59,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3106 chr21 10327082 . C T 0 PASS DP=275;GPV=1;SPV=0.034031;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:161:141,20:79,10:62,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3107 chr21 10329305 . C T 0 PASS DP=299;GPV=1;SPV=0.039976;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:166:145,21:68,6:77,15
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3108 chr21 10342457 . G C 0 PASS DP=333;GPV=1;SPV=0.010474;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:180:153,27:81,12:72,15
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3109 chr21 10351577 . G A 0 PASS DP=263;GPV=1;SPV=0.017232;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:136:114,22:54,6:60,16
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3110 chr21 10424416 . A C 0 PASS DP=569;GPV=1;SPV=0.045468;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:320:273,47:127,22:146,25
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3111 chr21 10429776 . A G 0 PASS DP=549;GPV=1;SPV=0.026308;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:309:269,40:120,24:149,16
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3112 chr21 10440190 . G C 0 PASS DP=328;GPV=1;SPV=0.0084739;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:195:168,27:74,14:94,13
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3113 chr21 10449909 . C A 0 PASS DP=272;GPV=1;SPV=0.034798;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:155:138,17:78,7:60,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3114 chr21 10450507 . T C 0 PASS DP=446;GPV=1;SPV=0.010601;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:253:225,28:105,17:120,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3115 chr21 10453619 . C T 0 PASS DP=197;GPV=1;SPV=0.043106;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:118:98,20:52,10:46,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3116 chr21 10455786 . AAAT A 0 PASS DP=356;GPV=1;SPV=0.0052846;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:187:168,19:54,13:114,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3117 chr21 10455856 . G A 0 PASS DP=331;GPV=1;SPV=0.01364;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:186:165,21:68,8:97,13
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3118 chr21 10456762 . C A 0 PASS DP=286;GPV=1;SPV=0.049637;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:168:149,19:68,4:81,15
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3119 chr21 10474414 . C A 0 PASS DP=331;GPV=1;SPV=0.043199;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:175:156,19:91,11:65,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3120 chr21 10487921 . GTATCT G 0 PASS DP=90;GPV=1;SPV=0.038944;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:40,7:27,6:13,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3121 chr21 10556894 . A AT 0 PASS DP=123;GPV=1;SPV=0.0092117;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:71:51,20:28,11:23,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3122 chr21 10607511 . G A 0 PASS DP=201;GPV=1;SPV=0.0043731;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:109:82,27:42,15:40,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3123 chr21 10613891 . G C 0 PASS DP=154;GPV=1;SPV=0.0071254;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:87:65,22:43,10:22,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3124 chr21 10633425 . C T 0 PASS DP=138;GPV=1;SPV=0.0024813;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:72:51,21:26,7:25,14
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3125 chr21 10654765 . CATTCT C 0 PASS DP=110;GPV=1;SPV=0.005319;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:66:53,13:31,7:22,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3126 chr21 10663000 . C G 0 PASS DP=112;GPV=1;SPV=0.024005;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:67:60,7:26,4:34,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3127 chr21 10701889 . A T 0 PASS DP=164;GPV=1;SPV=0.04548;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:99:79,20:47,9:32,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3128 chr21 10722821 . C T 0 PASS DP=180;GPV=1;SPV=0.016435;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:121:97,24:47,9:50,15
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3129 chr21 10733602 . AT A 0 PASS DP=125;GPV=1;SPV=0.028662;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:72:19,10:10,5:9,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3130 chr21 10735336 . T C 0 PASS DP=203;GPV=1;SPV=0.024194;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:115:92,23:39,10:53,13
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3131 chr21 10804405 . T C 0 PASS DP=395;GPV=1;SPV=0.018756;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:225:195,30:101,17:94,13
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3132 chr21 13016290 . AAAG A 0 PASS DP=112;GPV=1;SPV=0.043586;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:72:59,13:23,5:36,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3133 chr21 13020336 . G A 0 PASS DP=89;GPV=1;SPV=0.048266;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:46,9:26,6:20,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3134 chr21 13100149 . C T 0 PASS DP=75;GPV=1;SPV=0.053325;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:41,6:31,2:10,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3135 chr21 13131259 . C T 0 PASS DP=47;GPV=1;SPV=0.019732;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,9:7,2:11,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3136 chr21 13189369 . G A 0 PASS DP=92;GPV=1;SPV=0.038776;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:44,5:24,1:20,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3137 chr21 13434028 . T C 0 PASS DP=62;GPV=1;SPV=0.14744;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:12,2:23,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3138 chr21 13576092 . T A 0 PASS DP=31;GPV=1;SPV=0.027077;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,9:4,2:6,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3139 chr21 15120296 . C CT 0 PASS DP=66;GPV=1;SPV=0.11412;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:20,2:15,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3140 chr21 18871297 . T C 0 PASS DP=42;GPV=1;SPV=0.0030458;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,11:7,4:9,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3141 chr21 19345800 . CTA C 0 PASS DP=139;GPV=1;SPV=0.0094826;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:70:47,9:25,3:22,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3142 chr21 19345830 . A ATGTC 0 PASS DP=160;GPV=1;SPV=0.0073403;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:79:47,6:28,2:19,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3143 chr21 19457333 . T G 0 PASS DP=66;GPV=1;SPV=1.5052e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:21,16:10,8:11,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3144 chr21 19468054 . G A 0 PASS DP=74;GPV=1;SPV=0.00085179;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:27,9:14,6:13,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3145 chr21 20126646 . CA C 0 PASS DP=47;GPV=1;SPV=0.0053231;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,11:3,6:13,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3146 chr21 20126650 . A G 0 PASS DP=52;GPV=1;SPV=0.00041537;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:15,14:2,7:13,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3147 chr21 20490603 . AT A 0 PASS DP=38;GPV=1;SPV=0.024751;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:12,7:5,4:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3148 chr21 21655214 . C A 0 PASS DP=60;GPV=1;SPV=0.0033714;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:26,10:13,4:13,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3149 chr21 22113150 . CA C 0 PASS DP=45;GPV=1;SPV=0.019411;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:18,14:12,6:6,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3150 chr21 23404392 . A G 0 PASS DP=75;GPV=1;SPV=0.00057587;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:34,16:23,10:11,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3151 chr21 23740006 . T G 0 PASS DP=66;GPV=1;SPV=0.01322;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:30,7:17,4:13,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3152 chr21 24121385 . A AT 0 PASS DP=35;GPV=1;SPV=0.017499;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:8,8:7,4:1,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3153 chr21 25228144 . A AATAT 0 PASS DP=30;GPV=1;SPV=0.062963;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,5:8,4:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3154 chr21 27347940 . AAG A 0 PASS DP=35;GPV=1;SPV=0.10365;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:11,4:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3155 chr21 27425073 . A ATTG 0 PASS DP=35;GPV=1;SPV=0.0062699;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:10,11:4,5:6,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3156 chr21 27425120 . T C 0 PASS DP=32;GPV=1;SPV=0.025287;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,5:4,2:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3157 chr21 27656003 . GTATATATA G 0 PASS DP=28;GPV=1;SPV=0.014757;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:6,8:3,6:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3158 chr21 27687686 . T A 0 PASS DP=34;GPV=1;SPV=0.055718;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:4,3:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3159 chr21 28888397 . C A 0 PASS DP=61;GPV=1;SPV=4.965e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:18,12:13,9:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3160 chr21 29054600 . ATTTTTT A 0 PASS DP=39;GPV=1;SPV=0.049571;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:11,11:5,6:6,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3161 chr21 29712085 . C T 0 PASS DP=65;GPV=1;SPV=0.026903;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:15,7:10,5:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3162 chr21 31228221 . A T 0 PASS DP=18;GPV=1;SPV=0.051282;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:4,4:3,3:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3163 chr21 32144203 . AGAT A 0 PASS DP=70;GPV=1;SPV=0.089706;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:18,3:17,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3164 chr21 32147948 . C CAA 0 PASS DP=27;GPV=1;SPV=0.013595;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:5,7:4,6:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3165 chr21 32614249 . CT C 0 PASS DP=27;GPV=1;SPV=0.0087567;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:6,12:6,11:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3166 chr21 32672079 . AAAAAAG A 0 PASS DP=30;GPV=1;SPV=0.009553;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:5,5:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3167 chr21 32892711 . C T 0 PASS DP=39;GPV=1;SPV=0.086845;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:13,4:2,2:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3168 chr21 33124400 . G C 0 PASS DP=68;GPV=1;SPV=0.008323;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:31,8:14,4:17,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3169 chr21 33129288 . T TTATTTTATTA 0 PASS DP=52;GPV=1;SPV=0.028986;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:7,13:0,11:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3170 chr21 33191488 . G T 0 PASS DP=56;GPV=1;SPV=0.084986;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:30,5:16,4:14,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3171 chr21 33191496 . T C 0 PASS DP=45;GPV=1;SPV=0.004355;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:11,9:6,8:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3172 chr21 33261035 . C CTTTTT 0 PASS DP=21;GPV=1;SPV=0.022136;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,7:5,4:1,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3173 chr21 33890401 . C G 0 PASS DP=62;GPV=1;SPV=0.00099376;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,9:13,3:9,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3174 chr21 34693975 . C CT 0 PASS DP=31;GPV=1;SPV=0.0401;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,8:7,4:3,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3175 chr21 35429426 . TC T 0 PASS DP=47;GPV=1;SPV=0.24577;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:31,5:20,1:11,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3176 chr21 36026545 . T C 0 PASS DP=65;GPV=1;SPV=0.10903;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:34,4:16,2:18,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3177 chr21 37417537 . T C 0 PASS DP=33;GPV=1;SPV=0.0090729;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:0,6:12,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3178 chr21 37515456 . G C 0 PASS DP=70;GPV=1;SPV=0.02764;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:38,8:16,3:22,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3179 chr21 37557089 . CAAAAAAAAAAAAA C 0 PASS DP=29;GPV=1;SPV=0.04053;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,8:7,7:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3180 chr21 37828386 . G T 0 PASS DP=79;GPV=1;SPV=7.7207e-06;SS=2;SSC=51;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:26,16:14,7:12,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3181 chr21 38808616 . GT G 0 PASS DP=70;GPV=1;SPV=0.080505;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:34,4:13,2:21,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3182 chr21 38808620 . G T 0 PASS DP=64;GPV=1;SPV=0.083134;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:30,4:11,2:19,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3183 chr21 39158395 . T TAA 0 PASS DP=42;GPV=1;SPV=0.0067968;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:17,11:7,9:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3184 chr21 39249913 . G GGT 0 PASS DP=60;GPV=1;SPV=0.029893;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:26,9:9,8:17,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3185 chr21 39639395 . T C 0 PASS DP=48;GPV=1;SPV=0.048573;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,6:8,1:10,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3186 chr21 39639399 . T C 0 PASS DP=54;GPV=1;SPV=0.064743;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:10,1:14,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3187 chr21 41112550 . G GA 0 PASS DP=34;GPV=1;SPV=0.12905;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:12,2:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3188 chr21 41781019 . G A 0 PASS DP=27;GPV=1;SPV=0.1;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,2:5,2:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3189 chr21 41781023 . G A 0 PASS DP=27;GPV=1;SPV=0.1;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,2:5,2:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3190 chr21 41814053 . G A 0 PASS DP=33;GPV=1;SPV=0.01497;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,9:3,4:7,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3191 chr21 41874521 . A ATTT 0 PASS DP=29;GPV=1;SPV=0.054106;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,5:4,4:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3192 chr21 42463781 . TAAA T 0 PASS DP=48;GPV=1;SPV=0.0066039;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:14,12:7,5:7,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3193 chr21 42719645 . A T 0 PASS DP=62;GPV=1;SPV=0.027697;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:25,11:8,5:17,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3194 chr21 43733251 . CCA C 0 PASS DP=23;GPV=1;SPV=0.15415;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:2,1:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3195 chr21 43961524 . C T 0 PASS DP=27;GPV=1;SPV=0.044851;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:8,9:4,7:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3196 chr21 44257699 . AATAAAT A 0 PASS DP=65;GPV=1;SPV=0.10911;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:19,6:11,3:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3197 chr21 44533241 . G A 0 PASS DP=81;GPV=1;SPV=4.9392e-06;SS=2;SSC=53;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:25,15:14,9:11,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3198 chr21 44533242 . C T 0 PASS DP=80;GPV=1;SPV=5.5913e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:28,13:16,7:12,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3199 chr21 44797741 . A AT 0 PASS DP=28;GPV=1;SPV=0.030075;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:7,10:3,6:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3200 chr21 44981815 . CG C 0 PASS DP=26;GPV=1;SPV=0.21538;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:13,3:7,1:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3201 chr21 45134235 . G GGGTGTGTGCCCGACAGT 0 PASS DP=30;GPV=1;SPV=0.12884;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:12,1:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3202 chr21 45631776 . G T 0 PASS DP=82;GPV=1;SPV=4.0612e-07;SS=2;SSC=63;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:24,19:11,9:13,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3203 chr21 45750398 . C T 0 PASS DP=50;GPV=1;SPV=0.073823;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:19,5:12,3:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3204 chr21 46041631 . C CA 0 PASS DP=54;GPV=1;SPV=0.11371;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:14,2:14,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3205 chr21 46349569 . C T 0 PASS DP=74;GPV=1;SPV=0.0011799;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:30,10:20,5:10,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3206 chr21 46696992 . A G 0 PASS DP=44;GPV=1;SPV=0.031815;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,7:8,4:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3207 chr22 10521617 . T C 0 PASS DP=17;GPV=1;SPV=0.12353;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:6,3:6,3:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3208 chr22 10534739 . T G 0 PASS DP=38;GPV=1;SPV=0.11996;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:9,3:10,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3209 chr22 10568215 . C A 0 PASS DP=45;GPV=1;SPV=0.05384;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:11,3:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3210 chr22 10573921 . G C 0 PASS DP=28;GPV=1;SPV=0.1893;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:0,0:15,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3211 chr22 10604932 . T A 0 PASS DP=136;GPV=1;SPV=0.022475;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:86:69,17:41,11:28,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3212 chr22 10648827 . A C 0 PASS DP=63;GPV=1;SPV=0.021526;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:26,13:18,8:8,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3213 chr22 10687050 . G A 0 PASS DP=289;GPV=1;SPV=0.020979;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:161:138,23:92,19:46,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3214 chr22 10687167 . G T 0 PASS DP=246;GPV=1;SPV=0.018477;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:128:106,22:64,13:42,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3215 chr22 10695790 . C G 0 PASS DP=260;GPV=1;SPV=0.035685;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:146:126,20:72,9:54,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3216 chr22 10698578 . T C 0 PASS DP=106;GPV=1;SPV=0.0037333;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:62:49,13:25,8:24,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3217 chr22 10699522 . CGCG C 0 PASS DP=85;GPV=1;SPV=0.029562;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:37,15:19,8:18,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3218 chr22 10707152 . CTT C 0 PASS DP=398;GPV=1;SPV=0.031448;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:232:206,26:113,11:93,15
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3219 chr22 10709799 . A T 0 PASS DP=397;GPV=1;SPV=0.033317;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:213:188,25:90,12:98,13
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3220 chr22 10735435 . G A 0 PASS DP=528;GPV=1;SPV=0.0067305;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:289:258,31:121,22:137,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3221 chr22 10750506 . G T 0 PASS DP=189;GPV=1;SPV=0.017549;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:107:85,22:39,10:46,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3222 chr22 10755128 . A G 0 PASS DP=414;GPV=1;SPV=0.022789;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:227:203,24:114,15:89,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3223 chr22 10755218 . T G 0 PASS DP=327;GPV=1;SPV=0.044688;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:189:163,26:73,15:90,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3224 chr22 10767552 . A G 0 PASS DP=320;GPV=1;SPV=0.023574;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:180:150,30:66,10:84,20
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3225 chr22 10768772 . T A 0 PASS DP=373;GPV=1;SPV=0.00057237;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:213:173,40:76,13:97,27
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3226 chr22 10773218 . A T 0 PASS DP=259;GPV=1;SPV=0.018599;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:125:111,14:64,9:47,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3227 chr22 11025747 . CA C 0 PASS DP=101;GPV=1;SPV=0.010302;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:19,10:10,4:9,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3228 chr22 11025749 . A C 0 PASS DP=121;GPV=1;SPV=0.018274;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:61:53,8:19,4:34,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3229 chr22 11036708 . C T 0 PASS DP=339;GPV=1;SPV=0.035289;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:183:158,25:96,15:62,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3230 chr22 11056722 . A G 0 PASS DP=317;GPV=1;SPV=0.041051;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:187:128,21:47,7:81,14
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3231 chr22 11060602 . G A 0 PASS DP=298;GPV=1;SPV=0.0078577;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:166:148,18:83,12:65,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3232 chr22 11066008 . A C 0 PASS DP=230;GPV=1;SPV=0.038415;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:124:109,15:61,10:48,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3233 chr22 11284932 . C G 0 PASS DP=134;GPV=1;SPV=0.00061791;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:83:56,27:30,18:26,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3234 chr22 11294641 . T TAAA 0 PASS DP=207;GPV=1;SPV=0.044607;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:119:86,18:49,9:37,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3235 chr22 11356705 . G T 0 PASS DP=124;GPV=1;SPV=0.039117;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:67:54,13:33,8:21,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3236 chr22 11456711 . C A 0 PASS DP=60;GPV=1;SPV=0.13544;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:12,1:21,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3237 chr22 11461749 . T G 0 PASS DP=179;GPV=1;SPV=0.026656;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:95:75,20:36,8:39,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3238 chr22 11786215 . G C 0 PASS DP=141;GPV=1;SPV=0.032597;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:72:63,9:23,3:40,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3239 chr22 11811311 . T TA 0 PASS DP=47;GPV=1;SPV=0.0034395;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:8,4:9,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3240 chr22 11829601 . G A 0 PASS DP=282;GPV=1;SPV=0.043352;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:168:148,20:90,10:58,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3241 chr22 11852874 . A G 0 PASS DP=131;GPV=1;SPV=0.019055;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:66:53,13:8,2:45,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3242 chr22 11876554 . G T 0 PASS DP=302;GPV=1;SPV=0.028743;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:182:154,28:55,10:99,18
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3243 chr22 11878392 . A C 0 PASS DP=353;GPV=1;SPV=0.049172;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:179:155,24:75,9:80,15
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3244 chr22 11902643 . A G 0 PASS DP=358;GPV=1;SPV=0.039593;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:204:180,24:56,5:124,19
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3245 chr22 11906467 . C A 0 PASS DP=142;GPV=1;SPV=0.040057;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:76:60,16:33,13:27,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3246 chr22 11914787 . T C 0 PASS DP=472;GPV=1;SPV=0.030584;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:256:221,35:130,22:91,13
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3247 chr22 11915942 . C A 0 PASS DP=480;GPV=1;SPV=0.045409;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:266:231,35:98,13:133,22
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3248 chr22 11916460 . C A 0 PASS DP=550;GPV=1;SPV=0.020314;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:300:263,37:123,18:140,19
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3249 chr22 11925198 . C T 0 PASS DP=213;GPV=1;SPV=0.023316;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:133:109,24:57,11:52,13
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3250 chr22 11925199 . A G 0 PASS DP=213;GPV=1;SPV=0.011461;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:132:104,28:52,13:52,15
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3251 chr22 11951633 . G T 0 PASS DP=295;GPV=1;SPV=0.018415;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:153:134,19:79,13:55,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3252 chr22 11972915 . A C 0 PASS DP=91;GPV=1;SPV=0.0019044;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:38,13:18,7:20,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3253 chr22 11973248 . CA C 0 PASS DP=244;GPV=1;SPV=0.013251;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:144:117,27:66,15:51,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3254 chr22 12034084 . A T 0 PASS DP=275;GPV=1;SPV=0.0032644;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:157:134,23:47,9:87,14
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3255 chr22 12038909 . A T 0 PASS DP=431;GPV=1;SPV=0.042967;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:247:216,31:99,6:117,25
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3256 chr22 12051301 . G T 0 PASS DP=560;GPV=1;SPV=0.029679;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:307:271,36:151,19:120,17
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3257 chr22 12051633 . A T 0 PASS DP=488;GPV=1;SPV=0.023375;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:263:235,28:68,18:167,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3258 chr22 12078277 . T C 0 PASS DP=218;GPV=1;SPV=0.03677;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:125:112,13:59,2:53,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3259 chr22 12100010 . T A 0 PASS DP=342;GPV=1;SPV=0.0097233;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:181:158,23:106,13:52,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3260 chr22 12118817 . CT C 0 PASS DP=346;GPV=1;SPV=0.01697;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:201:158,28:93,17:65,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3261 chr22 12130240 . T C 0 PASS DP=143;GPV=1;SPV=0.048024;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:87:69,18:27,4:42,14
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3262 chr22 12199154 . C A 0 PASS DP=386;GPV=1;SPV=0.0045877;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:197:172,25:76,13:96,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3263 chr22 12204165 . A T 0 PASS DP=395;GPV=1;SPV=0.00035321;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:200:175,25:97,11:78,14
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3264 chr22 12204449 . G A 0 PASS DP=481;GPV=1;SPV=0.0026742;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:258:231,27:94,4:137,23
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3265 chr22 12206096 . T G 0 PASS DP=150;GPV=1;SPV=0.031718;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:79:66,13:27,2:39,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3266 chr22 12206854 . C T 0 PASS DP=209;GPV=1;SPV=0.028777;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:112:100,12:39,7:61,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3267 chr22 12212222 . G GGT 0 PASS DP=99;GPV=1;SPV=0.024844;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:40,5:18,1:22,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3268 chr22 12312303 . C A 0 PASS DP=65;GPV=1;SPV=0.031275;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:27,8:3,3:24,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3269 chr22 12332156 . A G 0 PASS DP=16;GPV=1;SPV=0.23333;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:5,1:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3270 chr22 12346787 . G C 0 PASS DP=83;GPV=1;SPV=0.015879;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:29,13:14,9:15,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3271 chr22 12379848 . C T 0 PASS DP=192;GPV=1;SPV=0.035155;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:124:102,22:47,8:55,14
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3272 chr22 12499442 . G A 0 PASS DP=191;GPV=1;SPV=0.024298;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:105:85,20:39,8:46,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3273 chr22 12591569 . TAA T 0 PASS DP=185;GPV=1;SPV=0.021065;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:106:84,22:51,14:33,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3274 chr22 12609888 . T C 0 PASS DP=209;GPV=1;SPV=0.001808;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:129:101,28:53,6:48,22
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3275 chr22 12696321 . G C 0 PASS DP=226;GPV=1;SPV=0.041682;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:135:111,24:58,10:53,14
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3276 chr22 12700781 . G A 0 PASS DP=171;GPV=1;SPV=0.043509;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:106:89,17:50,10:39,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3277 chr22 12713363 . C A 0 PASS DP=103;GPV=1;SPV=0.019424;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:45,8:18,3:27,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3278 chr22 12783137 . A G 0 PASS DP=214;GPV=1;SPV=0.016863;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:114:101,13:28,4:73,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3279 chr22 12806249 . G A 0 PASS DP=111;GPV=1;SPV=0.044045;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:63:51,12:25,8:26,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3280 chr22 12814734 . G A 0 PASS DP=172;GPV=1;SPV=0.0016612;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:94:76,18:38,11:38,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3281 chr22 12814800 . T A 0 PASS DP=191;GPV=1;SPV=0.01657;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:102:80,18:44,13:36,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3282 chr22 12869359 . G A 0 PASS DP=530;GPV=1;SPV=0.028473;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:281:250,31:98,21:152,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3283 chr22 12874093 . C T 0 PASS DP=397;GPV=1;SPV=0.032139;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:240:214,26:100,8:114,18
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3284 chr22 12877659 . G A 0 PASS DP=100;GPV=1;SPV=0.038808;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:64:57,7:45,4:12,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3285 chr22 14956902 . G A 0 PASS DP=48;GPV=1;SPV=0.12206;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:0,0:25,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3286 chr22 15449266 . T C 0 PASS DP=59;GPV=1;SPV=0.017411;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:29,8:14,5:15,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3287 chr22 15470739 . G C 0 PASS DP=91;GPV=1;SPV=0.022125;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:46,11:20,4:26,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3288 chr22 15487624 . T G 0 PASS DP=71;GPV=1;SPV=0.0059872;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:33,9:16,2:17,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3289 chr22 15546506 . A G 0 PASS DP=26;GPV=1;SPV=0.20468;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:4,2:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3290 chr22 15579564 . G C 0 PASS DP=53;GPV=1;SPV=0.17881;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:31,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3291 chr22 15631216 . G A 0 PASS DP=111;GPV=1;SPV=0.029441;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:68:53,15:25,8:28,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3292 chr22 15706889 . CT C 0 PASS DP=107;GPV=1;SPV=0.00037632;SS=2;SSC=34;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:34,22:9,8:25,14
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3293 chr22 15732030 . G C 0 PASS DP=86;GPV=1;SPV=0.046808;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:44,9:20,4:24,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3294 chr22 15753796 . G T 0 PASS DP=45;GPV=1;SPV=0.13742;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:24,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3295 chr22 15769648 . G C 0 PASS DP=51;GPV=1;SPV=0.047515;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,10:10,6:10,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3296 chr22 15910749 . C G 0 PASS DP=33;GPV=1;SPV=0.0045524;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:8,6:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3297 chr22 16433519 . G C 0 PASS DP=228;GPV=1;SPV=0.028339;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:136:119,17:66,10:53,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3298 chr22 16457892 . G A 0 PASS DP=80;GPV=1;SPV=0.043007;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:38,8:16,3:22,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3299 chr22 16669926 . A G 0 PASS DP=83;GPV=1;SPV=8.0594e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:28,16:15,7:13,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3300 chr22 16877536 . GAAGAA G 0 PASS DP=35;GPV=1;SPV=0.13971;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:12,1:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3301 chr22 17250563 . T TA 0 PASS DP=73;GPV=1;SPV=0.10954;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:33,5:18,2:15,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3302 chr22 17875682 . T TAAA 0 PASS DP=57;GPV=1;SPV=0.023574;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:10,13:6,9:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3303 chr22 17959010 . G GTT 0 PASS DP=35;GPV=1;SPV=0.22398;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,4:6,3:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3304 chr22 18196944 . G C 0 PASS DP=104;GPV=1;SPV=0.015094;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:43,13:21,5:22,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3305 chr22 18359171 . C T 0 PASS DP=106;GPV=1;SPV=0.041069;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:64:55,9:21,8:34,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3306 chr22 18369572 . T C 0 PASS DP=30;GPV=1;SPV=0.054634;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,8:5,4:9,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3307 chr22 18627931 . G A 0 PASS DP=51;GPV=1;SPV=0.03433;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:21,8:3,3:18,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3308 chr22 18738690 . C G 0 PASS DP=150;GPV=1;SPV=0.023135;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:84:75,9:43,8:32,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3309 chr22 18743457 . A G 0 PASS DP=157;GPV=1;SPV=0.007669;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:99:82,17:45,12:37,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3310 chr22 18748805 . A T 0 PASS DP=87;GPV=1;SPV=0.037417;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:41,8:23,3:18,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3311 chr22 18750670 . G A 0 PASS DP=51;GPV=1;SPV=0.058083;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:28,7:23,6:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3312 chr22 18755626 . G T 0 PASS DP=52;GPV=1;SPV=0.044512;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:26,6:5,1:21,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3313 chr22 18849248 . G A 0 PASS DP=135;GPV=1;SPV=0.0043627;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:74:56,18:19,10:37,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3314 chr22 18852936 . C T 0 PASS DP=34;GPV=1;SPV=0.10447;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:16,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3315 chr22 18853870 . A G 0 PASS DP=38;GPV=1;SPV=0.024656;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:11,3:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3316 chr22 18940041 . C T 0 PASS DP=33;GPV=1;SPV=0.023692;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,10:8,6:3,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3317 chr22 18953985 . C G 0 PASS DP=86;GPV=1;SPV=0.00018809;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:33,12:14,6:19,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3318 chr22 19087971 . T G 0 PASS DP=59;GPV=1;SPV=4.9327e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:20,19:8,10:12,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3319 chr22 20170031 . T G 0 PASS DP=72;GPV=1;SPV=0.00051413;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:29,12:17,3:12,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3320 chr22 20342730 . A G 0 PASS DP=51;GPV=1;SPV=0.016864;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:21,11:6,8:15,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3321 chr22 20592866 . G GAA 0 PASS DP=23;GPV=1;SPV=0.063246;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,5:6,4:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3322 chr22 20655979 . G T 0 PASS DP=42;GPV=1;SPV=0.18293;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:2,2:22,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3323 chr22 21165958 . C T 0 PASS DP=59;GPV=1;SPV=0.0038961;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:16,12:7,3:9,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3324 chr22 21175242 . A G 0 PASS DP=46;GPV=1;SPV=0.058895;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:12,1:10,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3325 chr22 21225295 . G A 0 PASS DP=60;GPV=1;SPV=0.017354;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:24,14:15,6:9,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3326 chr22 21248916 . T C 0 PASS DP=198;GPV=1;SPV=0.0045935;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:92:75,17:37,9:38,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3327 chr22 21334672 . GTA G 0 PASS DP=56;GPV=1;SPV=0.012782;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:26,8:18,7:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3328 chr22 21541225 . TACAC T 0 PASS DP=53;GPV=1;SPV=4.45e-05;SS=2;SSC=43;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:15,13:9,5:6,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3329 chr22 21659370 . TAAA T 0 PASS DP=32;GPV=1;SPV=0.030702;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:4,13:1,8:3,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3330 chr22 21659377 . A C 0 PASS DP=39;GPV=1;SPV=0.044451;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,11:9,8:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3331 chr22 22267277 . T C 0 PASS DP=79;GPV=1;SPV=0.028065;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:37,9:15,1:22,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3332 chr22 22633065 . G A 0 PASS DP=33;GPV=1;SPV=0.17876;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:9,2:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3333 chr22 24277946 . C T 0 PASS DP=78;GPV=1;SPV=0.047016;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:32,11:14,8:18,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3334 chr22 24649431 . G T 0 PASS DP=93;GPV=1;SPV=0.010003;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:46,9:28,6:18,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3335 chr22 24659588 . A G 0 PASS DP=75;GPV=1;SPV=0.033359;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:34,5:14,2:20,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3336 chr22 25910305 . C T 0 PASS DP=70;GPV=1;SPV=0.040009;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:36,6:19,2:17,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3337 chr22 27114706 . C CAAA 0 PASS DP=32;GPV=1;SPV=0.056191;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:10,7:8,6:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3338 chr22 29111617 . A C 0 PASS DP=48;GPV=1;SPV=0.21053;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:7,2:4,1:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3339 chr22 29906290 . A G 0 PASS DP=48;GPV=1;SPV=0.07478;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:14,4:12,1:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3340 chr22 30623903 . CAT C 0 PASS DP=80;GPV=1;SPV=0.031173;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:36,5:23,4:13,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3341 chr22 32157497 . AT A 0 PASS DP=79;GPV=1;SPV=0.015097;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:33,12:20,8:13,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3342 chr22 32483849 . G A 0 PASS DP=76;GPV=1;SPV=2.4486e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:27,16:16,9:11,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3343 chr22 32640189 . C A 0 PASS DP=78;GPV=1;SPV=5.1989e-06;SS=2;SSC=52;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:20,12:12,2:8,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3344 chr22 32988328 . T C 0 PASS DP=46;GPV=1;SPV=0.10755;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:10,1:13,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3345 chr22 32990403 . TCCAG T 0 PASS DP=38;GPV=1;SPV=0.052464;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,5:8,3:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3346 chr22 33411588 . C A 0 PASS DP=78;GPV=1;SPV=7.9911e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:28,13:9,8:19,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3347 chr22 33450642 . G GAT 0 PASS DP=43;GPV=1;SPV=0.062714;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:12,6:6,4:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3348 chr22 35602210 . C T 0 PASS DP=71;GPV=1;SPV=0.036731;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:36,11:20,5:16,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3349 chr22 36718271 . C CTT 0 PASS DP=28;GPV=1;SPV=0.036522;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,6:5,5:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3350 chr22 36738070 . C A 0 PASS DP=66;GPV=1;SPV=0.10931;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:30,4:17,2:13,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3351 chr22 36896650 . GAGGA G 0 PASS DP=35;GPV=1;SPV=0.024846;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:8,6:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3352 chr22 37344235 . T C 0 PASS DP=27;GPV=1;SPV=0.0057971;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,8:4,4:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3353 chr22 37511357 . CAA C 0 PASS DP=22;GPV=1;SPV=0.063246;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,5:6,4:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3354 chr22 37661331 . A G 0 PASS DP=58;GPV=1;SPV=0.013888;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:15,9:11,5:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3355 chr22 37711615 . AAAACCC A 0 PASS DP=39;GPV=1;SPV=0.33771;SS=2;SSC=4;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:20,4:11,3:9,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3356 chr22 38937568 . TGC T 0 PASS DP=73;GPV=1;SPV=0.028808;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:28,9:13,4:15,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3357 chr22 41212396 . CTT C 0 PASS DP=25;GPV=1;SPV=0.048122;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,8:3,4:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3358 chr22 42225000 . C CTT 0 PASS DP=30;GPV=1;SPV=0.13025;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,5:6,2:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3359 chr22 42445357 . C CT 0 PASS DP=31;GPV=1;SPV=0.018088;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:9,13:6,10:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3360 chr22 43587233 . G A 0 PASS DP=70;GPV=1;SPV=0.0053871;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:32,9:15,5:17,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3361 chr22 43878682 . GCCAACTAT G 0 PASS DP=62;GPV=1;SPV=0.015188;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,5:12,2:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3362 chr22 43878694 . TCCCC T 0 PASS DP=62;GPV=1;SPV=0.036704;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:12,1:12,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3363 chr22 43878699 . G GT 0 PASS DP=62;GPV=1;SPV=0.019962;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:24,5:12,2:12,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3364 chr22 44602533 . C G 0 PASS DP=36;GPV=1;SPV=0.10714;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:1,2:0,0:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3365 chr22 44779100 . T C 0 PASS DP=41;GPV=1;SPV=0.0395;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:20,7:14,4:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3366 chr22 44877039 . G C 0 PASS DP=49;GPV=1;SPV=0.0090442;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:23,14:14,10:9,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3367 chr22 44935632 . A C 0 PASS DP=59;GPV=1;SPV=0.033333;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:34:1,3:0,0:1,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3368 chr22 46290547 . GGTGTTAGGAGGGTGGTGTGGCTGGAGGGTGA G 0 PASS DP=40;GPV=1;SPV=0.040021;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,5:7,4:10,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3369 chr22 46617258 . C T 0 PASS DP=35;GPV=1;SPV=0.020833;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,8:9,5:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3370 chr22 46897640 . G T 0 PASS DP=29;GPV=1;SPV=0.0041229;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,7:4,2:4,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3371 chr22 47076355 . G A 0 PASS DP=50;GPV=1;SPV=0.023031;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:13,7:8,3:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3372 chr22 48341751 . AGACAGAAGGAGCAGGATG A 0 PASS DP=46;GPV=1;SPV=0.10034;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,4:10,2:12,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3373 chr22 49186056 . C T 0 PASS DP=59;GPV=1;SPV=0.0099003;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:28,9:13,2:15,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3374 chr22 49484918 . C G 0 PASS DP=30;GPV=1;SPV=0.049808;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:7,1:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3375 chr22 50002495 . C CT 0 PASS DP=40;GPV=1;SPV=0.012174;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:6,8:2,7:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3376 chr22 50363568 . T G 0 PASS DP=48;GPV=1;SPV=0.00077962;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,9:9,5:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3377 chr3 129852 . T C 0 PASS DP=68;GPV=1;SPV=0.019439;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:16,6:9,5:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3378 chr3 239595 . A ATAT 0 PASS DP=60;GPV=1;SPV=0.026;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:22,10:12,7:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3379 chr3 432797 . G T 0 PASS DP=74;GPV=1;SPV=1.3783e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:24,15:10,6:14,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3380 chr3 576388 . G A 0 PASS DP=90;GPV=1;SPV=0.032698;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:46,6:23,4:23,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3381 chr3 576475 . G A 0 PASS DP=66;GPV=1;SPV=0.04525;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,5:10,3:13,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3382 chr3 576584 . G A 0 PASS DP=78;GPV=1;SPV=0.018117;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:28,11:14,2:14,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3383 chr3 597332 . T C 0 PASS DP=79;GPV=1;SPV=0.01228;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:27,11:11,8:16,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3384 chr3 781920 . T TACACAC 0 PASS DP=22;GPV=1;SPV=0.047472;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:2,1:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3385 chr3 1071316 . CTTTTTTTTTTTTTTTTTTTTTTTT C 0 PASS DP=26;GPV=1;SPV=0.044851;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,8:2,4:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3386 chr3 1880220 . C G 0 PASS DP=45;GPV=1;SPV=0.05832;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:23,6:14,2:9,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3387 chr3 1894838 . C T 0 PASS DP=65;GPV=1;SPV=0.00011755;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:18,19:11,10:7,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3388 chr3 2519469 . C A 0 PASS DP=83;GPV=1;SPV=4.361e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:32,16:17,6:15,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3389 chr3 2632084 . A G 0 PASS DP=50;GPV=1;SPV=0.088906;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:13,2:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3390 chr3 2876362 . T C 0 PASS DP=62;GPV=1;SPV=2.9233e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:21,20:12,11:9,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3391 chr3 3356760 . T TAC 0 PASS DP=35;GPV=1;SPV=0.0035197;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:8,9:7,7:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3392 chr3 5150463 . A AAAGTAAATAAAT 0 PASS DP=46;GPV=1;SPV=0.0044074;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,9:10,4:7,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3393 chr3 6196996 . CA C 0 PASS DP=35;GPV=1;SPV=0.0072217;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,8:5,6:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3394 chr3 6443726 . A T 0 PASS DP=67;GPV=1;SPV=0.33333;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:4,2:2,1:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3395 chr3 6462261 . T C 0 PASS DP=53;GPV=1;SPV=0.1228;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:13,3:15,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3396 chr3 6935679 . T A 0 PASS DP=49;GPV=1;SPV=0.14851;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:12,1:15,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3397 chr3 7456450 . C CT 0 PASS DP=37;GPV=1;SPV=0.036129;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:14,13:6,11:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3398 chr3 8617526 . T TA 0 PASS DP=32;GPV=1;SPV=0.0016314;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,8:6,6:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3399 chr3 9516781 . CTT C 0 PASS DP=38;GPV=1;SPV=0.017149;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:6,10:3,7:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3400 chr3 10128831 . C CT 0 PASS DP=30;GPV=1;SPV=0.0067873;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:3,8:2,7:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3401 chr3 10169014 . A T 0 PASS DP=71;GPV=1;SPV=4.9258e-06;SS=2;SSC=53;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:22,17:13,12:9,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3402 chr3 11564691 . T G 0 PASS DP=60;GPV=1;SPV=0.079729;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:29,6:24,2:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3403 chr3 12044200 . C A 0 PASS DP=65;GPV=1;SPV=0.087004;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:21,1:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3404 chr3 12463229 . C CT 0 PASS DP=22;GPV=1;SPV=0.023079;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:4,5:0,4:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3405 chr3 12518321 . C G 0 PASS DP=56;GPV=1;SPV=0.002188;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,8:9,4:11,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3406 chr3 12533659 . CA C 0 PASS DP=36;GPV=1;SPV=0.021859;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:8,9:4,7:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3407 chr3 12683372 . T TA 0 PASS DP=32;GPV=1;SPV=0.038324;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:9,5:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3408 chr3 13191477 . ATTTT A 0 PASS DP=42;GPV=1;SPV=0.034996;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:14,6:10,4:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3409 chr3 13486288 . AAG A 0 PASS DP=31;GPV=1;SPV=0.19021;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:4,2:13,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3410 chr3 13587158 . A T 0 PASS DP=52;GPV=1;SPV=0.00086916;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,7:7,2:7,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3411 chr3 13992133 . G A 0 PASS DP=74;GPV=1;SPV=0.034948;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:40,7:21,3:19,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3412 chr3 14893752 . C CT 0 PASS DP=27;GPV=1;SPV=0.037681;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,7:3,5:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3413 chr3 15361155 . T A 0 PASS DP=63;GPV=1;SPV=3.3183e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:19,13:11,10:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3414 chr3 15777849 . T TACACAC 0 PASS DP=49;GPV=1;SPV=0.086046;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:18,8:16,4:2,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3415 chr3 17003734 . C A 0 PASS DP=72;GPV=1;SPV=0.01488;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:31,6:8,4:23,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3416 chr3 17082139 . G GTTT 0 PASS DP=26;GPV=1;SPV=0.12846;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,4:8,3:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3417 chr3 18596694 . TA T 0 PASS DP=24;GPV=1;SPV=0.03028;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:4,4:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3418 chr3 18994437 . G A 0 PASS DP=43;GPV=1;SPV=0.049965;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:12,4:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3419 chr3 19094960 . C G 0 PASS DP=63;GPV=1;SPV=0.00020585;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:24,15:10,5:14,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3420 chr3 21552466 . T C 0 PASS DP=63;GPV=1;SPV=0.0060771;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:27,8:14,2:13,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3421 chr3 21699535 . G A 0 PASS DP=70;GPV=1;SPV=0.0010937;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:31,13:18,9:13,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3422 chr3 22905849 . GTATATATA G 0 PASS DP=27;GPV=1;SPV=0.085139;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,4:3,3:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3423 chr3 23614802 . ATT A 0 PASS DP=39;GPV=1;SPV=0.059497;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:9,9:5,3:4,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3424 chr3 26948136 . A G 0 PASS DP=69;GPV=1;SPV=5.9786e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:23,13:13,9:10,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3425 chr3 27803357 . A AATTTATTTATTT 0 PASS DP=54;GPV=1;SPV=0.075102;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:13,2:12,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3426 chr3 27823721 . C CTTTTTTTTT 0 PASS DP=52;GPV=1;SPV=0.013574;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,9:8,7:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3427 chr3 28489982 . A G 0 PASS DP=71;GPV=1;SPV=6.5178e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:23,12:13,9:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3428 chr3 28990677 . C CT 0 PASS DP=25;GPV=1;SPV=0.033054;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,7:5,6:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3429 chr3 29763609 . A C 0 PASS DP=61;GPV=1;SPV=3.4451e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:15,14:9,4:6,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3430 chr3 30032018 . G A 0 PASS DP=72;GPV=1;SPV=0.0015169;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:26,8:14,5:12,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3431 chr3 30255749 . G A 0 PASS DP=62;GPV=1;SPV=0.006961;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:27,8:16,3:11,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3432 chr3 30950443 . TA T 0 PASS DP=31;GPV=1;SPV=0.097251;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:10,3:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3433 chr3 31663450 . A T 0 PASS DP=85;GPV=1;SPV=4.2446e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:29,18:16,10:13,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3434 chr3 32538625 . T A 0 PASS DP=55;GPV=1;SPV=0.00045655;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:19,11:11,6:8,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3435 chr3 32806445 . AT A 0 PASS DP=40;GPV=1;SPV=0.012101;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:14,12:9,3:5,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3436 chr3 33740789 . C CT 0 PASS DP=33;GPV=1;SPV=0.046518;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,7:4,6:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3437 chr3 33852925 . C T 0 PASS DP=50;GPV=1;SPV=0.10021;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:13,4:9,3:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3438 chr3 34704588 . G GAT 0 PASS DP=21;GPV=1;SPV=0.023839;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,6:0,2:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3439 chr3 35417627 . G A 0 PASS DP=64;GPV=1;SPV=7.0259e-06;SS=2;SSC=51;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:20,20:8,9:12,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3440 chr3 35554528 . C CTT 0 PASS DP=36;GPV=1;SPV=0.043842;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:7,4:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3441 chr3 36780910 . G GGATAGATAGATA 0 PASS DP=52;GPV=1;SPV=0.040384;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:9,9:4,6:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3442 chr3 37101683 . AAG A 0 PASS DP=63;GPV=1;SPV=0.044908;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:32,6:18,4:14,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3443 chr3 39585526 . C T 0 PASS DP=47;GPV=1;SPV=0.028303;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:24,9:9,4:15,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3444 chr3 39678572 . C T 0 PASS DP=46;GPV=1;SPV=0.18447;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:9,4:4,1:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3445 chr3 40281294 . A T 0 PASS DP=39;GPV=1;SPV=0.14286;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:1,2:0,1:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3446 chr3 40787632 . A G 0 PASS DP=73;GPV=1;SPV=4.3618e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:26,15:13,9:13,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3447 chr3 45247058 . A AATTTTATTTTATTTTATTTTATTTT 0 PASS DP=34;GPV=1;SPV=0.088889;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,4:4,3:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3448 chr3 50008546 . CT C 0 PASS DP=23;GPV=1;SPV=0.089245;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:8,3:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3449 chr3 51402566 . A ATTTT 0 PASS DP=31;GPV=1;SPV=0.20158;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,5:8,2:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3450 chr3 51543608 . CA C 0 PASS DP=28;GPV=1;SPV=0.066403;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,5:10,3:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3451 chr3 51793343 . CT C 0 PASS DP=38;GPV=1;SPV=0.019656;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,6:8,5:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3452 chr3 52577430 . CAAAA C 0 PASS DP=34;GPV=1;SPV=0.16643;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,4:15,2:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3453 chr3 52945162 . A G 0 PASS DP=32;GPV=1;SPV=0.034547;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,7:5,4:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3454 chr3 52994688 . T A 0 PASS DP=62;GPV=1;SPV=6.8987e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:20,13:10,9:10,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3455 chr3 54500519 . T A 0 PASS DP=47;GPV=1;SPV=0.092902;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,5:10,1:15,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3456 chr3 54793094 . T G 0 PASS DP=65;GPV=1;SPV=0.0022088;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:26,9:10,4:16,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3457 chr3 57037876 . A AAAAAC 0 PASS DP=52;GPV=1;SPV=0.009628;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:10,13:2,7:8,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3458 chr3 57531767 . CA C 0 PASS DP=26;GPV=1;SPV=0.045217;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,6:5,5:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3459 chr3 60173917 . GT G 0 PASS DP=27;GPV=1;SPV=0.059497;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,5:3,2:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3460 chr3 60206148 . T A 0 PASS DP=46;GPV=1;SPV=0.12905;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,4:9,3:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3461 chr3 60710074 . T TA 0 PASS DP=33;GPV=1;SPV=0.0083519;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,9:2,7:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3462 chr3 62418487 . A AT 0 PASS DP=30;GPV=1;SPV=0.12566;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,6:10,4:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3463 chr3 62525679 . A ATGTGTGTGTGTGTGTGTG 0 PASS DP=45;GPV=1;SPV=0.20188;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:14,2:12,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3464 chr3 62701621 . AAG A 0 PASS DP=55;GPV=1;SPV=0.020482;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:24,6:18,1:6,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3465 chr3 64600051 . CTTT C 0 PASS DP=30;GPV=1;SPV=0.037461;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:5,8:4,5:1,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3466 chr3 65044104 . C T 0 PASS DP=34;GPV=1;SPV=0.027972;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:3,6:1,1:2,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3467 chr3 65364165 . T TA 0 PASS DP=21;GPV=1;SPV=0.024887;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:4,7:0,4:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3468 chr3 65514429 . C G 0 PASS DP=46;GPV=1;SPV=0.19282;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:11,1:16,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3469 chr3 66032377 . A ATT 0 PASS DP=50;GPV=1;SPV=0.045714;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:25,7:16,2:9,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3470 chr3 66144373 . C T 0 PASS DP=63;GPV=1;SPV=2.7598e-06;SS=2;SSC=55;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,10:3,5:8,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3471 chr3 66613115 . C CTTTCTTTCTTTCTTT 0 PASS DP=34;GPV=1;SPV=0.29371;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:6,4:1,1:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3472 chr3 66874098 . T C 0 PASS DP=36;GPV=1;SPV=0.21475;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:14,2:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3473 chr3 67792404 . C CAGAG 0 PASS DP=37;GPV=1;SPV=0.040348;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,6:12,4:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3474 chr3 68231344 . A ATTT 0 PASS DP=28;GPV=1;SPV=0.01971;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,8:6,7:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3475 chr3 69018362 . AC A 0 PASS DP=25;GPV=1;SPV=0.010989;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:1,10:0,1:1,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3476 chr3 69163847 . C G 0 PASS DP=64;GPV=1;SPV=4.8478e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:21,14:10,6:11,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3477 chr3 70882485 . G T 0 PASS DP=87;GPV=1;SPV=0.00023389;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:40,18:16,11:24,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3478 chr3 71503601 . G GAA 0 PASS DP=26;GPV=1;SPV=0.094203;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,4:10,3:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3479 chr3 72339949 . T G 0 PASS DP=31;GPV=1;SPV=0.009581;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:11,12:7,9:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3480 chr3 73139131 . G GT 0 PASS DP=38;GPV=1;SPV=0.091949;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:11,6:6,5:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3481 chr3 73350465 . T TGTGC 0 PASS DP=60;GPV=1;SPV=0.073744;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:10,2:18,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3482 chr3 73439820 . C A 0 PASS DP=62;GPV=1;SPV=6.8069e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:18,11:15,8:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3483 chr3 74949227 . G T 0 PASS DP=63;GPV=1;SPV=3.8091e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:22,20:12,13:10,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3484 chr3 75288669 . GCTCCCT G 0 PASS DP=66;GPV=1;SPV=0.002963;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:27,15:17,11:10,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3485 chr3 75927976 . CTTTTT C 0 PASS DP=31;GPV=1;SPV=0.010143;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,8:4,6:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3486 chr3 76065829 . T C 0 PASS DP=57;GPV=1;SPV=0.020961;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:26,13:14,8:12,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3487 chr3 76555417 . GA G 0 PASS DP=27;GPV=1;SPV=0.011966;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,4:3,3:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3488 chr3 76667693 . GCAGTGATCAGACTTTTT G 0 PASS DP=46;GPV=1;SPV=0.049216;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,8:5,4:11,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3489 chr3 78238121 . G C 0 PASS DP=43;GPV=1;SPV=0.37283;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:19,4:16,3:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3490 chr3 78238133 . A AGAAAG 0 PASS DP=43;GPV=1;SPV=0.11425;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:21,5:18,4:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3491 chr3 78718782 . AGAAG A 0 PASS DP=27;GPV=1;SPV=0.047826;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,6:5,5:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3492 chr3 79534148 . CA C 0 PASS DP=28;GPV=1;SPV=0.25926;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:13,3:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3493 chr3 81199034 . G A 0 PASS DP=65;GPV=1;SPV=1.3425e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:19,14:8,10:11,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3494 chr3 81230327 . G A 0 PASS DP=80;GPV=1;SPV=9.7028e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:33,17:12,7:21,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3495 chr3 82916427 . C A 0 PASS DP=40;GPV=1;SPV=0.12269;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:12,1:10,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3496 chr3 82916515 . ATG A 0 PASS DP=47;GPV=1;SPV=0.068571;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:25,6:14,2:11,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3497 chr3 83264013 . A C 0 PASS DP=25;GPV=1;SPV=0.011899;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,8:5,4:3,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3498 chr3 83343566 . A AAAAT 0 PASS DP=74;GPV=1;SPV=0.0015778;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:28,21:11,12:17,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3499 chr3 83802912 . C G 0 PASS DP=57;GPV=1;SPV=0.0026191;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:25,12:13,8:12,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3500 chr3 84459753 . A ATATAATATACTAATT 0 PASS DP=40;GPV=1;SPV=0.027999;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,8:6,2:8,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3501 chr3 84498434 . AT A 0 PASS DP=51;GPV=1;SPV=0.0026945;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:18,16:11,9:7,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3502 chr3 84907634 . C T 0 PASS DP=40;GPV=1;SPV=0.10784;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:7,4:6,2:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3503 chr3 85134029 . T A 0 PASS DP=94;GPV=1;SPV=3.774e-07;SS=2;SSC=64;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:32,23:13,14:19,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3504 chr3 85269762 . G C 0 PASS DP=70;GPV=1;SPV=1.9644e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:22,14:8,6:14,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3505 chr3 86385093 . A T 0 PASS DP=65;GPV=1;SPV=0.010747;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:21,9:12,4:9,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3506 chr3 87653922 . A G 0 PASS DP=42;GPV=1;SPV=0.01246;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:10,7:6,4:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3507 chr3 87905735 . C CA 0 PASS DP=60;GPV=1;SPV=0.038531;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:25,12:15,9:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3508 chr3 88457695 . C CAAAAT 0 PASS DP=41;GPV=1;SPV=0.01558;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:14,11:7,5:7,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3509 chr3 88494803 . G T 0 PASS DP=72;GPV=1;SPV=0.024567;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:34,6:18,5:16,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3510 chr3 89001840 . T A 0 PASS DP=47;GPV=1;SPV=0.048406;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,8:4,4:16,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3511 chr3 90720510 . A C 0 PASS DP=28;GPV=1;SPV=0.14945;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:0,0:14,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3512 chr3 90849704 . T C 0 PASS DP=174;GPV=1;SPV=0.00096455;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:95:80,14:32,2:48,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3513 chr3 90885770 . G A 0 PASS DP=25;GPV=1;SPV=0.020229;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,7:2,4:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3514 chr3 90889498 . A T 0 PASS DP=199;GPV=1;SPV=0.017728;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:114:87,18:24,6:63,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3515 chr3 90921450 . C A 0 PASS DP=395;GPV=1;SPV=0.010297;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:232:204,28:109,17:95,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3516 chr3 90934900 . C G 0 PASS DP=35;GPV=1;SPV=0.20294;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:0,0:20,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3517 chr3 90939815 . C G 0 PASS DP=70;GPV=1;SPV=0.047994;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:33,8:20,6:13,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3518 chr3 90952757 . C T 0 PASS DP=20;GPV=1;SPV=0.068111;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:6,1:1,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3519 chr3 90956374 . G C 0 PASS DP=17;GPV=1;SPV=0.20588;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:0,0:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3520 chr3 90997507 . A G 0 PASS DP=23;GPV=1;SPV=0.15415;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:3,3:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3521 chr3 91022377 . C G 0 PASS DP=276;GPV=1;SPV=0.013225;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:164:145,19:41,12:104,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3522 chr3 91031691 . T C 0 PASS DP=88;GPV=1;SPV=0.022644;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:42,6:19,4:23,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3523 chr3 91032152 . T G 0 PASS DP=49;GPV=1;SPV=0.10034;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:22,4:0,0:22,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3524 chr3 91092531 . G T 0 PASS DP=45;GPV=1;SPV=0.11779;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:21,1:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3525 chr3 91141801 . G A 0 PASS DP=104;GPV=1;SPV=0.023151;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:62:55,7:0,1:55,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3526 chr3 91192149 . A C 0 PASS DP=427;GPV=1;SPV=0.014922;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:240:210,30:162,19:48,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3527 chr3 91206664 . G C 0 PASS DP=50;GPV=1;SPV=0.088906;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:23,4:1,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3528 chr3 91278261 . G T 0 PASS DP=60;GPV=1;SPV=0.16867;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:19,3:16,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3529 chr3 91278660 . T A 0 PASS DP=78;GPV=1;SPV=0.090326;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:44,5:25,3:19,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3530 chr3 91676678 . T G 0 PASS DP=22;GPV=1;SPV=0.097744;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:0,0:9,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3531 chr3 91988313 . C T 0 PASS DP=140;GPV=1;SPV=0.028456;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:69:62,7:28,6:34,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3532 chr3 92379478 . C G 0 PASS DP=35;GPV=1;SPV=0.058442;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:14,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3533 chr3 93463936 . A G 0 PASS DP=18;GPV=1;SPV=0.068627;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,4:0,1:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3534 chr3 93559616 . T G 0 PASS DP=44;GPV=1;SPV=0.078276;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:0,0:20,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3535 chr3 93706202 . G A 0 PASS DP=27;GPV=1;SPV=0.22085;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:13,3:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3536 chr3 94379241 . C CTGTGTGTG 0 PASS DP=33;GPV=1;SPV=0.018593;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:8,7:3,3:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3537 chr3 96311792 . A AGTGTGTGTGTGTGTGTGT 0 PASS DP=45;GPV=1;SPV=0.043618;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,7:5,6:11,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3538 chr3 97483214 . C T 0 PASS DP=70;GPV=1;SPV=0.00033054;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:24,10:14,3:10,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3539 chr3 97539042 . T G 0 PASS DP=48;GPV=1;SPV=0.047147;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:7,2:15,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3540 chr3 97674296 . T A 0 PASS DP=63;GPV=1;SPV=1.9702e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:18,13:10,6:8,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3541 chr3 97815678 . CTT C 0 PASS DP=27;GPV=1;SPV=0.031121;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,9:5,3:3,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3542 chr3 98839159 . CTT C 0 PASS DP=41;GPV=1;SPV=0.039387;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,6:5,1:14,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3543 chr3 99509106 . A T 0 PASS DP=67;GPV=1;SPV=0.087777;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:21,5:7,3:14,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3544 chr3 99626435 . C CTT 0 PASS DP=33;GPV=1;SPV=0.028638;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:4,9:4,8:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3545 chr3 101133802 . T A 0 PASS DP=59;GPV=1;SPV=4.6357e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:17,12:5,6:12,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3546 chr3 101136760 . G A 0 PASS DP=64;GPV=1;SPV=0.0016781;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:26,10:14,4:12,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3547 chr3 101160399 . C CGTGT 0 PASS DP=50;GPV=1;SPV=0.064856;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:15,9:9,8:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3548 chr3 101596725 . TA T 0 PASS DP=40;GPV=1;SPV=0.1538;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:9,1:12,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3549 chr3 102382738 . A C 0 PASS DP=65;GPV=1;SPV=0.046286;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:36,7:20,4:16,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3550 chr3 104602297 . T G 0 PASS DP=79;GPV=1;SPV=0.0023706;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:38,12:19,4:19,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3551 chr3 104938687 . A G 0 PASS DP=45;GPV=1;SPV=0.29371;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:6,4:3,3:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3552 chr3 105370946 . C T 0 PASS DP=74;GPV=1;SPV=4.5693e-07;SS=2;SSC=63;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:21,20:8,9:13,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3553 chr3 105404675 . G GA 0 PASS DP=50;GPV=1;SPV=0.0027601;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:14,14:12,8:2,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3554 chr3 106109796 . CTT C 0 PASS DP=34;GPV=1;SPV=0.041789;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:1,2:13,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3555 chr3 106512578 . C T 0 PASS DP=39;GPV=1;SPV=0.10008;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,6:8,5:10,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3556 chr3 109286729 . A T 0 PASS DP=70;GPV=1;SPV=3.4643e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:26,20:14,9:12,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3557 chr3 109575163 . T TATA 0 PASS DP=43;GPV=1;SPV=0.071818;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:22,6:9,2:13,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3558 chr3 109730340 . C CAGAGAGAGAGAGAG 0 PASS DP=44;GPV=1;SPV=0.042236;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:9,10:5,6:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3559 chr3 109789964 . C A 0 PASS DP=21;GPV=1;SPV=0.18301;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,2:3,1:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3560 chr3 110068619 . G C 0 PASS DP=72;GPV=1;SPV=0.047029;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:35,5:22,4:13,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3561 chr3 110505831 . C T 0 PASS DP=25;GPV=1;SPV=0.15415;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,4:7,1:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3562 chr3 110884738 . G C 0 PASS DP=55;GPV=1;SPV=0.060034;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:9,2:15,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3563 chr3 111007974 . T TATGTATATATAC 0 PASS DP=53;GPV=1;SPV=0.048554;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:21,6:12,4:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3564 chr3 112051652 . CT C 0 PASS DP=56;GPV=1;SPV=0.021517;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:29,9:16,3:13,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3565 chr3 112199388 . G A 0 PASS DP=72;GPV=1;SPV=5.4898e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:26,15:15,8:11,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3566 chr3 113119174 . CTTTTTTT C 0 PASS DP=29;GPV=1;SPV=0.028284;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:7,11:4,7:3,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3567 chr3 113156313 . G C 0 PASS DP=63;GPV=1;SPV=0.0052563;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:28,9:13,3:15,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3568 chr3 113172202 . T G 0 PASS DP=61;GPV=1;SPV=0.12656;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:13,2:20,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3569 chr3 113191188 . G A 0 PASS DP=66;GPV=1;SPV=1.144e-05;SS=2;SSC=49;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:21,17:8,7:13,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3570 chr3 113856547 . T G 0 PASS DP=56;GPV=1;SPV=0.085668;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:16,3:11,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3571 chr3 114362265 . C T 0 PASS DP=58;GPV=1;SPV=0.00067377;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:17,21:6,14:11,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3572 chr3 115169556 . G T 0 PASS DP=77;GPV=1;SPV=3.0482e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:28,16:11,12:17,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3573 chr3 115325729 . A T 0 PASS DP=70;GPV=1;SPV=0.00059303;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:24,9:16,5:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3574 chr3 115325730 . G A 0 PASS DP=73;GPV=1;SPV=0.00056062;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:27,10:18,6:9,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3575 chr3 116100206 . T C 0 PASS DP=40;GPV=1;SPV=0.023137;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:15,14:12,10:3,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3576 chr3 116160415 . A G 0 PASS DP=36;GPV=1;SPV=0.065801;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:15,3:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3577 chr3 116701070 . A C 0 PASS DP=63;GPV=1;SPV=0.0010146;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:26,12:16,8:10,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3578 chr3 118512217 . A C 0 PASS DP=42;GPV=1;SPV=0.043889;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,6:11,3:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3579 chr3 118601804 . A T 0 PASS DP=29;GPV=1;SPV=0.002981;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:6,11:4,8:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3580 chr3 118633883 . T A 0 PASS DP=40;GPV=1;SPV=0.21212;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:4,4:3,3:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3581 chr3 121228569 . T G 0 PASS DP=86;GPV=1;SPV=0.011158;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:36,6:23,5:13,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3582 chr3 121764195 . A AACACACACAC 0 PASS DP=53;GPV=1;SPV=0.022955;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:20,12:11,7:9,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3583 chr3 123427220 . C T 0 PASS DP=78;GPV=1;SPV=4.2086e-06;SS=2;SSC=53;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:21,13:10,5:11,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3584 chr3 125256967 . GTTT G 0 PASS DP=30;GPV=1;SPV=0.023788;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:9,12:7,9:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3585 chr3 126059282 . G GA 0 PASS DP=37;GPV=1;SPV=0.057896;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,6:10,3:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3586 chr3 129709499 . G A 0 PASS DP=25;GPV=1;SPV=0.10791;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:6,2:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3587 chr3 130095408 . G T 0 PASS DP=52;GPV=1;SPV=0.10147;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:22,7:14,2:8,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3588 chr3 130125033 . TG T 0 PASS DP=26;GPV=1;SPV=0.021739;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:4,1:5,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3589 chr3 130302003 . C G 0 PASS DP=66;GPV=1;SPV=3.2211e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:18,11:8,5:10,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3590 chr3 132763487 . T C 0 PASS DP=75;GPV=1;SPV=0.069447;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:43,6:13,5:30,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3591 chr3 132798951 . A G 0 PASS DP=61;GPV=1;SPV=0.023599;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:30,7:13,3:17,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3592 chr3 134051500 . TTTCTTTCTTTCTTTC T 0 PASS DP=25;GPV=1;SPV=0.040458;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:3,5:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3593 chr3 135026064 . G A 0 PASS DP=59;GPV=1;SPV=0.18072;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:26,3:9,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3594 chr3 135640369 . T TGATA 0 PASS DP=50;GPV=1;SPV=0.029113;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,10:11,4:7,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3595 chr3 136498284 . T C 0 PASS DP=27;GPV=1;SPV=0.12846;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,4:3,2:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3596 chr3 136867108 . CTTTCTTTCTTTG C 0 PASS DP=21;GPV=1;SPV=0.23077;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:5,2:0,0:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3597 chr3 138339643 . G C 0 PASS DP=63;GPV=1;SPV=0.00013297;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:21,12:15,8:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3598 chr3 139047330 . C A 0 PASS DP=59;GPV=1;SPV=1.0935e-05;SS=2;SSC=49;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:16,14:4,7:12,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3599 chr3 141004091 . CTG C 0 PASS DP=38;GPV=1;SPV=0.023031;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:14,8:7,2:7,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3600 chr3 141644602 . C A 0 PASS DP=69;GPV=1;SPV=0.0013259;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:32,15:17,8:15,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3601 chr3 141902597 . A C 0 PASS DP=77;GPV=1;SPV=0.00010642;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:27,12:20,6:7,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3602 chr3 141932460 . AT A 0 PASS DP=32;GPV=1;SPV=0.038324;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:5,5:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3603 chr3 142805133 . C T 0 PASS DP=50;GPV=1;SPV=0.50909;SS=2;SSC=2;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:6,2:4,1:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3604 chr3 144563278 . T TTA 0 PASS DP=33;GPV=1;SPV=0.039921;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,7:10,3:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3605 chr3 145215163 . TC T 0 PASS DP=59;GPV=1;SPV=1.5528e-05;SS=2;SSC=48;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:15,12:5,4:10,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3606 chr3 145665509 . T A 0 PASS DP=68;GPV=1;SPV=0.0086108;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:29,7:18,3:11,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3607 chr3 145898362 . C CT 0 PASS DP=42;GPV=1;SPV=0.0096876;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:14,11:8,8:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3608 chr3 145930969 . A C 0 PASS DP=35;GPV=1;SPV=0.011574;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,9:6,5:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3609 chr3 146212460 . T C 0 PASS DP=65;GPV=1;SPV=0.040478;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:16,1:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3610 chr3 147546917 . A AAAATAAAT 0 PASS DP=49;GPV=1;SPV=0.022996;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:24,9:14,4:10,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3611 chr3 148857063 . T TTTTTTTG 0 PASS DP=29;GPV=1;SPV=0.046962;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:3,1:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3612 chr3 149440328 . CTATA C 0 PASS DP=28;GPV=1;SPV=0.066667;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:0,2:0,0:0,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3613 chr3 150193142 . GTT G 0 PASS DP=25;GPV=1;SPV=0.053922;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,5:3,2:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3614 chr3 150560608 . G A 0 PASS DP=73;GPV=1;SPV=6.785e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:27,15:13,7:14,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3615 chr3 151746365 . G GT 0 PASS DP=37;GPV=1;SPV=0.011528;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,7:8,6:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3616 chr3 152770926 . A ATGTGTGTGTGTG 0 PASS DP=28;GPV=1;SPV=0.13561;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:6,3:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3617 chr3 153128424 . C G 0 PASS DP=69;GPV=1;SPV=0.0001119;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:26,15:13,9:13,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3618 chr3 153999306 . A G 0 PASS DP=67;GPV=1;SPV=0.060505;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:17,1:13,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3619 chr3 160036090 . G A 0 PASS DP=70;GPV=1;SPV=0.00026073;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:29,16:19,5:10,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3620 chr3 160970447 . A T 0 PASS DP=33;GPV=1;SPV=0.1184;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:7,3:9,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3621 chr3 161908409 . CAAA C 0 PASS DP=29;GPV=1;SPV=0.016624;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:5,8:2,5:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3622 chr3 163459100 . C CT 0 PASS DP=43;GPV=1;SPV=0.0033421;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:15,11:5,5:10,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3623 chr3 163494555 . C CCACTT 0 PASS DP=63;GPV=1;SPV=0.00034031;SS=2;SSC=34;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:24,13:16,7:8,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3624 chr3 163494556 . T A 0 PASS DP=68;GPV=1;SPV=1.5869e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:23,18:16,8:7,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3625 chr3 163635704 . T C 0 PASS DP=43;GPV=1;SPV=0.055194;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:5,1:15,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3626 chr3 164537161 . T TATATAC 0 PASS DP=38;GPV=1;SPV=0.0030303;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:0,7:0,3:0,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3627 chr3 165048586 . G T 0 PASS DP=45;GPV=1;SPV=0.018088;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:9,8:7,4:2,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3628 chr3 165585878 . T C 0 PASS DP=43;GPV=1;SPV=0.022983;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:17,11:12,2:5,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3629 chr3 165585879 . T C 0 PASS DP=42;GPV=1;SPV=0.0027511;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:16,12:11,3:5,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3630 chr3 166285691 . C CAT 0 PASS DP=36;GPV=1;SPV=0.08112;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,5:10,4:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3631 chr3 167575608 . C A 0 PASS DP=61;GPV=1;SPV=0.00082104;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:26,16:9,13:17,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3632 chr3 170404145 . ATTT A 0 PASS DP=31;GPV=1;SPV=0.016999;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:7,6:4,1:3,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3633 chr3 171971062 . C T 0 PASS DP=17;GPV=1;SPV=0.06993;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:3,3:1,2:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3634 chr3 172737350 . A ATTTT 0 PASS DP=23;GPV=1;SPV=0.080745;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:4,2:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3635 chr3 172778588 . CT C 0 PASS DP=24;GPV=1;SPV=0.048055;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,5:2,3:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3636 chr3 173830245 . A T 0 PASS DP=53;GPV=1;SPV=0.00016645;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:14,24:6,9:8,15
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3637 chr3 174107017 . C G 0 PASS DP=42;GPV=1;SPV=0.041789;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,5:8,1:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3638 chr3 176384810 . A T 0 PASS DP=57;GPV=1;SPV=0.14912;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:15,2:17,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3639 chr3 177263053 . CTT C 0 PASS DP=44;GPV=1;SPV=0.020164;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,10:11,7:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3640 chr3 179743926 . G GT 0 PASS DP=46;GPV=1;SPV=0.029748;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:8,9:4,8:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3641 chr3 179797605 . A T 0 PASS DP=44;GPV=1;SPV=0.19094;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,4:5,1:14,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3642 chr3 181751957 . G A 0 PASS DP=31;GPV=1;SPV=0.21212;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:4,3:0,1:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3643 chr3 182645608 . ATTT A 0 PASS DP=31;GPV=1;SPV=0.0061246;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:6,8:5,3:1,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3644 chr3 183531448 . T TTTTTG 0 PASS DP=29;GPV=1;SPV=0.026054;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:6,2:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3645 chr3 183778111 . C CA 0 PASS DP=33;GPV=1;SPV=0.060124;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,5:5,2:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3646 chr3 185077789 . T TG 0 PASS DP=25;GPV=1;SPV=0.035714;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:2,9:1,7:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3647 chr3 185567814 . A C 0 PASS DP=140;GPV=1;SPV=0.039734;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:73:52,11:28,5:24,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3648 chr3 185588050 . A ATTT 0 PASS DP=20;GPV=1;SPV=0.068111;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,5:3,2:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3649 chr3 186776847 . G GT 0 PASS DP=44;GPV=1;SPV=0.017733;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:17,11:13,9:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3650 chr3 186864128 . G C 0 PASS DP=35;GPV=1;SPV=0.044511;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,8:2,2:11,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3651 chr3 187892231 . T A 0 PASS DP=56;GPV=1;SPV=0.010015;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,10:9,4:9,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3652 chr3 187892273 . TTGGATA T 0 PASS DP=49;GPV=1;SPV=0.002317;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:13,12:4,4:9,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3653 chr3 188142604 . G A 0 PASS DP=20;GPV=1;SPV=0.052941;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,4:2,3:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3654 chr3 188936019 . C CTT 0 PASS DP=35;GPV=1;SPV=0.07313;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,5:9,4:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3655 chr3 189742243 . CAAAAA C 0 PASS DP=42;GPV=1;SPV=0.027077;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:10,11:5,7:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3656 chr3 190748294 . T C 0 PASS DP=66;GPV=1;SPV=0.049488;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:35,6:14,4:21,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3657 chr3 191259852 . C CT 0 PASS DP=34;GPV=1;SPV=0.17876;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,4:10,2:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3658 chr3 192086733 . T G 0 PASS DP=77;GPV=1;SPV=0.00030989;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:33,15:16,7:17,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3659 chr3 192818078 . C G 0 PASS DP=68;GPV=1;SPV=9.067e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:25,15:15,8:10,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3660 chr3 194325045 . CT C 0 PASS DP=52;GPV=1;SPV=0.18371;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:27,3:14,2:13,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3661 chr3 194673961 . ACCTTAC A 0 PASS DP=58;GPV=1;SPV=0.10931;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:16,1:14,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3662 chr3 194680228 . G C 0 PASS DP=59;GPV=1;SPV=0.0026031;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:20,7:8,4:12,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3663 chr3 195480294 . T A 0 PASS DP=183;GPV=1;SPV=0.015268;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:96:85,11:37,6:48,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3664 chr3 195482428 . G C 0 PASS DP=48;GPV=1;SPV=0.10523;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:5,2:19,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3665 chr3 195489285 . G A 0 PASS DP=88;GPV=1;SPV=0.024281;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:46,7:23,3:23,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3666 chr3 195499352 . C T 0 PASS DP=106;GPV=1;SPV=0.0032428;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:49,9:24,6:25,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3667 chr3 195500853 . A T 0 PASS DP=162;GPV=1;SPV=0.038044;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:78:70,8:36,3:34,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3668 chr3 195619095 . G A 0 PASS DP=84;GPV=1;SPV=0.009035;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:34,17:15,14:19,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3669 chr3 195627434 . T TCCACTGAA 0 PASS DP=84;GPV=1;SPV=0.0066776;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:35,15:18,7:17,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3670 chr3 195637214 . GGT G 0 PASS DP=132;GPV=1;SPV=0.0050154;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:75:63,12:22,8:41,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3671 chr3 195960350 . A G 0 PASS DP=122;GPV=1;SPV=0.00044669;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:71:49,22:19,3:30,19
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3672 chr3 195962048 . G T 0 PASS DP=23;GPV=1;SPV=0.11304;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:5,3:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3673 chr3 195966515 . C A 0 PASS DP=78;GPV=1;SPV=0.057873;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:40,5:23,1:17,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3674 chr3 196173255 . T C 0 PASS DP=47;GPV=1;SPV=0.021053;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,8:12,2:2,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3675 chr3 197658326 . G A 0 PASS DP=53;GPV=1;SPV=0.033605;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:22,8:9,7:13,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3676 chr4 11120 . C A 0 PASS DP=20;GPV=1;SPV=0.023839;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,6:4,3:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3677 chr4 11422 . G A 0 PASS DP=47;GPV=1;SPV=0.013049;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:15,11:9,4:6,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3678 chr4 26921 . T A 0 PASS DP=66;GPV=1;SPV=0.11412;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:32,4:3,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3679 chr4 37547 . AG A 0 PASS DP=305;GPV=1;SPV=0.036501;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:170:152,18:68,7:84,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3680 chr4 60317 . G A 0 PASS DP=313;GPV=1;SPV=0.030421;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:205:184,21:93,13:91,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3681 chr4 64786 . T G 0 PASS DP=323;GPV=1;SPV=0.0090726;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:197:171,26:90,15:81,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3682 chr4 1152938 . C CTT 0 PASS DP=26;GPV=1;SPV=0.017028;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:5,8:2,5:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3683 chr4 1266472 . C G 0 PASS DP=52;GPV=1;SPV=0.0003248;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:18,13:4,8:14,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3684 chr4 1680330 . A C 0 PASS DP=36;GPV=1;SPV=0.01393;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,7:10,4:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3685 chr4 1786308 . C T 0 PASS DP=85;GPV=1;SPV=3.3703e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:27,16:12,5:15,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3686 chr4 2020796 . T TC 0 PASS DP=51;GPV=1;SPV=0.074501;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:14,8:1,4:13,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3687 chr4 2205874 . CA C 0 PASS DP=40;GPV=1;SPV=0.035509;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:16,13:10,8:6,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3688 chr4 2618591 . C CT 0 PASS DP=37;GPV=1;SPV=0.0011112;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:6,6:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3689 chr4 4253875 . A G 0 PASS DP=29;GPV=1;SPV=0.02039;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:8,5:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3690 chr4 4294877 . G A 0 PASS DP=54;GPV=1;SPV=0.040114;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,6:12,1:8,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3691 chr4 4677535 . A C 0 PASS DP=34;GPV=1;SPV=0.34286;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:7,2:4,1:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3692 chr4 4697798 . C CCTATCTAT 0 PASS DP=59;GPV=1;SPV=0.044564;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:27,9:12,3:15,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3693 chr4 6003949 . A ATGG 0 PASS DP=42;GPV=1;SPV=0.028921;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,6:7,5:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3694 chr4 6694969 . T C 0 PASS DP=54;GPV=1;SPV=0.41667;SS=2;SSC=3;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:4,2:2,1:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3695 chr4 8322525 . A T 0 PASS DP=66;GPV=1;SPV=0.0011349;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:28,12:15,4:13,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3696 chr4 8336314 . A C 0 PASS DP=62;GPV=1;SPV=0.10714;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:1,2:1,1:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3697 chr4 8348798 . TAAATAAAATA T 0 PASS DP=45;GPV=1;SPV=0.046124;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:20,13:11,8:9,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3698 chr4 8931584 . C CA 0 PASS DP=33;GPV=1;SPV=0.086845;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,4:10,3:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3699 chr4 9324113 . T C 0 PASS DP=469;GPV=1;SPV=0.027626;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:310:277,33:267,32:10,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3700 chr4 9524302 . CTAGATACAGAGTGCCGACTGGTG C 0 PASS DP=72;GPV=1;SPV=0.0014616;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:28,9:12,7:16,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3701 chr4 9634595 . CAAAAAAA C 0 PASS DP=30;GPV=1;SPV=0.036896;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:10,10:7,8:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3702 chr4 9719506 . G C 0 PASS DP=65;GPV=1;SPV=0.0038917;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:28,9:17,4:11,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3703 chr4 10175285 . G C 0 PASS DP=60;GPV=1;SPV=0.00021886;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:22,14:13,5:9,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3704 chr4 11667594 . C CT 0 PASS DP=52;GPV=1;SPV=0.00018263;SS=2;SSC=37;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:12,17:7,8:5,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3705 chr4 11796214 . T C 0 PASS DP=61;GPV=1;SPV=0.039894;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:28,5:15,3:13,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3706 chr4 12715070 . ATT A 0 PASS DP=24;GPV=1;SPV=0.059497;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:2,3:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3707 chr4 14491648 . T TATTTATATATAC 0 PASS DP=51;GPV=1;SPV=0.047515;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,10:9,6:11,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3708 chr4 14813881 . A T 0 PASS DP=69;GPV=1;SPV=0.019687;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:25,12:14,4:11,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3709 chr4 15177559 . G A 0 PASS DP=41;GPV=1;SPV=0.022451;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,6:6,2:11,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3710 chr4 15232096 . T C 0 PASS DP=86;GPV=1;SPV=2.3491e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:31,15:14,7:17,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3711 chr4 16159514 . A G 0 PASS DP=49;GPV=1;SPV=0.0028455;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,10:6,4:9,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3712 chr4 16440716 . TC T 0 PASS DP=50;GPV=1;SPV=0.095044;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:27,5:11,4:16,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3713 chr4 16586509 . C A 0 PASS DP=49;GPV=1;SPV=0.081081;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,4:12,3:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3714 chr4 16819095 . T C 0 PASS DP=55;GPV=1;SPV=0.040165;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:30,8:19,7:11,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3715 chr4 17311735 . C A 0 PASS DP=24;GPV=1;SPV=0.12913;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,5:6,3:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3716 chr4 17569577 . CCACA C 0 PASS DP=49;GPV=1;SPV=0.035087;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,10:5,7:13,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3717 chr4 17742137 . AATATATAT A 0 PASS DP=33;GPV=1;SPV=0.010479;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,9:9,5:3,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3718 chr4 18327173 . C CAAA 0 PASS DP=31;GPV=1;SPV=0.031264;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:8,5:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3719 chr4 19232748 . A G 0 PASS DP=49;GPV=1;SPV=0.07056;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:6,3:16,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3720 chr4 20181645 . C T 0 PASS DP=67;GPV=1;SPV=0.11923;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:36,4:20,3:16,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3721 chr4 20311417 . G A 0 PASS DP=70;GPV=1;SPV=0.0065171;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:31,8:15,3:16,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3722 chr4 21501248 . T A 0 PASS DP=53;GPV=1;SPV=0.0088608;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:12,7:6,4:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3723 chr4 21750776 . G A 0 PASS DP=62;GPV=1;SPV=0.0086866;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:26,7:14,4:12,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3724 chr4 21924243 . C CT 0 PASS DP=30;GPV=1;SPV=0.028638;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:4,9:3,8:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3725 chr4 21928129 . C T 0 PASS DP=51;GPV=1;SPV=0.095042;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:14,3:11,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3726 chr4 22061733 . G GTTT 0 PASS DP=59;GPV=1;SPV=0.0055563;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:20,16:12,14:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3727 chr4 22675296 . T G 0 PASS DP=29;GPV=1;SPV=0.072149;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,5:7,2:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3728 chr4 23042370 . C A 0 PASS DP=74;GPV=1;SPV=0.00018253;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:24,10:12,9:12,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3729 chr4 23381713 . A G 0 PASS DP=51;GPV=1;SPV=0.0011278;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:14,17:9,12:5,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3730 chr4 23623876 . A AAAATAAAT 0 PASS DP=45;GPV=1;SPV=0.048514;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,7:5,3:9,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3731 chr4 24137863 . C T 0 PASS DP=61;GPV=1;SPV=2.6311e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:19,15:10,11:9,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3732 chr4 25581959 . C CAAAA 0 PASS DP=32;GPV=1;SPV=0.043344;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:5,5:4,4:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3733 chr4 25612981 . T TAC 0 PASS DP=34;GPV=1;SPV=0.050612;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,4:8,3:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3734 chr4 26851331 . A G 0 PASS DP=63;GPV=1;SPV=0.0064763;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:24,17:9,4:15,13
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3735 chr4 27571764 . T A 0 PASS DP=59;GPV=1;SPV=0.0016548;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:25,12:15,4:10,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3736 chr4 28055902 . AAAAAAT A 0 PASS DP=56;GPV=1;SPV=0.0082274;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:19,12:12,7:7,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3737 chr4 28055918 . C T 0 PASS DP=51;GPV=1;SPV=0.0045608;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:15,12:10,7:5,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3738 chr4 28221328 . TCTCTA T 0 PASS DP=54;GPV=1;SPV=0.0013843;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,7:8,3:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3739 chr4 28806359 . A T 0 PASS DP=27;GPV=1;SPV=0.030303;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:2,6:2,5:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3740 chr4 29179898 . G T 0 PASS DP=71;GPV=1;SPV=0.002428;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:31,10:17,3:14,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3741 chr4 29531916 . G A 0 PASS DP=26;GPV=1;SPV=0.1592;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:5,2:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3742 chr4 30278649 . A G 0 PASS DP=27;GPV=1;SPV=0.01095;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:9,10:6,6:3,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3743 chr4 32005446 . A ATTATTATTATTATTATTATTAT 0 PASS DP=38;GPV=1;SPV=0.015238;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:9,9:3,3:6,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3744 chr4 32495047 . C CT 0 PASS DP=63;GPV=1;SPV=0.004889;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:30,16:19,7:11,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3745 chr4 32839548 . AT A 0 PASS DP=25;GPV=1;SPV=0.15826;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:11,3:5,1:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3746 chr4 35765386 . C G 0 PASS DP=66;GPV=1;SPV=0.0001695;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:23,12:19,8:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3747 chr4 35937283 . C G 0 PASS DP=58;GPV=1;SPV=0.0013435;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:21,9:9,3:12,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3748 chr4 35979284 . T TA 0 PASS DP=45;GPV=1;SPV=0.0051998;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:10,10:4,8:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3749 chr4 38235026 . G A 0 PASS DP=65;GPV=1;SPV=3.5037e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:19,12:7,9:12,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3750 chr4 38461959 . CAA C 0 PASS DP=33;GPV=1;SPV=0.040398;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,10:8,8:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3751 chr4 39640987 . C CT 0 PASS DP=36;GPV=1;SPV=0.023193;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:10,4:2,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3752 chr4 39664216 . T TGTGTGTGCGCGC 0 PASS DP=64;GPV=1;SPV=0.046332;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:25,12:12,7:13,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3753 chr4 39796168 . C CA 0 PASS DP=31;GPV=1;SPV=0.019985;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:9,10:3,6:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3754 chr4 40660610 . C CA 0 PASS DP=46;GPV=1;SPV=0.0070519;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:15,11:11,8:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3755 chr4 41350247 . C G 0 PASS DP=79;GPV=1;SPV=4.5974e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:30,16:16,7:14,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3756 chr4 41706637 . CTTATTA C 0 PASS DP=36;GPV=1;SPV=0.036896;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:10,9:5,6:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3757 chr4 42436540 . C G 0 PASS DP=64;GPV=1;SPV=0.00048494;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:26,14:8,9:18,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3758 chr4 45024881 . CTA C 0 PASS DP=84;GPV=1;SPV=0.023494;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:33,8:19,3:14,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3759 chr4 47195468 . TA T 0 PASS DP=56;GPV=1;SPV=0.2164;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:19,4:10,3:9,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3760 chr4 48620601 . T G 0 PASS DP=66;GPV=1;SPV=0.00025426;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:24,12:11,8:13,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3761 chr4 49098215 . G A 0 PASS DP=75;GPV=1;SPV=0.045325;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:28,10:11,4:17,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3762 chr4 49143770 . A G 0 PASS DP=81;GPV=1;SPV=0.063808;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:42,5:11,2:31,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3763 chr4 49168402 . G T 0 PASS DP=153;GPV=1;SPV=0.013719;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:89:71,16:27,4:44,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3764 chr4 49174541 . C T 0 PASS DP=105;GPV=1;SPV=0.046363;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:60:48,12:25,5:23,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3765 chr4 49265281 . C T 0 PASS DP=153;GPV=1;SPV=0.038078;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:82:69,13:26,4:43,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3766 chr4 49265909 . C T 0 PASS DP=232;GPV=1;SPV=0.031461;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:121:108,13:67,8:41,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3767 chr4 49266927 . T A 0 PASS DP=207;GPV=1;SPV=0.040817;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:120:107,13:60,7:47,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3768 chr4 49270687 . G T 0 PASS DP=496;GPV=1;SPV=0.035757;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:278:235,43:139,24:96,19
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3769 chr4 49271027 . C T 0 PASS DP=521;GPV=1;SPV=0.0033901;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:299:243,56:113,32:130,24
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3770 chr4 49271076 . C T 0 PASS DP=595;GPV=1;SPV=0.00029602;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:330:275,55:148,32:127,23
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3771 chr4 49490706 . G A 0 PASS DP=518;GPV=1;SPV=0.0013516;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:296:250,46:135,20:115,26
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3772 chr4 49493061 . A AT 0 PASS DP=499;GPV=1;SPV=0.031589;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:261:226,34:93,22:133,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3773 chr4 49513797 . G A 0 PASS DP=4660;GPV=1;SPV=0.036427;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:2603:2324,279:771,89:1553,190
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3774 chr4 49519726 . C T 0 PASS DP=64;GPV=1;SPV=0.015039;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:24,9:16,2:8,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3775 chr4 49523382 . C T 0 PASS DP=144;GPV=1;SPV=0.0050121;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:76:68,8:30,1:38,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3776 chr4 49527051 . C T 0 PASS DP=72;GPV=1;SPV=0.047029;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:35,5:20,2:15,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3777 chr4 49532808 . C G 0 PASS DP=121;GPV=1;SPV=0.015725;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:68:52,16:20,7:32,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3778 chr4 49554084 . C T 0 PASS DP=102;GPV=1;SPV=0.0093787;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:43,9:18,8:25,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3779 chr4 49565377 . A T 0 PASS DP=107;GPV=1;SPV=0.045294;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:42,13:21,5:21,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3780 chr4 49574641 . A G 0 PASS DP=576;GPV=1;SPV=0.0052595;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:308:256,52:139,26:117,26
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3781 chr4 49591857 . T G 0 PASS DP=214;GPV=1;SPV=0.0018119;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:117:91,26:27,15:64,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3782 chr4 49607800 . A AAC 0 PASS DP=146;GPV=1;SPV=0.0018273;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:79:50,13:28,6:22,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3783 chr4 49612039 . T G 0 PASS DP=55;GPV=1;SPV=0.057887;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:27,5:22,4:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3784 chr4 49653269 . G GGGAATGGAAT 0 PASS DP=46;GPV=1;SPV=0.031602;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,6:14,4:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3785 chr4 49731167 . C A 0 PASS DP=364;GPV=1;SPV=0.013365;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:228:204,24:149,21:55,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3786 chr4 49787442 . T A 0 PASS DP=93;GPV=1;SPV=0.040768;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:45,5:7,1:38,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3787 chr4 49792264 . C G 0 PASS DP=49;GPV=1;SPV=0.1121;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:23,4:2,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3788 chr4 49849709 . A G 0 PASS DP=67;GPV=1;SPV=0.037054;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:36,7:15,2:21,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3789 chr4 49850379 . T A 0 PASS DP=50;GPV=1;SPV=0.067259;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,5:21,4:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3790 chr4 50198909 . T C 0 PASS DP=100;GPV=1;SPV=0.0014098;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:40,13:20,11:20,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3791 chr4 50560189 . T C 0 PASS DP=94;GPV=1;SPV=0.0027297;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:41,13:19,6:22,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3792 chr4 50866953 . T C 0 PASS DP=54;GPV=1;SPV=0.18626;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:1,0:31,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3793 chr4 51119009 . T A 0 PASS DP=184;GPV=1;SPV=0.019323;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:104:86,18:18,8:68,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3794 chr4 51169304 . T G 0 PASS DP=54;GPV=1;SPV=0.16556;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:0,0:31,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3795 chr4 51274462 . G C 0 PASS DP=28;GPV=1;SPV=0.066667;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:11,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3796 chr4 51537779 . C T 0 PASS DP=18;GPV=1;SPV=0.23529;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:7,2:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3797 chr4 51560944 . A T 0 PASS DP=99;GPV=1;SPV=0.038098;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:67:59,8:30,6:29,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3798 chr4 51640205 . T C 0 PASS DP=48;GPV=1;SPV=0.18481;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:2,0:26,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3799 chr4 52084051 . A C 0 PASS DP=68;GPV=1;SPV=0.11429;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:41:1,3:0,1:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3800 chr4 52309381 . C CAAAAA 0 PASS DP=27;GPV=1;SPV=0.0067873;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:3,8:3,7:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3801 chr4 52733556 . TATACATATAC T 0 PASS DP=66;GPV=1;SPV=0.036255;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:26,9:15,6:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3802 chr4 53417767 . T A 0 PASS DP=43;GPV=1;SPV=0.35714;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:3,2:1,1:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3803 chr4 53788426 . A ATGTG 0 PASS DP=35;GPV=1;SPV=0.082213;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,5:4,4:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3804 chr4 53880669 . A C 0 PASS DP=48;GPV=1;SPV=0.002399;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:13,13:7,4:6,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3805 chr4 54408971 . C G 0 PASS DP=77;GPV=1;SPV=0.0022452;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:30,12:21,9:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3806 chr4 55535739 . C CTT 0 PASS DP=28;GPV=1;SPV=0.024318;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,9:9,7:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3807 chr4 56285267 . G C 0 PASS DP=64;GPV=1;SPV=0.010825;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:28,7:17,4:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3808 chr4 56862339 . AAG A 0 PASS DP=41;GPV=1;SPV=0.23453;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:12,2:13,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3809 chr4 56915242 . T A 0 PASS DP=30;GPV=1;SPV=0.18479;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,5:9,4:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3810 chr4 57195392 . A T 0 PASS DP=63;GPV=1;SPV=0.0019889;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:26,10:14,6:12,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3811 chr4 58516672 . A AACACAC 0 PASS DP=49;GPV=1;SPV=0.0044583;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,10:8,2:8,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3812 chr4 58780188 . G A 0 PASS DP=59;GPV=1;SPV=0.11505;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:18,2:13,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3813 chr4 58849888 . C T 0 PASS DP=63;GPV=1;SPV=0.0039777;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:27,9:12,7:15,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3814 chr4 59244838 . C CA 0 PASS DP=40;GPV=1;SPV=0.043327;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:14,11:8,7:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3815 chr4 59519025 . ACC A 0 PASS DP=23;GPV=1;SPV=0.055901;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:0,0:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3816 chr4 59905347 . A ATG 0 PASS DP=40;GPV=1;SPV=0.026928;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,5:10,3:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3817 chr4 60611412 . GAGAA G 0 PASS DP=42;GPV=1;SPV=0.014502;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:5,5:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3818 chr4 61072909 . C CTATTATTAT 0 PASS DP=47;GPV=1;SPV=0.039018;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:15,12:2,5:13,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3819 chr4 61215541 . ATT A 0 PASS DP=22;GPV=1;SPV=0.022999;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,6:7,1:0,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3820 chr4 62996598 . T C 0 PASS DP=61;GPV=1;SPV=0.002714;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,7:7,3:14,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3821 chr4 64512497 . C CAAA 0 PASS DP=26;GPV=1;SPV=0.18447;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,4:5,3:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3822 chr4 65129734 . G C 0 PASS DP=63;GPV=1;SPV=3.3183e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:19,13:12,7:7,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3823 chr4 65365649 . C CTATA 0 PASS DP=25;GPV=1;SPV=0.12587;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:5,4:4,3:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3824 chr4 65465456 . GA G 0 PASS DP=49;GPV=1;SPV=0.096637;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:16,1:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3825 chr4 65995025 . C A 0 PASS DP=38;GPV=1;SPV=0.027424;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,7:8,1:9,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3826 chr4 66169113 . G GT 0 PASS DP=48;GPV=1;SPV=2.6712e-05;SS=2;SSC=45;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:11,14:4,9:7,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3827 chr4 67121416 . T TTCTC 0 PASS DP=45;GPV=1;SPV=0.018904;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,8:6,1:10,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3828 chr4 67439786 . G T 0 PASS DP=75;GPV=1;SPV=6.7856e-06;SS=2;SSC=51;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:23,15:12,7:11,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3829 chr4 67635750 . T TCTTGTTGTTCAATCTAGTAATTTCTCTCTTTTCTA 0 PASS DP=35;GPV=1;SPV=0.034996;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,6:8,4:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3830 chr4 69064106 . GAAAGAA G 0 PASS DP=33;GPV=1;SPV=0.014159;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,6:5,4:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3831 chr4 70520010 . AT A 0 PASS DP=59;GPV=1;SPV=0.0048555;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:21,17:13,4:8,13
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3832 chr4 71011232 . CT C 0 PASS DP=29;GPV=1;SPV=0.14404;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,6:11,4:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3833 chr4 72227238 . T TA 0 PASS DP=53;GPV=1;SPV=0.019351;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:19,12:11,5:8,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3834 chr4 72667860 . T A 0 PASS DP=57;GPV=1;SPV=0.0022409;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,9:13,4:9,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3835 chr4 73270285 . ATT A 0 PASS DP=30;GPV=1;SPV=0.32536;SS=2;SSC=4;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,5:7,2:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3836 chr4 73788258 . GGAGGAGGATGAGAAA G 0 PASS DP=26;GPV=1;SPV=0.024256;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,8:6,5:1,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3837 chr4 76646229 . T A 0 PASS DP=52;GPV=1;SPV=0.045693;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:24,5:15,2:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3838 chr4 76928092 . C CA 0 PASS DP=37;GPV=1;SPV=0.017292;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,7:8,6:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3839 chr4 77595098 . AT A 0 PASS DP=48;GPV=1;SPV=0.0037259;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:14,14:9,7:5,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3840 chr4 78137046 . GA G 0 PASS DP=64;GPV=1;SPV=1.3094e-05;SS=2;SSC=48;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:21,21:7,7:14,14
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3841 chr4 78465956 . C A 0 PASS DP=61;GPV=1;SPV=0.0011625;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,9:8,5:14,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3842 chr4 79547385 . C G 0 PASS DP=67;GPV=1;SPV=2.3532e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:19,12:10,5:9,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3843 chr4 80208540 . A AACAC 0 PASS DP=52;GPV=1;SPV=0.032319;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:23,10:18,8:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3844 chr4 80622916 . G T 0 PASS DP=56;GPV=1;SPV=0.0026611;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,9:12,5:10,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3845 chr4 80651704 . T TTGTGTGTGTG 0 PASS DP=43;GPV=1;SPV=0.047826;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:8,12:5,6:3,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3846 chr4 81227215 . C T 0 PASS DP=68;GPV=1;SPV=0.00017189;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:24,12:11,5:13,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3847 chr4 82077994 . G A 0 PASS DP=35;GPV=1;SPV=0.24625;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,4:6,1:13,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3848 chr4 82318950 . AGAAG A 0 PASS DP=51;GPV=1;SPV=0.12884;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:14,4:5,2:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3849 chr4 82599026 . CAA C 0 PASS DP=59;GPV=1;SPV=0.034956;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:18,5:9,1:9,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3850 chr4 83579077 . T C 0 PASS DP=20;GPV=1;SPV=0.069231;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,4:2,1:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3851 chr4 84121099 . G T 0 PASS DP=67;GPV=1;SPV=0.016437;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:36,10:16,8:20,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3852 chr4 85598897 . A T 0 PASS DP=63;GPV=1;SPV=0.0004646;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:23,11:11,5:12,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3853 chr4 85888402 . G GA 0 PASS DP=37;GPV=1;SPV=0.034106;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:11,9:9,8:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3854 chr4 86842707 . AAAAAG A 0 PASS DP=44;GPV=1;SPV=0.012802;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,10:4,1:9,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3855 chr4 86842815 . TTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC T 0 PASS DP=22;GPV=1;SPV=0.097744;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:4,3:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3856 chr4 87616268 . C T 0 PASS DP=45;GPV=1;SPV=0.00068054;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:10,14:7,10:3,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3857 chr4 87923765 . A AT 0 PASS DP=43;GPV=1;SPV=0.038146;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:13,7:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3858 chr4 88295154 . C G 0 PASS DP=64;GPV=1;SPV=0.0014004;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:24,9:11,3:13,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3859 chr4 89356553 . CTTT C 0 PASS DP=34;GPV=1;SPV=0.019341;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,9:1,2:10,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3860 chr4 89356569 . TTTTC T 0 PASS DP=32;GPV=1;SPV=0.046518;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:3,2:8,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3861 chr4 89846079 . A G 0 PASS DP=39;GPV=1;SPV=0.090728;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,6:9,5:12,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3862 chr4 89903897 . G GAA 0 PASS DP=40;GPV=1;SPV=0.036825;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,8:10,7:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3863 chr4 91496796 . AT A 0 PASS DP=34;GPV=1;SPV=0.10447;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:11,1:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3864 chr4 91974275 . T A 0 PASS DP=66;GPV=1;SPV=2.0279e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:22,17:10,7:12,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3865 chr4 91997999 . G A 0 PASS DP=81;GPV=1;SPV=0.00013424;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:33,15:19,8:14,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3866 chr4 92083882 . C T 0 PASS DP=59;GPV=1;SPV=0.00031695;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:21,12:9,5:12,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3867 chr4 92646888 . C T 0 PASS DP=82;GPV=1;SPV=0.14706;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:7,8:2,3:5,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3868 chr4 93870622 . C CAAAAAA 0 PASS DP=34;GPV=1;SPV=0.1839;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:12,6:6,5:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3869 chr4 95087003 . T C 0 PASS DP=39;GPV=1;SPV=0.0083551;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,10:14,9:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3870 chr4 95328040 . C CTTT 0 PASS DP=26;GPV=1;SPV=0.005418;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:4,10:1,9:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3871 chr4 98020050 . G C 0 PASS DP=41;GPV=1;SPV=0.021382;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,7:7,5:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3872 chr4 98828584 . GA G 0 PASS DP=36;GPV=1;SPV=0.070707;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:3,5:1,3:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3873 chr4 99516244 . C G 0 PASS DP=60;GPV=1;SPV=0.00025356;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:21,12:8,8:13,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3874 chr4 99742985 . G A 0 PASS DP=51;GPV=1;SPV=0.012389;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:23,8:14,6:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3875 chr4 101164244 . CCAT C 0 PASS DP=26;GPV=1;SPV=0.044851;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,8:5,6:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3876 chr4 101426865 . CA C 0 PASS DP=27;GPV=1;SPV=0.04257;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:5,6:2,2:3,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3877 chr4 101664294 . G T 0 PASS DP=58;GPV=1;SPV=0.025917;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:24,5:11,4:13,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3878 chr4 103237571 . A G 0 PASS DP=58;GPV=1;SPV=0.084757;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:15,1:13,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3879 chr4 103799073 . T C 0 PASS DP=65;GPV=1;SPV=7.4062e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:17,28:5,12:12,16
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3880 chr4 103809930 . G T 0 PASS DP=61;GPV=1;SPV=3.4578e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:17,18:4,9:13,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3881 chr4 105008884 . A ATT 0 PASS DP=37;GPV=1;SPV=0.0052134;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:14,11:5,7:9,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3882 chr4 105204234 . T TAC 0 PASS DP=47;GPV=1;SPV=0.090728;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:21,6:10,3:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3883 chr4 106633854 . C CA 0 PASS DP=41;GPV=1;SPV=0.0099771;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:5,12:3,2:2,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3884 chr4 107775491 . C A 0 PASS DP=55;GPV=1;SPV=0.0018234;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:19,8:9,3:10,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3885 chr4 108409382 . G A 0 PASS DP=52;GPV=1;SPV=0.19341;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:12,1:19,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3886 chr4 108448970 . A AAAAAG 0 PASS DP=26;GPV=1;SPV=0.022999;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,6:4,3:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3887 chr4 108600907 . AT A 0 PASS DP=48;GPV=1;SPV=0.030759;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:7,1:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3888 chr4 108675699 . C T 0 PASS DP=44;GPV=1;SPV=0.06523;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:11,3:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3889 chr4 109314581 . G A 0 PASS DP=64;GPV=1;SPV=0.0022996;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:27,10:16,6:11,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3890 chr4 109328151 . G C 0 PASS DP=52;GPV=1;SPV=0.00082953;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,10:7,8:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3891 chr4 110186820 . A AT 0 PASS DP=34;GPV=1;SPV=0.098383;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:9,7:4,4:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3892 chr4 110256884 . C CT 0 PASS DP=56;GPV=1;SPV=0.039872;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:20,10:5,6:15,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3893 chr4 110381304 . CTTTTTTT C 0 PASS DP=19;GPV=1;SPV=0.17622;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,4:4,3:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3894 chr4 112052387 . GCA G 0 PASS DP=67;GPV=1;SPV=0.0025635;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:29,10:19,7:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3895 chr4 112052390 . G T 0 PASS DP=65;GPV=1;SPV=0.0022088;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:26,9:16,7:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3896 chr4 112090482 . C A 0 PASS DP=75;GPV=1;SPV=0.0010226;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:30,10:17,5:13,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3897 chr4 113163770 . A C 0 PASS DP=26;GPV=1;SPV=0.26667;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,2:3,1:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3898 chr4 113459638 . CT C 0 PASS DP=43;GPV=1;SPV=0.006592;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:8,6:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3899 chr4 114623115 . A T 0 PASS DP=70;GPV=1;SPV=0.0085883;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:30,7:18,2:12,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3900 chr4 114916536 . C CTG 0 PASS DP=50;GPV=1;SPV=0.028152;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:15,11:10,8:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3901 chr4 118251125 . A AT 0 PASS DP=45;GPV=1;SPV=0.049827;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,9:9,4:10,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3902 chr4 119789253 . A T 0 PASS DP=63;GPV=1;SPV=0.033431;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:15,6:11,4:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3903 chr4 119789254 . C T 0 PASS DP=61;GPV=1;SPV=0.1184;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:16,4:11,2:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3904 chr4 120227229 . G C 0 PASS DP=85;GPV=1;SPV=0.00019041;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:34,13:21,7:13,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3905 chr4 120307384 . ATTT A 0 PASS DP=31;GPV=1;SPV=0.10288;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,6:11,4:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3906 chr4 121017432 . AC A 0 PASS DP=52;GPV=1;SPV=0.21758;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:15,2:17,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3907 chr4 121635027 . T C 0 PASS DP=30;GPV=1;SPV=0.031264;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:8,3:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3908 chr4 122720887 . T TA 0 PASS DP=52;GPV=1;SPV=0.019351;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:19,12:12,7:7,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3909 chr4 124715670 . T TTATATG 0 PASS DP=54;GPV=1;SPV=0.0041486;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:10,11:7,5:3,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3910 chr4 125715759 . AAAC A 0 PASS DP=61;GPV=1;SPV=0.03385;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:27,5:17,4:10,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3911 chr4 126584511 . A ATT 0 PASS DP=28;GPV=1;SPV=0.044272;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:7,7:5,6:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3912 chr4 126663898 . A AAAGATATATATATAT 0 PASS DP=45;GPV=1;SPV=0.084902;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:11,2:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3913 chr4 129479178 . CTTCT C 0 PASS DP=43;GPV=1;SPV=0.013215;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,9:4,5:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3914 chr4 130715213 . C A 0 PASS DP=71;GPV=1;SPV=0.002428;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:31,10:18,7:13,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3915 chr4 131448941 . A G 0 PASS DP=71;GPV=1;SPV=0.00094808;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:26,9:13,6:13,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3916 chr4 131735926 . A T 0 PASS DP=18;GPV=1;SPV=0.18301;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:6,2:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3917 chr4 131743490 . G A 0 PASS DP=193;GPV=1;SPV=0.013808;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:106:94,12:61,8:33,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3918 chr4 131749715 . G C 0 PASS DP=218;GPV=1;SPV=0.014927;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:124:107,17:54,11:53,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3919 chr4 131814343 . A G 0 PASS DP=76;GPV=1;SPV=0.072687;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:44,6:25,4:19,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3920 chr4 132636067 . G A 0 PASS DP=31;GPV=1;SPV=0.081597;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:10,4:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3921 chr4 132894907 . T TA 0 PASS DP=45;GPV=1;SPV=0.0014755;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,9:8,2:7,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3922 chr4 132931526 . A ATTT 0 PASS DP=31;GPV=1;SPV=0.001806;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:2,12:0,9:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3923 chr4 134024923 . AT A 0 PASS DP=37;GPV=1;SPV=0.029412;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:5,8:2,5:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3924 chr4 135417094 . T C 0 PASS DP=22;GPV=1;SPV=0.082353;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,3:1,1:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3925 chr4 136148051 . G A 0 PASS DP=76;GPV=1;SPV=0.028768;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:40,7:19,2:21,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3926 chr4 136153727 . T TTATATATATA 0 PASS DP=18;GPV=1;SPV=0.024887;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:3,6:3,3:0,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3927 chr4 136620055 . GTATA G 0 PASS DP=42;GPV=1;SPV=0.0030458;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,11:6,8:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3928 chr4 137930087 . A T 0 PASS DP=65;GPV=1;SPV=0.0018725;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:28,11:13,4:15,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3929 chr4 139405226 . A G 0 PASS DP=64;GPV=1;SPV=9.3228e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:20,18:9,10:11,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3930 chr4 140776840 . T C 0 PASS DP=59;GPV=1;SPV=0.0010222;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:23,11:10,6:13,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3931 chr4 141426356 . A ATCTG 0 PASS DP=58;GPV=1;SPV=0.0030514;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:11,10:4,7:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3932 chr4 143036415 . T G 0 PASS DP=82;GPV=1;SPV=0.00041078;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:32,11:16,3:16,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3933 chr4 143123355 . T G 0 PASS DP=71;GPV=1;SPV=0.002428;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:31,10:14,3:17,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3934 chr4 143956227 . T G 0 PASS DP=44;GPV=1;SPV=0.044088;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:11,2:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3935 chr4 145835562 . A T 0 PASS DP=33;GPV=1;SPV=0.0084353;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,5:4,3:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3936 chr4 145835563 . A G 0 PASS DP=32;GPV=1;SPV=0.019883;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:4,2:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3937 chr4 145835564 . T C 0 PASS DP=34;GPV=1;SPV=0.010792;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:6,3:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3938 chr4 147541067 . CA C 0 PASS DP=24;GPV=1;SPV=0.048055;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,5:3,4:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3939 chr4 147621985 . C CT 0 PASS DP=51;GPV=1;SPV=0.0012415;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:18,12:6,9:12,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3940 chr4 148038938 . G GTTTTGAAACTTAGTGTTAT 0 PASS DP=48;GPV=1;SPV=0.042001;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,6:9,3:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3941 chr4 149269330 . T A 0 PASS DP=20;GPV=1;SPV=0.35897;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,2:4,1:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3942 chr4 149374997 . GT G 0 PASS DP=60;GPV=1;SPV=0.037344;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:33,8:13,3:20,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3943 chr4 151097439 . A ATT 0 PASS DP=50;GPV=1;SPV=0.0066911;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:19,12:11,7:8,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3944 chr4 151445849 . A AATATATATATATAT 0 PASS DP=22;GPV=1;SPV=0.049536;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:4,9:3,5:1,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3945 chr4 151653358 . C G 0 PASS DP=62;GPV=1;SPV=0.0080354;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:29,9:17,4:12,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3946 chr4 151765852 . C CAGAGAGAGAG 0 PASS DP=29;GPV=1;SPV=0.0065492;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:4,7:2,6:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3947 chr4 152617531 . A ATG 0 PASS DP=40;GPV=1;SPV=0.073359;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,4:10,3:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3948 chr4 153117030 . T TA 0 PASS DP=52;GPV=1;SPV=0.0074524;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:12,12:8,7:4,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3949 chr4 153346605 . G C 0 PASS DP=47;GPV=1;SPV=0.0025344;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,10:7,7:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3950 chr4 153390889 . A ATATGTGTGTGTG 0 PASS DP=32;GPV=1;SPV=0.0012716;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:6,11:4,3:2,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3951 chr4 154875182 . A ATGTG 0 PASS DP=35;GPV=1;SPV=0.0074494;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:6,5:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3952 chr4 155552235 . G C 0 PASS DP=55;GPV=1;SPV=0.018909;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:8,3:13,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3953 chr4 155957237 . T G 0 PASS DP=22;GPV=1;SPV=0.0035042;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:12:3,9:0,2:3,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3954 chr4 156439096 . A C 0 PASS DP=61;GPV=1;SPV=0.00027127;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:23,14:11,6:12,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3955 chr4 157395225 . AGAG A 0 PASS DP=49;GPV=1;SPV=0.046659;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:21,8:16,6:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3956 chr4 157665341 . T TCACACACACACACACACA 0 PASS DP=35;GPV=1;SPV=0.037681;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:7,7:2,5:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3957 chr4 158529250 . G T 0 PASS DP=60;GPV=1;SPV=0.058162;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:13,4:8,2:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3958 chr4 158695714 . T C 0 PASS DP=62;GPV=1;SPV=0.00015402;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,9:8,3:9,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3959 chr4 159062697 . G GTCTCTCTCTCTCTCTCTCTCTCTC 0 PASS DP=27;GPV=1;SPV=0.12174;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:3,2:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3960 chr4 159385405 . TAA T 0 PASS DP=53;GPV=1;SPV=0.0011292;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:14,13:8,3:6,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3961 chr4 159808521 . G C 0 PASS DP=43;GPV=1;SPV=0.0010229;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,10:9,8:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3962 chr4 160144525 . TTTG T 0 PASS DP=26;GPV=1;SPV=0.46667;SS=2;SSC=3;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,2:1,1:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3963 chr4 160547231 . G T 0 PASS DP=64;GPV=1;SPV=0.00080797;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:25,11:14,4:11,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3964 chr4 160633007 . T C 0 PASS DP=70;GPV=1;SPV=1.9551e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:21,13:10,6:11,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3965 chr4 161332099 . T A 0 PASS DP=62;GPV=1;SPV=0.1958;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:5,3:2,2:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3966 chr4 162453267 . T C 0 PASS DP=60;GPV=1;SPV=0.0087152;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:25,7:13,5:12,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3967 chr4 162621887 . T C 0 PASS DP=71;GPV=1;SPV=0.00090285;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:29,11:17,4:12,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3968 chr4 163448601 . A C 0 PASS DP=73;GPV=1;SPV=0.16667;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:3,3:1,1:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3969 chr4 163688370 . C T 0 PASS DP=43;GPV=1;SPV=0.030474;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:17,16:9,11:8,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3970 chr4 164035933 . A T 0 PASS DP=52;GPV=1;SPV=0.33333;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:4,2:4,1:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3971 chr4 164199681 . C CAGAGAGAGAGAGAG 0 PASS DP=29;GPV=1;SPV=0.27778;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:3,2:2,1:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3972 chr4 164313182 . CA C 0 PASS DP=44;GPV=1;SPV=0.0053975;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:15,14:14,9:1,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3973 chr4 164735546 . ATTTTT A 0 PASS DP=32;GPV=1;SPV=0.036089;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,5:4,3:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3974 chr4 165707190 . CA C 0 PASS DP=33;GPV=1;SPV=0.022595;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:6,5:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3975 chr4 166251139 . A T 0 PASS DP=59;GPV=1;SPV=0.2;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:1,2:1,1:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3976 chr4 166491022 . A G 0 PASS DP=38;GPV=1;SPV=0.0033127;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:8,10:4,7:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3977 chr4 166603720 . CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA C 0 PASS DP=23;GPV=1;SPV=0.12799;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,5:2,4:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3978 chr4 166603732 . A C 0 PASS DP=30;GPV=1;SPV=0.26923;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:5,2:2,1:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3979 chr4 167345604 . G A 0 PASS DP=52;GPV=1;SPV=0.010975;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:18,13:8,5:10,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3980 chr4 168333164 . CAA C 0 PASS DP=50;GPV=1;SPV=0.041917;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:12,9:7,8:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3981 chr4 169087473 . A ATT 0 PASS DP=32;GPV=1;SPV=0.037461;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:5,8:5,5:0,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3982 chr4 169233248 . CA C 0 PASS DP=26;GPV=1;SPV=0.024256;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,8:4,6:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3983 chr4 169355377 . C T 0 PASS DP=64;GPV=1;SPV=0.00031521;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:25,14:11,9:14,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3984 chr4 169744966 . A C 0 PASS DP=56;GPV=1;SPV=0.097906;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:16,1:12,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3985 chr4 170102794 . G A 0 PASS DP=55;GPV=1;SPV=0.090553;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:23,6:6,1:17,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3986 chr4 170703373 . A G 0 PASS DP=74;GPV=1;SPV=0.0078314;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:34,8:15,6:19,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3987 chr4 171798904 . A ATATT 0 PASS DP=59;GPV=1;SPV=0.012781;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:21,11:10,7:11,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3988 chr4 172057729 . T A 0 PASS DP=30;GPV=1;SPV=0.12913;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:9,6:4,5:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3989 chr4 172503526 . G GTATATATATATATA 0 PASS DP=29;GPV=1;SPV=0.13055;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:3,3:12,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3990 chr4 174296763 . A AT 0 PASS DP=38;GPV=1;SPV=0.059497;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:9,5:4,3:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3991 chr4 176325561 . T TAA 0 PASS DP=42;GPV=1;SPV=0.057896;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,6:10,3:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3992 chr4 177185005 . AAG A 0 PASS DP=48;GPV=1;SPV=0.18481;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:23,3:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3993 chr4 177238841 . G T 0 PASS DP=79;GPV=1;SPV=1.8646e-06;SS=2;SSC=57;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:21,14:11,7:10,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3994 chr4 177238842 . T C 0 PASS DP=77;GPV=1;SPV=1.6571e-06;SS=2;SSC=57;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:20,14:9,7:11,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3995 chr4 177417940 . T C 0 PASS DP=34;GPV=1;SPV=0.037648;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:9,12:6,9:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3996 chr4 178300739 . CAA C 0 PASS DP=35;GPV=1;SPV=0.059497;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:10,6:5,5:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3997 chr4 179137490 . G C 0 PASS DP=79;GPV=1;SPV=0.0055583;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:35,8:15,3:20,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3998 chr4 179279208 . TTTTC T 0 PASS DP=59;GPV=1;SPV=0.0090372;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:30,13:17,8:13,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3999 chr4 180290348 . C CTT 0 PASS DP=40;GPV=1;SPV=0.10779;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,4:11,3:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4000 chr4 181031797 . G A 0 PASS DP=48;GPV=1;SPV=0.041183;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,8:10,3:10,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4001 chr4 181130688 . G A 0 PASS DP=34;GPV=1;SPV=0.0069381;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:8,4:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4002 chr4 181280528 . T TTTTAAAATAATTGATGAAATGAGGCAGATGTG 0 PASS DP=27;GPV=1;SPV=0.032107;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,5:4,3:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4003 chr4 181801651 . AATATAT A 0 PASS DP=21;GPV=1;SPV=0.03989;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:4,6:3,3:1,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4004 chr4 181803939 . C CAA 0 PASS DP=20;GPV=1;SPV=0.005418;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,6:2,5:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4005 chr4 182293458 . G A 0 PASS DP=77;GPV=1;SPV=0.00057391;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:32,12:13,6:19,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4006 chr4 183013415 . TTCCCC T 0 PASS DP=27;GPV=1;SPV=0.017544;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:7,11:1,6:6,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4007 chr4 185031220 . G GA 0 PASS DP=54;GPV=1;SPV=0.0054758;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:16,13:9,5:7,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4008 chr4 185053316 . GTT G 0 PASS DP=25;GPV=1;SPV=0.059497;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,5:6,4:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4009 chr4 185220484 . C CTT 0 PASS DP=45;GPV=1;SPV=0.029089;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,9:9,3:9,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4010 chr4 185426879 . CAAAAAAAAAAAA C 0 PASS DP=32;GPV=1;SPV=0.15415;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,8:5,5:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4011 chr4 185606854 . C A 0 PASS DP=72;GPV=1;SPV=0.0057699;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:9,4:13,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4012 chr4 186905242 . T TTC 0 PASS DP=54;GPV=1;SPV=0.0025855;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:16,13:8,6:8,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4013 chr4 186911004 . T A 0 PASS DP=55;GPV=1;SPV=0.0035252;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:21,8:12,4:9,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4014 chr4 186968630 . C G 0 PASS DP=50;GPV=1;SPV=0.046386;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,5:14,4:9,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4015 chr4 187013968 . A AGT 0 PASS DP=44;GPV=1;SPV=0.12376;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:23,6:14,4:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4016 chr4 187024475 . C A 0 PASS DP=49;GPV=1;SPV=0.028248;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:10,1:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4017 chr4 188891730 . A ATTT 0 PASS DP=43;GPV=1;SPV=0.036896;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:10,9:6,8:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4018 chr4 188974981 . A G 0 PASS DP=30;GPV=1;SPV=0.40598;SS=2;SSC=3;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,3:9,2:9,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4019 chr4 189688328 . A T 0 PASS DP=73;GPV=1;SPV=0.038332;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:34,5:16,4:18,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4020 chr4 190032876 . T C 0 PASS DP=42;GPV=1;SPV=0.0010244;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:9,13:6,11:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4021 chr4 190097528 . T C 0 PASS DP=351;GPV=1;SPV=0.020604;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:207:181,26:89,12:92,14
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4022 chr4 190106016 . T C 0 PASS DP=97;GPV=1;SPV=0.019271;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:64:55,9:46,7:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4023 chr4 190200729 . C G 0 PASS DP=19;GPV=1;SPV=0.21053;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:0,0:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4024 chr4 190204153 . T C 0 PASS DP=97;GPV=1;SPV=0.025299;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:44,15:4,4:40,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4025 chr5 89889 . G C 0 PASS DP=59;GPV=1;SPV=0.044988;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:9,1:15,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4026 chr5 196677 . C T 0 PASS DP=44;GPV=1;SPV=0.01531;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:19,8:7,1:12,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4027 chr5 230013 . TAGAGTTA T 0 PASS DP=78;GPV=1;SPV=0.023776;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:33,5:20,3:13,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4028 chr5 415365 . C G 0 PASS DP=49;GPV=1;SPV=0.19833;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:26,3:8,1:18,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4029 chr5 814097 . A G 0 PASS DP=33;GPV=1;SPV=0.1184;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:6,2:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4030 chr5 1339870 . C A 0 PASS DP=55;GPV=1;SPV=0.046608;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:23,7:19,6:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4031 chr5 2128134 . G A 0 PASS DP=60;GPV=1;SPV=0.00083483;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:23,11:12,4:11,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4032 chr5 2585334 . AGATG A 0 PASS DP=27;GPV=1;SPV=0.031674;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:3,9:2,5:1,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4033 chr5 2928097 . A G 0 PASS DP=60;GPV=1;SPV=3.6299e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:20,18:9,4:11,14
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4034 chr5 3117652 . A C 0 PASS DP=48;GPV=1;SPV=0.14395;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,4:12,2:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4035 chr5 3233520 . TAA T 0 PASS DP=22;GPV=1;SPV=0.026316;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,7:2,3:3,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4036 chr5 3249463 . C CGT 0 PASS DP=52;GPV=1;SPV=0.0095255;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:21,16:6,10:15,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4037 chr5 3324001 . G T 0 PASS DP=71;GPV=1;SPV=0.035683;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:32,8:16,1:16,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4038 chr5 5493008 . A G 0 PASS DP=19;GPV=1;SPV=0.16374;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:6,2:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4039 chr5 5904762 . G A 0 PASS DP=28;GPV=1;SPV=0.087179;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,5:6,2:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4040 chr5 7113148 . ATT A 0 PASS DP=53;GPV=1;SPV=0.0041629;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:11,8:6,6:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4041 chr5 7281323 . A G 0 PASS DP=60;GPV=1;SPV=0.33939;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:5,3:2,2:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4042 chr5 7633573 . T G 0 PASS DP=78;GPV=1;SPV=0.010155;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:41,10:21,7:20,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4043 chr5 7761147 . TC T 0 PASS DP=32;GPV=1;SPV=0.085095;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:8,3:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4044 chr5 7798584 . C T 0 PASS DP=52;GPV=1;SPV=0.37283;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:20,5:9,2:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4045 chr5 8375406 . A G 0 PASS DP=60;GPV=1;SPV=0.083915;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:17,2:12,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4046 chr5 10099947 . C CT 0 PASS DP=29;GPV=1;SPV=0.032284;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:7,6:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4047 chr5 10528489 . C CA 0 PASS DP=35;GPV=1;SPV=0.0036508;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:1,9:1,5:0,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4048 chr5 10592452 . A T 0 PASS DP=32;GPV=1;SPV=0.33333;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:4,2:2,1:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4049 chr5 10630886 . AG A 0 PASS DP=51;GPV=1;SPV=0.12591;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:8,2:19,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4050 chr5 11312684 . A ACACTCCCCATATACCCTCACCCTCAC 0 PASS DP=30;GPV=1;SPV=0.052107;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:3,3:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4051 chr5 11541851 . G A 0 PASS DP=24;GPV=1;SPV=0.018593;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,7:1,3:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4052 chr5 11600705 . C CAA 0 PASS DP=38;GPV=1;SPV=0.036825;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,8:8,7:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4053 chr5 11933508 . A AG 0 PASS DP=48;GPV=1;SPV=0.18393;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:26,4:12,3:14,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4054 chr5 12071303 . A C 0 PASS DP=65;GPV=1;SPV=0.0076491;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:29,8:9,5:20,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4055 chr5 13610200 . A G 0 PASS DP=80;GPV=1;SPV=3.8991e-08;SS=2;SSC=74;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:20,20:5,9:15,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4056 chr5 14548425 . CA C 0 PASS DP=34;GPV=1;SPV=0.037934;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,5:5,3:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4057 chr5 15010041 . A C 0 PASS DP=54;GPV=1;SPV=0.12939;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:14,3:15,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4058 chr5 15869499 . G A 0 PASS DP=59;GPV=1;SPV=0.015769;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:27,7:13,5:14,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4059 chr5 16453561 . A T 0 PASS DP=27;GPV=1;SPV=0.32967;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:7,4:3,3:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4060 chr5 17420129 . A ATGTGTGTGTG 0 PASS DP=44;GPV=1;SPV=0.087777;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,5:12,3:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4061 chr5 17521046 . C T 0 PASS DP=491;GPV=1;SPV=0.0058033;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:303:250,53:186,47:64,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4062 chr5 18054923 . A ATT 0 PASS DP=33;GPV=1;SPV=0.011229;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:9,9:4,7:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4063 chr5 18584175 . CA C 0 PASS DP=30;GPV=1;SPV=0.045694;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,6:9,3:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4064 chr5 19748112 . C CAAAAAAA 0 PASS DP=25;GPV=1;SPV=0.056522;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:6,4:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4065 chr5 20847903 . TACACACAC T 0 PASS DP=37;GPV=1;SPV=0.027053;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:10,6:7,3:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4066 chr5 20864445 . T C 0 PASS DP=95;GPV=1;SPV=0.0073164;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:33,14:15,9:18,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4067 chr5 20864483 . C CTTAT 0 PASS DP=89;GPV=1;SPV=0.0025805;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:35,11:19,8:16,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4068 chr5 20942282 . C A 0 PASS DP=66;GPV=1;SPV=0.00068283;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:28,14:10,7:18,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4069 chr5 21026379 . C CA 0 PASS DP=38;GPV=1;SPV=0.16205;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:22,6:14,4:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4070 chr5 21223000 . C CTT 0 PASS DP=30;GPV=1;SPV=0.066411;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:2,1:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4071 chr5 21719557 . G A 0 PASS DP=68;GPV=1;SPV=0.24484;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:26,4:9,3:17,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4072 chr5 22355524 . AT A 0 PASS DP=49;GPV=1;SPV=0.12446;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:28,5:13,4:15,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4073 chr5 22492351 . T A 0 PASS DP=54;GPV=1;SPV=0.00012306;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:15,18:6,8:9,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4074 chr5 22693655 . A C 0 PASS DP=59;GPV=1;SPV=0.00079701;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:20,9:9,6:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4075 chr5 23542017 . ATTTTTTTTTTTTT A 0 PASS DP=27;GPV=1;SPV=0.035837;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:5,2:6,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4076 chr5 23753775 . T TTTATTATTATTATTA 0 PASS DP=52;GPV=1;SPV=0.041061;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:19,10:7,6:12,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4077 chr5 24145683 . AAAAGAAAG A 0 PASS DP=48;GPV=1;SPV=0.01726;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:11,10:7,7:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4078 chr5 25737762 . T A 0 PASS DP=59;GPV=1;SPV=0.00088019;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:24,13:17,4:7,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4079 chr5 26157308 . GTTT G 0 PASS DP=29;GPV=1;SPV=0.12799;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:7,5:6,3:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4080 chr5 27044503 . C G 0 PASS DP=58;GPV=1;SPV=0.00010916;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:20,15:7,9:13,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4081 chr5 27713449 . TAA T 0 PASS DP=32;GPV=1;SPV=0.2488;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,4:4,1:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4082 chr5 28560321 . CT C 0 PASS DP=22;GPV=1;SPV=0.0037594;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:13:3,10:0,4:3,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4083 chr5 28701678 . A G 0 PASS DP=54;GPV=1;SPV=0.03791;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:23,8:13,7:10,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4084 chr5 29044401 . A AT 0 PASS DP=54;GPV=1;SPV=0.0095255;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:21,16:6,9:15,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4085 chr5 29489288 . C A 0 PASS DP=28;GPV=1;SPV=0.011071;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:7,11:3,5:4,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4086 chr5 29745481 . AAAT A 0 PASS DP=52;GPV=1;SPV=0.0092175;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:16,13:8,6:8,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4087 chr5 30112951 . A C 0 PASS DP=56;GPV=1;SPV=0.0019214;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:23,11:14,8:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4088 chr5 30489200 . G A 0 PASS DP=50;GPV=1;SPV=0.037288;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,9:6,6:12,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4089 chr5 30818058 . T C 0 PASS DP=35;GPV=1;SPV=0.045954;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,10:3,1:14,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4090 chr5 31326677 . TA T 0 PASS DP=27;GPV=1;SPV=0.041809;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:7,4:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4091 chr5 31724557 . G A 0 PASS DP=52;GPV=1;SPV=0.0016144;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:15,16:7,13:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4092 chr5 31817965 . A ATT 0 PASS DP=45;GPV=1;SPV=0.031059;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:8,14:5,5:3,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4093 chr5 32086843 . A AT 0 PASS DP=45;GPV=1;SPV=0.030629;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:10,12:5,8:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4094 chr5 32781090 . T G 0 PASS DP=45;GPV=1;SPV=0.049781;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,10:7,8:13,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4095 chr5 32973804 . T TAA 0 PASS DP=62;GPV=1;SPV=0.010427;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:31,10:13,4:18,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4096 chr5 33158130 . G GA 0 PASS DP=33;GPV=1;SPV=0.032647;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:8,8:6,7:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4097 chr5 33644536 . T C 0 PASS DP=67;GPV=1;SPV=0.088082;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:37,5:20,4:17,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4098 chr5 34208425 . C T 0 PASS DP=63;GPV=1;SPV=0.12392;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:34,4:15,3:19,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4099 chr5 35321597 . C A 0 PASS DP=41;GPV=1;SPV=0.13473;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,4:8,3:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4100 chr5 35793759 . C CACACACACACACAT 0 PASS DP=39;GPV=1;SPV=0.096154;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:4,7:2,2:2,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4101 chr5 36386679 . C CT 0 PASS DP=34;GPV=1;SPV=0.0021594;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:8,11:5,8:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4102 chr5 36952018 . C CTGTGTG 0 PASS DP=32;GPV=1;SPV=0.014757;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:6,8:3,6:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4103 chr5 39176137 . GTTT G 0 PASS DP=22;GPV=1;SPV=0.11538;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,4:4,3:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4104 chr5 39967683 . G A 0 PASS DP=41;GPV=1;SPV=0.039195;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:17,12:11,4:6,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4105 chr5 40876480 . G T 0 PASS DP=57;GPV=1;SPV=0.00010641;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:19,14:10,6:9,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4106 chr5 41999490 . TATAC T 0 PASS DP=40;GPV=1;SPV=0.13842;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:13,1:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4107 chr5 41999496 . T C 0 PASS DP=40;GPV=1;SPV=0.14022;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:14,2:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4108 chr5 44569420 . G C 0 PASS DP=57;GPV=1;SPV=0.04473;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:29,6:17,2:12,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4109 chr5 45246386 . T C 0 PASS DP=61;GPV=1;SPV=1.3467e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:19,18:6,8:13,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4110 chr5 46570859 . C T 0 PASS DP=28;GPV=1;SPV=0.028986;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,7:4,2:4,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4111 chr5 46583919 . G C 0 PASS DP=30;GPV=1;SPV=0.03285;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,6:6,2:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4112 chr5 46592559 . C T 0 PASS DP=17;GPV=1;SPV=0.20588;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:0,0:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4113 chr5 46648171 . C T 0 PASS DP=92;GPV=1;SPV=0.030179;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:50,7:33,4:17,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4114 chr5 46651839 . C T 0 PASS DP=34;GPV=1;SPV=0.083578;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:0,0:15,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4115 chr5 46663721 . G C 0 PASS DP=58;GPV=1;SPV=0.21008;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:38,5:15,1:23,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4116 chr5 46664833 . A C 0 PASS DP=42;GPV=1;SPV=0.062457;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:9,1:11,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4117 chr5 46666288 . G T 0 PASS DP=74;GPV=1;SPV=0.071484;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:13,2:22,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4118 chr5 46680089 . CT C 0 PASS DP=103;GPV=1;SPV=0.035014;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:60:54,6:31,2:23,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4119 chr5 46817927 . G C 0 PASS DP=38;GPV=1;SPV=0.028335;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:9,5:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4120 chr5 46872417 . T C 0 PASS DP=58;GPV=1;SPV=0.15567;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:0,0:33,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4121 chr5 46942783 . T C 0 PASS DP=35;GPV=1;SPV=0.13971;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:0,0:18,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4122 chr5 47066201 . T C 0 PASS DP=17;GPV=1;SPV=0.20588;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:0,0:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4123 chr5 47074114 . A C 0 PASS DP=16;GPV=1;SPV=0.23333;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:6,2:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4124 chr5 47134703 . G A 0 PASS DP=70;GPV=1;SPV=0.031149;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:31,5:15,2:16,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4125 chr5 47144442 . G T 0 PASS DP=55;GPV=1;SPV=0.014008;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:28,11:1,1:27,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4126 chr5 47204182 . GA G 0 PASS DP=77;GPV=1;SPV=0.010244;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:37,8:15,6:22,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4127 chr5 50109937 . G A 0 PASS DP=52;GPV=1;SPV=0.043846;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:16,3:16,3:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4128 chr5 51215492 . T G 0 PASS DP=64;GPV=1;SPV=0.13695;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:38,5:22,1:16,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4129 chr5 52108360 . C CTT 0 PASS DP=44;GPV=1;SPV=0.1043;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:25,6:12,2:13,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4130 chr5 52369650 . C CA 0 PASS DP=35;GPV=1;SPV=0.010479;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,9:4,7:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4131 chr5 52655948 . G A 0 PASS DP=32;GPV=1;SPV=0.085095;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:10,2:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4132 chr5 53005580 . C CAAA 0 PASS DP=47;GPV=1;SPV=0.017149;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:6,8:4,6:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4133 chr5 53391053 . G GACACACACACACACAC 0 PASS DP=33;GPV=1;SPV=0.020229;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:6,7:5,6:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4134 chr5 54992552 . AGAT A 0 PASS DP=59;GPV=1;SPV=0.18072;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:16,1:19,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4135 chr5 55185971 . CTTT C 0 PASS DP=40;GPV=1;SPV=0.024256;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:7,10:4,7:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4136 chr5 56844183 . G GTT 0 PASS DP=31;GPV=1;SPV=0.0098105;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,5:5,4:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4137 chr5 57219375 . CAAA C 0 PASS DP=25;GPV=1;SPV=0.18132;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,4:4,3:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4138 chr5 57444336 . C A 0 PASS DP=71;GPV=1;SPV=0.00010649;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:28,17:16,9:12,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4139 chr5 58544507 . C T 0 PASS DP=60;GPV=1;SPV=0.01487;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:31,10:15,6:16,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4140 chr5 60725790 . T G 0 PASS DP=42;GPV=1;SPV=0.10217;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:8,4:4,3:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4141 chr5 61431372 . CA C 0 PASS DP=31;GPV=1;SPV=0.23248;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:9,2:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4142 chr5 61440360 . T TA 0 PASS DP=55;GPV=1;SPV=0.0017321;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:19,16:9,7:10,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4143 chr5 62905829 . T A 0 PASS DP=69;GPV=1;SPV=0.0073148;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:35,11:21,3:14,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4144 chr5 63704518 . A G 0 PASS DP=63;GPV=1;SPV=0.047619;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:37:1,3:1,1:0,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4145 chr5 63823485 . A AACACACACACACACACAC 0 PASS DP=31;GPV=1;SPV=0.014706;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:4,9:3,5:1,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4146 chr5 63867942 . AT A 0 PASS DP=18;GPV=1;SPV=0.029412;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,5:3,4:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4147 chr5 64669872 . ATGAT A 0 PASS DP=36;GPV=1;SPV=0.40966;SS=2;SSC=3;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:24,3:11,2:13,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4148 chr5 67274485 . ATT A 0 PASS DP=32;GPV=1;SPV=0.10779;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:6,1:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4149 chr5 67948449 . C CT 0 PASS DP=42;GPV=1;SPV=0.0017788;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:11,11:7,8:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4150 chr5 69252494 . CT C 0 PASS DP=25;GPV=1;SPV=0.034056;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,6:3,5:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4151 chr5 69333563 . C A 0 PASS DP=74;GPV=1;SPV=0.079426;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:36,4:18,3:18,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4152 chr5 70684573 . G A 0 PASS DP=32;GPV=1;SPV=0.085095;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:14,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4153 chr5 70783879 . G A 0 PASS DP=89;GPV=1;SPV=0.0026259;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:29,16:29,12:0,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4154 chr5 71312022 . A C 0 PASS DP=36;GPV=1;SPV=0.15197;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,6:14,2:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4155 chr5 71330970 . T C 0 PASS DP=29;GPV=1;SPV=0.16319;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:14,2:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4156 chr5 72683085 . CA C 0 PASS DP=23;GPV=1;SPV=0.080745;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:5,2:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4157 chr5 73494369 . CTT C 0 PASS DP=45;GPV=1;SPV=0.023188;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:7,14:6,9:1,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4158 chr5 74111003 . C A 0 PASS DP=31;GPV=1;SPV=0.11976;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,5:8,2:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4159 chr5 74187781 . C A 0 PASS DP=62;GPV=1;SPV=0.0017074;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:25,10:19,7:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4160 chr5 74697727 . C CA 0 PASS DP=45;GPV=1;SPV=0.045818;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,8:14,6:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4161 chr5 74771853 . CA C 0 PASS DP=59;GPV=1;SPV=0.079011;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:9,2:19,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4162 chr5 75140281 . GAAAGAAAGGAAGGA G 0 PASS DP=50;GPV=1;SPV=0.030049;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,8:14,6:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4163 chr5 75247240 . CTTT C 0 PASS DP=36;GPV=1;SPV=0.045151;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,7:9,5:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4164 chr5 75503842 . T A 0 PASS DP=33;GPV=1;SPV=0.021189;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,9:6,4:8,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4165 chr5 76237993 . T C 0 PASS DP=35;GPV=1;SPV=0.019118;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:6,3:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4166 chr5 76496729 . C T 0 PASS DP=49;GPV=1;SPV=0.0054457;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:18,14:5,2:13,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4167 chr5 77367532 . T C 0 PASS DP=39;GPV=1;SPV=0.039683;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:21:1,4:0,2:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4168 chr5 77777236 . TTTC T 0 PASS DP=49;GPV=1;SPV=0.12934;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:11,3:15,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4169 chr5 77794934 . A G 0 PASS DP=25;GPV=1;SPV=0.071429;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:2,4:1,1:1,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4170 chr5 78436980 . G C 0 PASS DP=65;GPV=1;SPV=0.00017157;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:18,17:10,6:8,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4171 chr5 78673176 . G GGTGT 0 PASS DP=40;GPV=1;SPV=0.0033075;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,8:6,5:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4172 chr5 79427731 . C T 0 PASS DP=35;GPV=1;SPV=0.045455;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:5,3:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4173 chr5 79823556 . A G 0 PASS DP=58;GPV=1;SPV=0.011954;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:16,8:10,2:6,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4174 chr5 80303728 . C CAAAAA 0 PASS DP=48;GPV=1;SPV=0.012176;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,9:7,5:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4175 chr5 80646105 . G GTTTTT 0 PASS DP=50;GPV=1;SPV=0.02099;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:21,11:16,6:5,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4176 chr5 80729857 . A C 0 PASS DP=72;GPV=1;SPV=0.00013115;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:28,15:17,9:11,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4177 chr5 80887094 . CTTT C 0 PASS DP=25;GPV=1;SPV=0.027415;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,7:3,4:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4178 chr5 80897781 . G A 0 PASS DP=46;GPV=1;SPV=0.0042541;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,9:14,4:4,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4179 chr5 82725386 . C A 0 PASS DP=52;GPV=1;SPV=0.1143;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:17,4:7,3:10,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4180 chr5 83202042 . C CAA 0 PASS DP=32;GPV=1;SPV=0.025565;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,5:4,4:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4181 chr5 84232428 . T C 0 PASS DP=69;GPV=1;SPV=0.0042803;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:22,8:13,6:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4182 chr5 84369243 . CAT C 0 PASS DP=58;GPV=1;SPV=0.074163;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:13,3:14,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4183 chr5 84564119 . T A 0 PASS DP=61;GPV=1;SPV=0.070707;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:3,4:2,2:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4184 chr5 85217095 . GA G 0 PASS DP=41;GPV=1;SPV=0.032417;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:9,7:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4185 chr5 86291908 . G A 0 PASS DP=47;GPV=1;SPV=0.025884;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:20,13:14,8:6,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4186 chr5 87001902 . AAGAAAG A 0 PASS DP=51;GPV=1;SPV=0.0041553;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:4,16:2,9:2,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4187 chr5 87989280 . C CAAAAAAAA 0 PASS DP=48;GPV=1;SPV=0.071698;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:23,5:11,4:12,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4188 chr5 88676321 . TTCCTCCTCCTCCTCC T 0 PASS DP=33;GPV=1;SPV=0.031813;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,4:2,1:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4189 chr5 88869312 . TATAC T 0 PASS DP=23;GPV=1;SPV=0.004995;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:10:0,4:0,0:0,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4190 chr5 89504536 . G A 0 PASS DP=53;GPV=1;SPV=0.059933;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:10,2:13,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4191 chr5 91175363 . T G 0 PASS DP=69;GPV=1;SPV=0.0058487;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:30,8:13,2:17,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4192 chr5 91338508 . T A 0 PASS DP=49;GPV=1;SPV=5.7647e-06;SS=2;SSC=52;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:9,11:6,5:3,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4193 chr5 92113927 . GTA G 0 PASS DP=19;GPV=1;SPV=0.070707;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:3,5:3,4:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4194 chr5 92346468 . A ATG 0 PASS DP=22;GPV=1;SPV=0.029412;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:4,5:1,2:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4195 chr5 95805833 . C CTT 0 PASS DP=29;GPV=1;SPV=0.037648;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:6,4:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4196 chr5 96752539 . AAACCTCAGGGAT A 0 PASS DP=28;GPV=1;SPV=0.088889;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:4,2:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4197 chr5 97152970 . T A 0 PASS DP=57;GPV=1;SPV=0.053676;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:30,6:18,3:12,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4198 chr5 98096721 . C T 0 PASS DP=43;GPV=1;SPV=0.1021;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,5:12,3:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4199 chr5 99469264 . A G 0 PASS DP=48;GPV=1;SPV=0.026352;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,10:15,6:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4200 chr5 99861268 . C A 0 PASS DP=31;GPV=1;SPV=0.15398;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:8,3:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4201 chr5 100470648 . C CTAT 0 PASS DP=47;GPV=1;SPV=0.00026093;SS=2;SSC=35;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:5,13:2,11:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4202 chr5 100493009 . ATATATATTTATGTAAATATATATT A 0 PASS DP=43;GPV=1;SPV=0.058687;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,4:7,1:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4203 chr5 100675570 . TGTGTGTGTGTGTGCGC T 0 PASS DP=67;GPV=1;SPV=0.031273;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:29,12:22,8:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4204 chr5 100785138 . T TCTTC 0 PASS DP=36;GPV=1;SPV=0.10277;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:11,8:4,3:7,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4205 chr5 100852114 . CT C 0 PASS DP=27;GPV=1;SPV=0.14757;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,5:5,2:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4206 chr5 100875562 . C G 0 PASS DP=70;GPV=1;SPV=0.00077059;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:30,13:21,6:9,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4207 chr5 101471849 . C T 0 PASS DP=88;GPV=1;SPV=7.0935e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:35,15:20,7:15,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4208 chr5 101726075 . C CAATAATAAT 0 PASS DP=49;GPV=1;SPV=0.030143;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,8:9,6:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4209 chr5 102050808 . C A 0 PASS DP=32;GPV=1;SPV=0.023031;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,7:9,3:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4210 chr5 102207704 . C CAA 0 PASS DP=42;GPV=1;SPV=0.037585;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,9:11,5:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4211 chr5 102931869 . C T 0 PASS DP=53;GPV=1;SPV=0.0067248;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:24,10:10,3:14,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4212 chr5 103997929 . C T 0 PASS DP=65;GPV=1;SPV=0.026779;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:33,7:12,3:21,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4213 chr5 104725776 . C A 0 PASS DP=65;GPV=1;SPV=9.2183e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:19,15:8,8:11,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4214 chr5 106207402 . T A 0 PASS DP=68;GPV=1;SPV=0.0019104;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:27,9:10,4:17,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4215 chr5 106249012 . T TGCTTCCTACCA 0 PASS DP=44;GPV=1;SPV=0.030178;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,10:11,6:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4216 chr5 107131111 . A T 0 PASS DP=59;GPV=1;SPV=0.072765;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:17,4:9,2:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4217 chr5 108343911 . C A 0 PASS DP=60;GPV=1;SPV=0.00037649;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:21,11:11,7:10,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4218 chr5 110191516 . CT C 0 PASS DP=23;GPV=1;SPV=0.080745;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:8,2:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4219 chr5 110470635 . G T 0 PASS DP=78;GPV=1;SPV=0.0060413;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:37,9:22,3:15,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4220 chr5 111576719 . T C 0 PASS DP=24;GPV=1;SPV=0.12846;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:8,1:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4221 chr5 114339631 . C G 0 PASS DP=66;GPV=1;SPV=0.0018313;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:24,8:14,4:10,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4222 chr5 114690125 . T A 0 PASS DP=72;GPV=1;SPV=2.0437e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:23,14:14,7:9,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4223 chr5 115361420 . CTTTGCA C 0 PASS DP=69;GPV=1;SPV=0.001258;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:24,8:16,2:8,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4224 chr5 117189659 . T TAAA 0 PASS DP=58;GPV=1;SPV=0.0059628;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:18,11:6,6:12,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4225 chr5 118178397 . A ATTT 0 PASS DP=26;GPV=1;SPV=0.024499;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,9:5,8:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4226 chr5 119732025 . G GACACAC 0 PASS DP=41;GPV=1;SPV=0.0094953;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:7,8:5,2:2,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4227 chr5 120184382 . C CA 0 PASS DP=39;GPV=1;SPV=0.046295;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,9:7,7:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4228 chr5 121632513 . CAAA C 0 PASS DP=33;GPV=1;SPV=0.046407;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:7,6:4,5:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4229 chr5 121663508 . G A 0 PASS DP=69;GPV=1;SPV=0.00091899;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:28,11:15,6:13,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4230 chr5 121705429 . AGG A 0 PASS DP=27;GPV=1;SPV=0.13561;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:10,2:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4231 chr5 122598863 . A C 0 PASS DP=60;GPV=1;SPV=1.458e-06;SS=2;SSC=58;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:14,15:8,8:6,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4232 chr5 123089192 . T A 0 PASS DP=24;GPV=1;SPV=0.055138;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,4:3,2:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4233 chr5 123237435 . T A 0 PASS DP=38;GPV=1;SPV=0.23776;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:13,2:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4234 chr5 123237436 . C T 0 PASS DP=38;GPV=1;SPV=0.23776;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:13,2:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4235 chr5 123743329 . G A 0 PASS DP=45;GPV=1;SPV=0.013751;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:17,11:8,7:9,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4236 chr5 123935002 . A G 0 PASS DP=48;GPV=1;SPV=0.037117;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:21,10:9,3:12,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4237 chr5 124094349 . CATATATATATATATATATAT C 0 PASS DP=19;GPV=1;SPV=0.051282;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,4:2,2:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4238 chr5 124662790 . T C 0 PASS DP=69;GPV=1;SPV=0.0024929;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:30,10:17,6:13,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4239 chr5 124762700 . C CT 0 PASS DP=35;GPV=1;SPV=0.0053523;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:9,7:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4240 chr5 125196155 . C G 0 PASS DP=48;GPV=1;SPV=0.048897;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:19,7:12,3:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4241 chr5 126164850 . GATAT G 0 PASS DP=40;GPV=1;SPV=0.042986;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:3,8:1,5:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4242 chr5 126270760 . CAAT C 0 PASS DP=77;GPV=1;SPV=0.038208;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:34,8:17,4:17,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4243 chr5 126543964 . C CT 0 PASS DP=52;GPV=1;SPV=0.0033619;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:19,9:7,6:12,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4244 chr5 127828763 . C T 0 PASS DP=54;GPV=1;SPV=0.00015222;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:15,22:6,11:9,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4245 chr5 128000737 . C CTT 0 PASS DP=28;GPV=1;SPV=0.11624;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:8,3:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4246 chr5 128897457 . GATTAGAACGCTCA G 0 PASS DP=49;GPV=1;SPV=0.0027601;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:14,14:11,8:3,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4247 chr5 129891250 . A C 0 PASS DP=64;GPV=1;SPV=0.00010804;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:21,12:9,7:12,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4248 chr5 130113113 . T A 0 PASS DP=67;GPV=1;SPV=0.0076861;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:27,19:12,9:15,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4249 chr5 130258668 . T TA 0 PASS DP=58;GPV=1;SPV=0.042491;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:19,7:8,6:11,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4250 chr5 130772958 . AAAT A 0 PASS DP=36;GPV=1;SPV=0.17449;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:11,1:10,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4251 chr5 130772965 . GGA G 0 PASS DP=29;GPV=1;SPV=0.15775;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,5:10,2:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4252 chr5 130942245 . G T 0 PASS DP=61;GPV=1;SPV=0.15761;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:20,1:15,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4253 chr5 131054508 . CAAAAAAAAAAA C 0 PASS DP=40;GPV=1;SPV=0.017609;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:8,4:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4254 chr5 131073212 . G C 0 PASS DP=49;GPV=1;SPV=0.042462;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:24,6:8,1:16,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4255 chr5 131292921 . A AC 0 PASS DP=33;GPV=1;SPV=0.024256;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:7,10:2,6:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4256 chr5 131521840 . TACACACACACACACACACAC T 0 PASS DP=32;GPV=1;SPV=0.011229;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,9:7,4:2,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4257 chr5 132351276 . C A 0 PASS DP=58;GPV=1;SPV=0.00037187;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:20,11:7,3:13,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4258 chr5 132473012 . T TA 0 PASS DP=26;GPV=1;SPV=0.0054137;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:1,10:1,9:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4259 chr5 132611705 . TA T 0 PASS DP=37;GPV=1;SPV=0.010569;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:12,12:7,7:5,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4260 chr5 132673903 . G T 0 PASS DP=66;GPV=1;SPV=0.00030577;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:22,10:10,4:12,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4261 chr5 133625829 . T A 0 PASS DP=42;GPV=1;SPV=0.11627;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,4:12,3:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4262 chr5 134518582 . T TA 0 PASS DP=26;GPV=1;SPV=0.048379;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:6,4:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4263 chr5 134692057 . C CT 0 PASS DP=36;GPV=1;SPV=0.0035559;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:8,10:5,7:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4264 chr5 134906194 . A ATTT 0 PASS DP=22;GPV=1;SPV=0.045113;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:5,2:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4265 chr5 138120230 . C CTT 0 PASS DP=32;GPV=1;SPV=0.03835;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:3,3:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4266 chr5 138650421 . GA G 0 PASS DP=33;GPV=1;SPV=0.041917;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,9:10,7:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4267 chr5 139233816 . CA C 0 PASS DP=27;GPV=1;SPV=0.040959;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:1,9:1,8:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4268 chr5 139560199 . AT A 0 PASS DP=37;GPV=1;SPV=0.018564;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:5,6:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4269 chr5 139701878 . G T 0 PASS DP=50;GPV=1;SPV=0.04277;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:26,7:15,3:11,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4270 chr5 140178441 . CTT C 0 PASS DP=25;GPV=1;SPV=0.020229;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,7:2,4:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4271 chr5 140584909 . A AT 0 PASS DP=35;GPV=1;SPV=0.011765;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:11,11:5,7:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4272 chr5 140838081 . T A 0 PASS DP=48;GPV=1;SPV=0.23529;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:7,2:4,1:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4273 chr5 141462116 . C G 0 PASS DP=76;GPV=1;SPV=5.9715e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:25,12:18,6:7,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4274 chr5 141712256 . G GT 0 PASS DP=51;GPV=1;SPV=0.011195;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:23,9:12,6:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4275 chr5 141840617 . G A 0 PASS DP=58;GPV=1;SPV=0.035545;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:13,8:4,1:9,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4276 chr5 142188567 . AGGAAG A 0 PASS DP=36;GPV=1;SPV=0.030844;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:10,3:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4277 chr5 142439845 . C T 0 PASS DP=72;GPV=1;SPV=6.4422e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:27,16:11,6:16,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4278 chr5 143945762 . T C 0 PASS DP=69;GPV=1;SPV=3.9123e-07;SS=2;SSC=64;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:17,17:5,6:12,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4279 chr5 144847159 . T TTTTATTTA 0 PASS DP=49;GPV=1;SPV=0.053256;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:27,10:7,4:20,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4280 chr5 145340776 . T C 0 PASS DP=40;GPV=1;SPV=0.46667;SS=2;SSC=3;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:5,2:3,1:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4281 chr5 146372283 . A T 0 PASS DP=53;GPV=1;SPV=0.095044;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:27,5:19,3:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4282 chr5 147086428 . C CT 0 PASS DP=25;GPV=1;SPV=0.11647;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:7,2:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4283 chr5 147214520 . GTCTTTCTTTCTTTCTTTCTT G 0 PASS DP=50;GPV=1;SPV=0.10147;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:22,7:11,5:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4284 chr5 147840621 . A C 0 PASS DP=31;GPV=1;SPV=0.040248;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:8,6:4,1:4,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4285 chr5 147873470 . GGAAATAAGGGATTGGGGCACA G 0 PASS DP=64;GPV=1;SPV=0.00060477;SS=2;SSC=32;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:20,18:11,11:9,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4286 chr5 148778095 . T TTCTCTC 0 PASS DP=40;GPV=1;SPV=0.016422;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,9:7,6:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4287 chr5 149127910 . C G 0 PASS DP=69;GPV=1;SPV=0.0012545;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:30,12:9,4:21,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4288 chr5 149939140 . C G 0 PASS DP=61;GPV=1;SPV=0.00010305;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:21,14:7,7:14,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4289 chr5 151282890 . T C 0 PASS DP=71;GPV=1;SPV=0.053387;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:29,4:12,1:17,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4290 chr5 152415757 . C T 0 PASS DP=48;GPV=1;SPV=0.0002749;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:16,15:5,5:11,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4291 chr5 153607068 . T TATATATATATATAA 0 PASS DP=42;GPV=1;SPV=0.02545;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,7:9,4:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4292 chr5 153826411 . CAAA C 0 PASS DP=31;GPV=1;SPV=0.20399;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,4:9,2:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4293 chr5 153854713 . T C 0 PASS DP=56;GPV=1;SPV=0.079112;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:19,4:10,3:9,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4294 chr5 154138321 . CA C 0 PASS DP=37;GPV=1;SPV=0.028014;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:11,7:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4295 chr5 154149107 . G A 0 PASS DP=39;GPV=1;SPV=0.0061538;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:5,4:3,3:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4296 chr5 154452729 . T G 0 PASS DP=66;GPV=1;SPV=0.036325;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:30,5:13,2:17,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4297 chr5 154452743 . A AGTTCTTCCCACT 0 PASS DP=58;GPV=1;SPV=0.018288;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:24,6:12,3:12,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4298 chr5 155062654 . CT C 0 PASS DP=22;GPV=1;SPV=0.038921;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,5:5,4:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4299 chr5 156841324 . A C 0 PASS DP=62;GPV=1;SPV=0.016974;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:29,7:15,4:14,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4300 chr5 156841325 . A C 0 PASS DP=60;GPV=1;SPV=0.0091986;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:27,8:15,5:12,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4301 chr5 156841326 . A G 0 PASS DP=53;GPV=1;SPV=0.0089005;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:23,8:9,5:14,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4302 chr5 156841327 . C CCT 0 PASS DP=62;GPV=1;SPV=0.020934;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:30,7:15,4:15,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4303 chr5 157054190 . C CA 0 PASS DP=38;GPV=1;SPV=0.024846;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,7:7,5:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4304 chr5 157526173 . T C 0 PASS DP=65;GPV=1;SPV=0.069705;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:34,5:28,3:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4305 chr5 157677668 . AAG A 0 PASS DP=47;GPV=1;SPV=0.0038641;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:13,12:3,5:10,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4306 chr5 158866861 . A G 0 PASS DP=19;GPV=1;SPV=0.10714;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:1,2:1,1:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4307 chr5 159466785 . TACTGCTTATATATATATAA T 0 PASS DP=48;GPV=1;SPV=0.05461;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:9,3:11,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4308 chr5 160486276 . CTTTAGA C 0 PASS DP=37;GPV=1;SPV=0.0056305;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:14,13:7,5:7,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4309 chr5 160693403 . A AAC 0 PASS DP=56;GPV=1;SPV=0.02692;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:21,12:15,5:6,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4310 chr5 160898706 . T G 0 PASS DP=66;GPV=1;SPV=0.00056465;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:28,15:17,5:11,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4311 chr5 161033663 . C T 0 PASS DP=19;GPV=1;SPV=0.05418;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,4:6,3:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4312 chr5 161463551 . T A 0 PASS DP=20;GPV=1;SPV=0.21053;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:6,1:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4313 chr5 162065825 . T TACACACACAC 0 PASS DP=44;GPV=1;SPV=0.017445;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:10,6:5,5:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4314 chr5 163244240 . G A 0 PASS DP=46;GPV=1;SPV=0.0018791;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,8:10,5:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4315 chr5 163405314 . C CT 0 PASS DP=43;GPV=1;SPV=0.0018699;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:10,12:3,9:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4316 chr5 163617971 . CTT C 0 PASS DP=35;GPV=1;SPV=0.046816;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,8:3,1:9,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4317 chr5 164970464 . G T 0 PASS DP=71;GPV=1;SPV=4.0661e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:26,17:11,6:15,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4318 chr5 165094976 . A T 0 PASS DP=56;GPV=1;SPV=0.051138;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:18,5:7,2:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4319 chr5 165315188 . A G 0 PASS DP=66;GPV=1;SPV=2.2597e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:23,22:17,11:6,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4320 chr5 165653669 . T A 0 PASS DP=36;GPV=1;SPV=0.049571;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,8:7,5:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4321 chr5 165919434 . C T 0 PASS DP=70;GPV=1;SPV=1.2609e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:24,19:11,7:13,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4322 chr5 166057391 . C CAAAAAAAAA 0 PASS DP=29;GPV=1;SPV=0.083011;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,5:3,4:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4323 chr5 166683568 . ATAT A 0 PASS DP=49;GPV=1;SPV=0.074732;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,5:16,3:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4324 chr5 166688864 . CATAT C 0 PASS DP=32;GPV=1;SPV=0.02087;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,6:5,5:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4325 chr5 167834640 . CT C 0 PASS DP=26;GPV=1;SPV=0.045217;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,6:7,5:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4326 chr5 168036644 . ATAT A 0 PASS DP=63;GPV=1;SPV=0.11947;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:9,4:5,2:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4327 chr5 168165640 . CCCCCCCAA C 0 PASS DP=32;GPV=1;SPV=0.013986;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:14:0,3:0,0:0,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4328 chr5 168250104 . GTGGATGGATGGATGGA G 0 PASS DP=56;GPV=1;SPV=0.0014108;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:14,11:10,6:4,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4329 chr5 169202241 . T TAAATA 0 PASS DP=58;GPV=1;SPV=0.025432;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:25,12:10,6:15,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4330 chr5 169635867 . ATGTATG A 0 PASS DP=63;GPV=1;SPV=0.15343;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:36,4:16,3:20,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4331 chr5 169972586 . T TA 0 PASS DP=46;GPV=1;SPV=0.10105;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:16,5:5,2:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4332 chr5 170589783 . A G 0 PASS DP=49;GPV=1;SPV=0.06523;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,4:8,3:11,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4333 chr5 170599624 . GATGGACCTAGGGGTGGGGAAGAGCGAGAAGTTCCCGTGCA G 0 PASS DP=48;GPV=1;SPV=0.011304;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,8:9,4:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4334 chr5 171502913 . AGT A 0 PASS DP=38;GPV=1;SPV=0.046295;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,9:6,3:8,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4335 chr5 171878593 . A T 0 PASS DP=42;GPV=1;SPV=0.053471;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:9,2:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4336 chr5 173699024 . T C 0 PASS DP=34;GPV=1;SPV=0.041789;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:5,3:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4337 chr5 173937019 . CTT C 0 PASS DP=37;GPV=1;SPV=0.028534;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,8:7,4:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4338 chr5 174883446 . C T 0 PASS DP=58;GPV=1;SPV=0.0072434;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:25,8:13,4:12,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4339 chr5 175914839 . C G 0 PASS DP=79;GPV=1;SPV=0.011639;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:32,12:19,5:13,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4340 chr5 175941300 . T C 0 PASS DP=76;GPV=1;SPV=0.037221;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:34,11:14,3:20,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4341 chr5 176055594 . T C 0 PASS DP=93;GPV=1;SPV=0.014566;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:45,11:24,4:21,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4342 chr5 176489248 . T C 0 PASS DP=30;GPV=1;SPV=0.04735;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:10,12:5,6:5,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4343 chr5 176591961 . G A 0 PASS DP=33;GPV=1;SPV=0.014656;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,8:8,3:5,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4344 chr5 177695953 . TGGC T 0 PASS DP=34;GPV=1;SPV=0.15275;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:8,2:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4345 chr5 177891695 . A G 0 PASS DP=95;GPV=1;SPV=0.041141;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:32,9:13,4:19,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4346 chr5 178034774 . A G 0 PASS DP=43;GPV=1;SPV=0.083867;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:15,3:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4347 chr5 178039933 . A G 0 PASS DP=64;GPV=1;SPV=0.046272;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:26,9:13,5:13,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4348 chr5 178195604 . C CA 0 PASS DP=27;GPV=1;SPV=0.07913;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:7,3:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4349 chr5 178358268 . GTA G 0 PASS DP=45;GPV=1;SPV=0.049619;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,7:11,3:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4350 chr5 180194002 . G GTGTTTGTT 0 PASS DP=57;GPV=1;SPV=2.2901e-05;SS=2;SSC=46;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:5,19:3,9:2,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4351 chr5 180945995 . A T 0 PASS DP=49;GPV=1;SPV=0.27778;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:3,2:2,1:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4352 chr5 181269984 . A G 0 PASS DP=21;GPV=1;SPV=0.063246;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:6,2:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4353 chr5 181475428 . G T 0 PASS DP=106;GPV=1;SPV=0.016736;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:65:57,8:21,5:36,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4354 chr6 469644 . GTCTCCCTCC G 0 PASS DP=18;GPV=1;SPV=0.10294;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:6,3:4,2:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4355 chr6 1037543 . ATGTT A 0 PASS DP=53;GPV=1;SPV=0.0001145;SS=2;SSC=39;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:12,18:5,9:7,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4356 chr6 2357977 . C CTT 0 PASS DP=19;GPV=1;SPV=0.041176;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:4,3:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4357 chr6 4103893 . CT C 0 PASS DP=36;GPV=1;SPV=0.00052709;SS=2;SSC=32;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:5,10:1,6:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4358 chr6 4923902 . A C 0 PASS DP=28;GPV=1;SPV=0.1;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:14:0,2:0,0:0,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4359 chr6 5539382 . G T 0 PASS DP=27;GPV=1;SPV=0.037681;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,7:4,3:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4360 chr6 5555755 . C G 0 PASS DP=61;GPV=1;SPV=3.6248e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,10:9,4:6,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4361 chr6 6590118 . TAA T 0 PASS DP=32;GPV=1;SPV=0.012749;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,6:4,5:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4362 chr6 7349944 . AAAAGAAAG A 0 PASS DP=27;GPV=1;SPV=0.015866;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:7,10:1,3:6,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4363 chr6 7469157 . C CT 0 PASS DP=22;GPV=1;SPV=0.031623;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,6:2,5:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4364 chr6 7704987 . C CT 0 PASS DP=28;GPV=1;SPV=0.00035596;SS=2;SSC=34;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:5,10:4,9:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4365 chr6 7958136 . C CTTT 0 PASS DP=18;GPV=1;SPV=0.15909;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,3:2,2:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4366 chr6 9010172 . A ATTT 0 PASS DP=38;GPV=1;SPV=0.0059497;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:7,8:3,4:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4367 chr6 10035301 . ATATATG A 0 PASS DP=34;GPV=1;SPV=0.029433;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:7,1:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4368 chr6 10087104 . C CA 0 PASS DP=40;GPV=1;SPV=0.046407;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:7,6:4,4:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4369 chr6 10765440 . ATTTT A 0 PASS DP=27;GPV=1;SPV=0.21429;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:7,6:5,5:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4370 chr6 11935537 . C T 0 PASS DP=51;GPV=1;SPV=0.021554;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,5:6,3:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4371 chr6 13025671 . T TTGTG 0 PASS DP=45;GPV=1;SPV=0.0017126;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:13,13:6,10:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4372 chr6 13762086 . C CTT 0 PASS DP=26;GPV=1;SPV=0.097744;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,4:6,2:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4373 chr6 13793125 . C CA 0 PASS DP=18;GPV=1;SPV=0.045455;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:1,6:0,5:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4374 chr6 13813884 . ATGCCGG A 0 PASS DP=70;GPV=1;SPV=4.5018e-06;SS=2;SSC=53;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:20,15:9,8:11,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4375 chr6 13813894 . C A 0 PASS DP=73;GPV=1;SPV=7.1318e-07;SS=2;SSC=61;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:18,15:10,8:8,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4376 chr6 13821384 . C A 0 PASS DP=70;GPV=1;SPV=7.525e-07;SS=2;SSC=61;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:16,14:11,5:5,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4377 chr6 14147038 . A G 0 PASS DP=47;GPV=1;SPV=0.008413;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:4,7:0,5:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4378 chr6 15064967 . C CAAAAAA 0 PASS DP=30;GPV=1;SPV=0.029412;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:5,5:2,4:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4379 chr6 15120858 . A C 0 PASS DP=50;GPV=1;SPV=0.15152;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:3,2:0,0:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4380 chr6 15254897 . C T 0 PASS DP=54;GPV=1;SPV=3.2171e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:13,16:6,5:7,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4381 chr6 16480154 . C CAA 0 PASS DP=24;GPV=1;SPV=0.006993;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:2,5:1,4:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4382 chr6 16920634 . AACACACACACAC A 0 PASS DP=27;GPV=1;SPV=0.0068111;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:5,7:5,1:0,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4383 chr6 17083187 . T TACAC 0 PASS DP=38;GPV=1;SPV=0.001857;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,8:3,2:3,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4384 chr6 17474185 . CTT C 0 PASS DP=21;GPV=1;SPV=0.0039295;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:4,8:2,6:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4385 chr6 17587037 . T TAC 0 PASS DP=52;GPV=1;SPV=0.0054797;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,9:14,7:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4386 chr6 17781623 . G GTT 0 PASS DP=33;GPV=1;SPV=0.0061587;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,7:3,4:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4387 chr6 17934787 . CA C 0 PASS DP=45;GPV=1;SPV=0.040919;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,9:12,2:7,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4388 chr6 19972904 . CTT C 0 PASS DP=23;GPV=1;SPV=0.037267;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:4,3:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4389 chr6 20437918 . G C 0 PASS DP=56;GPV=1;SPV=8.868e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:9,6:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4390 chr6 20797760 . C CTTTATTTTAT 0 PASS DP=43;GPV=1;SPV=0.015843;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,6:6,5:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4391 chr6 20988182 . A ATGTGTGTG 0 PASS DP=22;GPV=1;SPV=0.15385;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:5,6:2,4:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4392 chr6 22379075 . A C 0 PASS DP=63;GPV=1;SPV=0.039588;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:29,5:16,4:13,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4393 chr6 22481638 . A G 0 PASS DP=33;GPV=1;SPV=0.047386;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:23:3,10:2,7:1,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4394 chr6 22885876 . A AGTGT 0 PASS DP=31;GPV=1;SPV=0.0031609;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,7:3,4:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4395 chr6 23797596 . A T 0 PASS DP=36;GPV=1;SPV=0.2;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:1,2:0,1:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4396 chr6 23797597 . A T 0 PASS DP=37;GPV=1;SPV=0.14286;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:1,2:0,1:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4397 chr6 24056447 . T TAAGAAAGAAAGA 0 PASS DP=49;GPV=1;SPV=0.041104;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:24,10:10,7:14,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4398 chr6 24442449 . T G 0 PASS DP=19;GPV=1;SPV=0.21053;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:2,1:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4399 chr6 24474946 . C CA 0 PASS DP=35;GPV=1;SPV=0.0019638;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:7,12:3,6:4,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4400 chr6 25022532 . ATTTTTTT A 0 PASS DP=29;GPV=1;SPV=0.031556;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,8:6,4:3,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4401 chr6 26436177 . CT C 0 PASS DP=51;GPV=1;SPV=0.015259;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:25,12:18,10:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4402 chr6 27101011 . C G 0 PASS DP=54;GPV=1;SPV=0.047135;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:29,7:20,4:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4403 chr6 27101021 . A AC 0 PASS DP=45;GPV=1;SPV=0.21118;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:19,2:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4404 chr6 27101029 . G GAT 0 PASS DP=47;GPV=1;SPV=0.048435;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:22,7:16,4:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4405 chr6 27561940 . T TTTTG 0 PASS DP=45;GPV=1;SPV=0.17876;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,4:7,1:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4406 chr6 27733493 . G GTTTT 0 PASS DP=43;GPV=1;SPV=0.017964;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:15,10:9,6:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4407 chr6 28176823 . T TA 0 PASS DP=26;GPV=1;SPV=0.066403;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,5:6,3:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4408 chr6 28594345 . C G 0 PASS DP=80;GPV=1;SPV=0.0011729;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:38,14:20,8:18,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4409 chr6 28872465 . T A 0 PASS DP=41;GPV=1;SPV=0.021382;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,7:13,4:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4410 chr6 28953876 . C T 0 PASS DP=70;GPV=1;SPV=0.039879;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:42,10:21,5:21,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4411 chr6 29444735 . A T 0 PASS DP=84;GPV=1;SPV=0.00097272;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:60:42,18:24,9:18,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4412 chr6 30082997 . T C 0 PASS DP=45;GPV=1;SPV=0.029887;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:19,12:10,4:9,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4413 chr6 30333357 . T G 0 PASS DP=42;GPV=1;SPV=0.043889;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,6:9,4:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4414 chr6 30928031 . GTT G 0 PASS DP=39;GPV=1;SPV=0.12367;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:22,7:18,4:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4415 chr6 31807582 . C CAA 0 PASS DP=52;GPV=1;SPV=0.0066159;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:13,9:12,8:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4416 chr6 32135286 . T TAAAAA 0 PASS DP=29;GPV=1;SPV=0.10021;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:8,3:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4417 chr6 32242474 . C T 0 PASS DP=47;GPV=1;SPV=0.031008;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,5:7,3:12,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4418 chr6 32242510 . T TTTCC 0 PASS DP=39;GPV=1;SPV=0.0039984;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:13,9:7,5:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4419 chr6 32632476 . G T 0 PASS DP=44;GPV=1;SPV=0.044074;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,8:8,6:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4420 chr6 32746007 . C A 0 PASS DP=79;GPV=1;SPV=0.082592;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:47,6:17,1:30,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4421 chr6 32746050 . C T 0 PASS DP=78;GPV=1;SPV=0.10036;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:45,5:23,1:22,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4422 chr6 33553143 . C CAAAAA 0 PASS DP=34;GPV=1;SPV=0.063246;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:8,8:5,7:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4423 chr6 33767012 . A ACACACACG 0 PASS DP=57;GPV=1;SPV=0.090199;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:27,8:14,4:13,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4424 chr6 33847578 . A G 0 PASS DP=80;GPV=1;SPV=0.030844;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:14,5:8,2:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4425 chr6 33978334 . C T 0 PASS DP=89;GPV=1;SPV=5.8714e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:36,16:15,8:21,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4426 chr6 33989506 . T TTCTCTCTCTCTC 0 PASS DP=47;GPV=1;SPV=0.0077942;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:19,9:11,5:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4427 chr6 34272585 . G A 0 PASS DP=83;GPV=1;SPV=2.4738e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:33,20:15,9:18,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4428 chr6 34428164 . C CAAAAAAAAAAAAA 0 PASS DP=41;GPV=1;SPV=0.29987;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:26,4:14,3:12,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4429 chr6 35266836 . C CT 0 PASS DP=37;GPV=1;SPV=0.020315;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:13,13:5,4:8,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4430 chr6 35415778 . C CTGTGTGTGTGTGTGTGTGTGTGTGTGTG 0 PASS DP=45;GPV=1;SPV=0.13907;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:26,5:19,3:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4431 chr6 35483711 . G A 0 PASS DP=75;GPV=1;SPV=0.054338;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:15,3:18,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4432 chr6 36282044 . G A 0 PASS DP=32;GPV=1;SPV=0.16643;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:12,3:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4433 chr6 36504898 . CA C 0 PASS DP=29;GPV=1;SPV=0.0048547;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,9:7,5:2,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4434 chr6 36802217 . CAA C 0 PASS DP=40;GPV=1;SPV=0.031109;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,7:9,6:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4435 chr6 36943963 . G A 0 PASS DP=52;GPV=1;SPV=0.35509;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:28,4:17,1:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4436 chr6 37181183 . A T 0 PASS DP=38;GPV=1;SPV=0.17137;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:13,3:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4437 chr6 38230495 . CAAAAA C 0 PASS DP=25;GPV=1;SPV=0.28173;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,5:5,4:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4438 chr6 39149355 . TCACACACA T 0 PASS DP=26;GPV=1;SPV=0.16725;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,4:4,2:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4439 chr6 39806855 . AG A 0 PASS DP=63;GPV=1;SPV=0.002106;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:24,24:13,13:11,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4440 chr6 40050106 . C T 0 PASS DP=78;GPV=1;SPV=0.0091964;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:39,9:21,4:18,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4441 chr6 40636965 . A ATG 0 PASS DP=44;GPV=1;SPV=0.06862;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:24,7:13,3:11,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4442 chr6 40636985 . ATG A 0 PASS DP=39;GPV=1;SPV=0.22567;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:25,6:14,1:11,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4443 chr6 40636990 . A AACATATATTT 0 PASS DP=45;GPV=1;SPV=0.37843;SS=2;SSC=4;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:23,4:14,1:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4444 chr6 40674550 . T C 0 PASS DP=67;GPV=1;SPV=0.011294;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:14,7:6,4:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4445 chr6 41663309 . T TTGTG 0 PASS DP=46;GPV=1;SPV=0.028335;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:10,7:3,2:7,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4446 chr6 42206237 . AAG A 0 PASS DP=61;GPV=1;SPV=0.03734;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:35,13:11,7:24,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4447 chr6 42290741 . CTTT C 0 PASS DP=30;GPV=1;SPV=0.0041535;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:9,13:4,4:5,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4448 chr6 42507575 . A ATTTTTTTTT 0 PASS DP=43;GPV=1;SPV=0.2122;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:11,1:14,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4449 chr6 43294350 . T TCAC 0 PASS DP=34;GPV=1;SPV=0.25735;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:19,3:8,2:11,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4450 chr6 43372091 . T G 0 PASS DP=41;GPV=1;SPV=0.017734;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:13,10:9,6:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4451 chr6 43567150 . G C 0 PASS DP=85;GPV=1;SPV=0.00046557;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:38,14:23,8:15,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4452 chr6 43738634 . G GT 0 PASS DP=27;GPV=1;SPV=0.18814;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,4:9,1:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4453 chr6 43935395 . T C 0 PASS DP=80;GPV=1;SPV=0.042003;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:47,8:26,6:21,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4454 chr6 44391089 . C CAT 0 PASS DP=54;GPV=1;SPV=0.031062;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:22,5:10,2:12,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4455 chr6 44606417 . C A 0 PASS DP=69;GPV=1;SPV=0.00091899;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:28,11:15,3:13,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4456 chr6 44871588 . C T 0 PASS DP=51;GPV=1;SPV=0.15731;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:25,3:14,1:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4457 chr6 45866420 . T C 0 PASS DP=48;GPV=1;SPV=0.22017;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:31,5:16,1:15,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4458 chr6 46127836 . A T 0 PASS DP=68;GPV=1;SPV=2.5202e-07;SS=2;SSC=65;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:18,23:7,12:11,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4459 chr6 46142392 . A T 0 PASS DP=48;GPV=1;SPV=0.0045935;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,10:10,2:10,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4460 chr6 46831841 . C A 0 PASS DP=65;GPV=1;SPV=0.011071;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:35,14:18,6:17,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4461 chr6 47287307 . CAAAAAAA C 0 PASS DP=32;GPV=1;SPV=0.035523;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:6,8:3,6:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4462 chr6 48147451 . T TAAA 0 PASS DP=42;GPV=1;SPV=0.014654;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:14,15:12,14:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4463 chr6 48447033 . TA T 0 PASS DP=52;GPV=1;SPV=0.029565;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,9:11,4:11,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4464 chr6 48993875 . G GATATATATAT 0 PASS DP=36;GPV=1;SPV=0.34759;SS=2;SSC=4;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:12,2:12,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4465 chr6 49226502 . A AT 0 PASS DP=45;GPV=1;SPV=0.025631;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:18,13:14,8:4,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4466 chr6 49394006 . T A 0 PASS DP=77;GPV=1;SPV=0.0007826;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:33,12:14,7:19,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4467 chr6 49394007 . C A 0 PASS DP=71;GPV=1;SPV=0.0011981;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:31,12:13,7:18,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4468 chr6 49394008 . C A 0 PASS DP=72;GPV=1;SPV=0.0009984;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:31,12:14,7:17,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4469 chr6 51507491 . AT A 0 PASS DP=52;GPV=1;SPV=0.035177;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:24,12:11,8:13,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4470 chr6 51702201 . C T 0 PASS DP=48;GPV=1;SPV=0.18959;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:30,5:11,2:19,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4471 chr6 51807459 . ATAT A 0 PASS DP=39;GPV=1;SPV=0.057037;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:10,4:7,3:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4472 chr6 52682596 . G T 0 PASS DP=64;GPV=1;SPV=0.03619;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:34,7:19,5:15,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4473 chr6 53104723 . G GTT 0 PASS DP=37;GPV=1;SPV=0.038406;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:8,13:6,11:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4474 chr6 53409065 . C CTTTTT 0 PASS DP=27;GPV=1;SPV=0.12913;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,5:4,4:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4475 chr6 53454593 . T TCACACACACACACACACACACA 0 PASS DP=38;GPV=1;SPV=0.004119;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:7,11:5,8:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4476 chr6 54200624 . T G 0 PASS DP=62;GPV=1;SPV=0.058259;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:31,5:15,2:16,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4477 chr6 54219369 . AC A 0 PASS DP=44;GPV=1;SPV=0.23178;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:14,1:13,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4478 chr6 54616580 . T G 0 PASS DP=78;GPV=1;SPV=0.047777;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:42,6:19,4:23,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4479 chr6 55539859 . GAAGAAAGAAAGA G 0 PASS DP=30;GPV=1;SPV=0.011166;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,9:4,5:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4480 chr6 56053862 . A AGT 0 PASS DP=40;GPV=1;SPV=0.024928;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:15,9:9,5:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4481 chr6 56219216 . C CAA 0 PASS DP=39;GPV=1;SPV=0.084679;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,5:14,4:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4482 chr6 56917018 . G A 0 PASS DP=21;GPV=1;SPV=0.02381;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:11:0,4:0,2:0,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4483 chr6 57866875 . C T 0 PASS DP=70;GPV=1;SPV=0.036016;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:32,5:15,1:17,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4484 chr6 58040371 . A G 0 PASS DP=65;GPV=1;SPV=0.00086667;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:28,14:16,5:12,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4485 chr6 58452068 . A T 0 PASS DP=50;GPV=1;SPV=7.269e-07;SS=2;SSC=61;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:10,18:8,11:2,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4486 chr6 58724009 . C A 0 PASS DP=124;GPV=1;SPV=0.00087043;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:72:49,23:35,18:14,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4487 chr6 59314063 . G T 0 PASS DP=17;GPV=1;SPV=0.12353;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:6,3:0,0:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4488 chr6 59343156 . T A 0 PASS DP=35;GPV=1;SPV=0.13093;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:12,3:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4489 chr6 60230066 . G A 0 PASS DP=31;GPV=1;SPV=0.025986;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:10,10:10,9:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4490 chr6 60511738 . CT C 0 PASS DP=29;GPV=1;SPV=0.028886;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:9,10:4,6:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4491 chr6 61540793 . GTATATATATATATATATATATATATA G 0 PASS DP=22;GPV=1;SPV=0.004644;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:14:3,11:2,4:1,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4492 chr6 62863532 . TCC T 0 PASS DP=31;GPV=1;SPV=0.013985;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:9,11:4,3:5,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4493 chr6 63297354 . C CA 0 PASS DP=30;GPV=1;SPV=0.16835;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,6:10,5:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4494 chr6 63654889 . C CTT 0 PASS DP=32;GPV=1;SPV=0.15499;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,5:9,2:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4495 chr6 64045383 . G GTTTATTTTAT 0 PASS DP=61;GPV=1;SPV=0.04561;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:10,2:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4496 chr6 64107843 . C A 0 PASS DP=65;GPV=1;SPV=6.2242e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:22,14:14,7:8,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4497 chr6 64542322 . C A 0 PASS DP=63;GPV=1;SPV=0.00067755;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:24,11:11,5:13,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4498 chr6 64585065 . A T 0 PASS DP=70;GPV=1;SPV=7.8434e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:23,12:13,9:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4499 chr6 65306938 . A G 0 PASS DP=36;GPV=1;SPV=0.14093;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:11,3:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4500 chr6 69031079 . CTCT C 0 PASS DP=25;GPV=1;SPV=0.12846;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,4:3,2:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4501 chr6 69691147 . C CTT 0 PASS DP=53;GPV=1;SPV=0.041513;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,7:10,6:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4502 chr6 70526750 . T C 0 PASS DP=31;GPV=1;SPV=0.19021;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:8,2:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4503 chr6 72102499 . AC A 0 PASS DP=64;GPV=1;SPV=0.0039481;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,6:13,3:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4504 chr6 72449805 . AT A 0 PASS DP=30;GPV=1;SPV=0.14143;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:7,2:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4505 chr6 72873552 . C T 0 PASS DP=74;GPV=1;SPV=0.0018434;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:35,13:18,10:17,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4506 chr6 76401975 . GT G 0 PASS DP=35;GPV=1;SPV=0.021615;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,7:7,5:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4507 chr6 76401982 . T G 0 PASS DP=30;GPV=1;SPV=0.12566;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,6:6,5:10,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4508 chr6 76401989 . T G 0 PASS DP=33;GPV=1;SPV=0.1599;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,6:8,5:11,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4509 chr6 77029361 . GCTTCATCCATGTCCCTGCAAAGGACATGAACT G 0 PASS DP=50;GPV=1;SPV=0.049793;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,8:9,6:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4510 chr6 79860854 . C A 0 PASS DP=59;GPV=1;SPV=0.2008;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:36,4:19,1:17,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4511 chr6 81468123 . A AAT 0 PASS DP=47;GPV=1;SPV=0.047286;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,6:7,1:9,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4512 chr6 81665420 . C A 0 PASS DP=45;GPV=1;SPV=0.0062786;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:19,10:9,9:10,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4513 chr6 82659690 . C G 0 PASS DP=76;GPV=1;SPV=3.3767e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:26,14:16,8:10,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4514 chr6 83277901 . A AAATAATAATAATAATAATAAT 0 PASS DP=29;GPV=1;SPV=0.12771;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,4:1,1:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4515 chr6 84274350 . T C 0 PASS DP=58;GPV=1;SPV=0.0033254;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,6:10,2:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4516 chr6 84310784 . C CA 0 PASS DP=33;GPV=1;SPV=0.045694;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,6:6,5:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4517 chr6 84989434 . T C 0 PASS DP=43;GPV=1;SPV=0.18637;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:22,3:11,2:11,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4518 chr6 87851701 . AG A 0 PASS DP=76;GPV=1;SPV=0.00096289;SS=2;SSC=30;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:26,8:13,3:13,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4519 chr6 88065469 . A G 0 PASS DP=68;GPV=1;SPV=2.5661e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:23,16:12,10:11,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4520 chr6 89043428 . AG A 0 PASS DP=23;GPV=1;SPV=0.089245;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:6,4:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4521 chr6 92442985 . C G 0 PASS DP=57;GPV=1;SPV=0.014243;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:27,8:16,1:11,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4522 chr6 93937173 . C CA 0 PASS DP=60;GPV=1;SPV=0.025866;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:23,13:11,7:12,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4523 chr6 95151289 . C G 0 PASS DP=60;GPV=1;SPV=0.013929;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:27,7:13,4:14,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4524 chr6 95371823 . GTTGTTT G 0 PASS DP=40;GPV=1;SPV=0.064595;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:11,3:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4525 chr6 97192213 . A G 0 PASS DP=70;GPV=1;SPV=0.08973;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:39,5:22,2:17,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4526 chr6 97481994 . CT C 0 PASS DP=23;GPV=1;SPV=0.13684;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:5,3:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4527 chr6 98077054 . G A 0 PASS DP=23;GPV=1;SPV=0.17647;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,7:6,4:1,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4528 chr6 98634212 . A ATTT 0 PASS DP=53;GPV=1;SPV=0.0042118;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:20,15:13,11:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4529 chr6 100608399 . TTA T 0 PASS DP=26;GPV=1;SPV=0.31385;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:15,3:6,1:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4530 chr6 102523047 . G T 0 PASS DP=57;GPV=1;SPV=0.0035421;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:22,8:12,5:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4531 chr6 102933593 . A G 0 PASS DP=64;GPV=1;SPV=0.00082439;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:26,12:15,9:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4532 chr6 103023913 . TAC T 0 PASS DP=56;GPV=1;SPV=0.0033176;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:25,12:17,5:8,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4533 chr6 103023923 . T C 0 PASS DP=54;GPV=1;SPV=0.0054007;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:25,12:17,5:8,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4534 chr6 104186663 . T C 0 PASS DP=47;GPV=1;SPV=0.12525;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:28,6:8,5:20,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4535 chr6 104555966 . T TG 0 PASS DP=35;GPV=1;SPV=0.072149;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,5:8,3:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4536 chr6 104555972 . G C 0 PASS DP=36;GPV=1;SPV=0.1088;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,5:9,3:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4537 chr6 104555973 . T TTCAGGATA 0 PASS DP=33;GPV=1;SPV=0.14404;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,5:9,3:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4538 chr6 104876020 . G A 0 PASS DP=70;GPV=1;SPV=0.0010684;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:29,11:9,3:20,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4539 chr6 106439049 . TG T 0 PASS DP=56;GPV=1;SPV=0.034112;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:27,6:15,1:12,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4540 chr6 106896891 . C CAA 0 PASS DP=43;GPV=1;SPV=0.011004;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:15,14:12,11:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4541 chr6 107532271 . AC A 0 PASS DP=48;GPV=1;SPV=0.14084;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:14,3:12,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4542 chr6 110586974 . C G 0 PASS DP=65;GPV=1;SPV=0.0047824;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:31,11:13,7:18,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4543 chr6 110836012 . CA C 0 PASS DP=38;GPV=1;SPV=0.083396;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,6:18,5:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4544 chr6 111646731 . C CAA 0 PASS DP=38;GPV=1;SPV=0.069231;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:5,7:3,5:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4545 chr6 112673463 . T G 0 PASS DP=62;GPV=1;SPV=0.0051975;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:23,18:14,7:9,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4546 chr6 113484182 . T C 0 PASS DP=36;GPV=1;SPV=0.14093;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:13,3:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4547 chr6 116041678 . G T 0 PASS DP=70;GPV=1;SPV=0.00094527;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:24,12:14,6:10,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4548 chr6 116668868 . T C 0 PASS DP=54;GPV=1;SPV=0.099494;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:12,1:15,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4549 chr6 118085487 . CT C 0 PASS DP=16;GPV=1;SPV=0.23333;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:4,1:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4550 chr6 118310282 . G C 0 PASS DP=60;GPV=1;SPV=4.1076e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:20,17:4,5:16,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4551 chr6 118569343 . A C 0 PASS DP=38;GPV=1;SPV=0.27273;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:4,2:1,1:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4552 chr6 118709532 . C CGTGTGTGTGTGTGTGT 0 PASS DP=29;GPV=1;SPV=0.01373;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,5:1,4:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4553 chr6 119529462 . C A 0 PASS DP=61;GPV=1;SPV=2.9628e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:20,17:12,5:8,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4554 chr6 120099200 . CAA C 0 PASS DP=31;GPV=1;SPV=0.066403;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,5:4,4:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4555 chr6 121044217 . T C 0 PASS DP=63;GPV=1;SPV=8.9122e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:14,25:6,13:8,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4556 chr6 122652309 . T A 0 PASS DP=55;GPV=1;SPV=0.080354;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:16,1:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4557 chr6 124730414 . A C 0 PASS DP=38;GPV=1;SPV=0.012533;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,9:5,5:11,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4558 chr6 125301484 . A ACACACACGCG 0 PASS DP=52;GPV=1;SPV=0.034267;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:19,10:14,5:5,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4559 chr6 127049658 . ATT A 0 PASS DP=30;GPV=1;SPV=0.086845;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:6,2:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4560 chr6 127434577 . C CA 0 PASS DP=29;GPV=1;SPV=0.049667;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,7:9,6:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4561 chr6 128402253 . GTT G 0 PASS DP=72;GPV=1;SPV=0.025525;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:34,10:22,3:12,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4562 chr6 128717438 . T TAA 0 PASS DP=27;GPV=1;SPV=0.0059497;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,8:5,6:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4563 chr6 129718949 . A G 0 PASS DP=44;GPV=1;SPV=0.031869;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:9,3:8,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4564 chr6 131435804 . G C 0 PASS DP=62;GPV=1;SPV=3.2298e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:16,15:8,7:8,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4565 chr6 133279108 . A T 0 PASS DP=65;GPV=1;SPV=2.6849e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:21,15:10,7:11,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4566 chr6 133664412 . T C 0 PASS DP=30;GPV=1;SPV=0.14143;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:0,0:15,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4567 chr6 134155276 . C CA 0 PASS DP=45;GPV=1;SPV=0.041575;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,6:11,4:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4568 chr6 134717115 . CAA C 0 PASS DP=31;GPV=1;SPV=0.00064073;SS=2;SSC=31;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:5,12:1,9:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4569 chr6 135398058 . GT G 0 PASS DP=43;GPV=1;SPV=0.022476;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:9,8:7,5:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4570 chr6 136560950 . T TATAAA 0 PASS DP=40;GPV=1;SPV=0.040415;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,8:13,4:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4571 chr6 137454848 . C CATCT 0 PASS DP=51;GPV=1;SPV=0.031065;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,8:8,6:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4572 chr6 137815658 . G A 0 PASS DP=54;GPV=1;SPV=0.082337;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:16,6:6,1:10,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4573 chr6 138505652 . CA C 0 PASS DP=36;GPV=1;SPV=0.03183;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,9:9,8:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4574 chr6 138518577 . G C 0 PASS DP=48;GPV=1;SPV=0.0020064;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,10:12,6:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4575 chr6 139693438 . T A 0 PASS DP=53;GPV=1;SPV=0.012894;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,6:9,4:12,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4576 chr6 139836339 . ACC A 0 PASS DP=69;GPV=1;SPV=0.076397;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:14,3:19,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4577 chr6 140064260 . A G 0 PASS DP=27;GPV=1;SPV=0.057037;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:7,3:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4578 chr6 140712153 . TTA T 0 PASS DP=44;GPV=1;SPV=0.039138;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:7,2:12,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4579 chr6 140713276 . GTATGTT G 0 PASS DP=51;GPV=1;SPV=0.052464;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:17,5:5,3:12,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4580 chr6 140713294 . G C 0 PASS DP=58;GPV=1;SPV=0.012992;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:17,10:6,6:11,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4581 chr6 140862078 . AC A 0 PASS DP=52;GPV=1;SPV=0.12547;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:24,4:16,2:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4582 chr6 141084311 . CAA C 0 PASS DP=32;GPV=1;SPV=0.038324;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:7,6:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4583 chr6 141188441 . T TCTTCCTTC 0 PASS DP=23;GPV=1;SPV=0.17622;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:5,4:0,1:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4584 chr6 141192831 . C CAAA 0 PASS DP=31;GPV=1;SPV=0.038078;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,7:6,6:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4585 chr6 142093999 . TG T 0 PASS DP=40;GPV=1;SPV=0.031374;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,7:8,5:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4586 chr6 142359203 . T TA 0 PASS DP=41;GPV=1;SPV=0.11425;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:10,4:11,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4587 chr6 142638714 . GGAAA G 0 PASS DP=40;GPV=1;SPV=0.026299;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,6:8,4:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4588 chr6 144103325 . TCCTTTCCTTTCCTTTCCTTTC T 0 PASS DP=69;GPV=1;SPV=0.044178;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:32,8:16,6:16,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4589 chr6 144470478 . G T 0 PASS DP=62;GPV=1;SPV=0.0011821;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:25,11:8,7:17,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4590 chr6 145235589 . CAT C 0 PASS DP=37;GPV=1;SPV=0.023839;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:6,8:4,6:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4591 chr6 146038052 . G A 0 PASS DP=61;GPV=1;SPV=0.0014979;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:20,21:7,6:13,15
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4592 chr6 146179449 . T C 0 PASS DP=45;GPV=1;SPV=0.024094;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:18,16:9,9:9,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4593 chr6 146819282 . A T 0 PASS DP=26;GPV=1;SPV=0.1592;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:6,2:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4594 chr6 147213434 . A G 0 PASS DP=42;GPV=1;SPV=0.20468;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:14,4:9,3:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4595 chr6 148032223 . C CAA 0 PASS DP=32;GPV=1;SPV=0.0055469;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,8:6,7:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4596 chr6 148101852 . CT C 0 PASS DP=28;GPV=1;SPV=0.14945;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:12,3:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4597 chr6 151092970 . C T 0 PASS DP=67;GPV=1;SPV=0.0010743;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:23,22:15,12:8,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4598 chr6 151146661 . C CAAAAAA 0 PASS DP=52;GPV=1;SPV=0.060632;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:29,8:13,5:16,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4599 chr6 151335480 . G T 0 PASS DP=69;GPV=1;SPV=0.044278;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:27,11:13,3:14,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4600 chr6 152444932 . G A 0 PASS DP=66;GPV=1;SPV=0.00056465;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:28,15:16,6:12,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4601 chr6 154687581 . GT G 0 PASS DP=60;GPV=1;SPV=0.1208;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:22,3:10,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4602 chr6 155632582 . A T 0 PASS DP=64;GPV=1;SPV=7.9328e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:22,14:12,9:10,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4603 chr6 155823264 . A G 0 PASS DP=48;GPV=1;SPV=0.035714;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:24,7:13,5:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4604 chr6 156801196 . CT C 0 PASS DP=22;GPV=1;SPV=0.010394;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:4,8:3,7:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4605 chr6 157570780 . TAC T 0 PASS DP=58;GPV=1;SPV=0.15567;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:20,3:13,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4606 chr6 157992407 . T C 0 PASS DP=43;GPV=1;SPV=0.1025;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:9,1:12,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4607 chr6 158308141 . A C 0 PASS DP=49;GPV=1;SPV=0.012187;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:19,11:11,9:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4608 chr6 158348173 . G GTT 0 PASS DP=40;GPV=1;SPV=0.017286;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:14,11:8,8:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4609 chr6 158522390 . GTTTTTTTTTTTTTTTTTTTTTTTTTTTTT G 0 PASS DP=24;GPV=1;SPV=0.089245;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,5:9,3:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4610 chr6 158681836 . A C 0 PASS DP=69;GPV=1;SPV=7.061e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:26,17:16,9:10,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4611 chr6 158715599 . T TCACACACACACACA 0 PASS DP=26;GPV=1;SPV=0.12174;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:5,1:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4612 chr6 158936948 . CAA C 0 PASS DP=34;GPV=1;SPV=0.025586;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,9:9,8:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4613 chr6 159538338 . A AAAGAAAGAAAG 0 PASS DP=43;GPV=1;SPV=0.016242;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:12,10:10,9:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4614 chr6 159547632 . G C 0 PASS DP=42;GPV=1;SPV=0.0088303;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,10:11,5:3,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4615 chr6 159637653 . C CT 0 PASS DP=34;GPV=1;SPV=0.0027765;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:6,11:2,9:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4616 chr6 160092171 . G C 0 PASS DP=25;GPV=1;SPV=0.14387;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:4,3:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4617 chr6 160635080 . C T 0 PASS DP=342;GPV=1;SPV=0.0081003;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:185:166,19:62,6:104,13
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4618 chr6 161315670 . A C 0 PASS DP=44;GPV=1;SPV=0.21854;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:28,5:13,4:15,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4619 chr6 162645869 . T TCTC 0 PASS DP=19;GPV=1;SPV=0.017028;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,6:2,5:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4620 chr6 164648830 . A T 0 PASS DP=21;GPV=1;SPV=0.015152;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:11:0,6:0,4:0,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4621 chr6 164841517 . C CT 0 PASS DP=54;GPV=1;SPV=0.00065827;SS=2;SSC=31;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:20,12:14,7:6,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4622 chr6 164841520 . A T 0 PASS DP=57;GPV=1;SPV=2.5647e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:17,15:13,7:4,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4623 chr6 165158307 . AT A 0 PASS DP=50;GPV=1;SPV=0.036877;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:10,3:7,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4624 chr6 165883553 . A AAT 0 PASS DP=57;GPV=1;SPV=0.013433;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:21,14:7,3:14,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4625 chr6 165890002 . C A 0 PASS DP=19;GPV=1;SPV=0.21053;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:0,0:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4626 chr6 166206742 . T TA 0 PASS DP=30;GPV=1;SPV=0.11166;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:8,2:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4627 chr6 167288451 . C A 0 PASS DP=62;GPV=1;SPV=0.23612;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:18,5:10,3:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4628 chr6 167389686 . G A 0 PASS DP=47;GPV=1;SPV=0.11479;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:15,3:9,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4629 chr6 167389695 . CAT C 0 PASS DP=46;GPV=1;SPV=0.14555;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:17,3:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4630 chr6 168523082 . T C 0 PASS DP=48;GPV=1;SPV=0.024823;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:10,1:9,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4631 chr6 168615690 . A AGG 0 PASS DP=32;GPV=1;SPV=0.13473;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:14,3:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4632 chr6 168618422 . T TAAG 0 PASS DP=36;GPV=1;SPV=0.12418;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:7,2:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4633 chr6 168842816 . T A 0 PASS DP=51;GPV=1;SPV=0.042521;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:12,1:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4634 chr6 168932574 . T G 0 PASS DP=17;GPV=1;SPV=0.26471;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:4,1:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4635 chr6 169372589 . C T 0 PASS DP=20;GPV=1;SPV=0.026006;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:3,3:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4636 chr7 75720 . C T 0 PASS DP=59;GPV=1;SPV=0.0011576;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,9:7,7:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4637 chr7 598462 . ACCCT A 0 PASS DP=21;GPV=1;SPV=0.047472;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:3,3:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4638 chr7 685288 . ATG A 0 PASS DP=23;GPV=1;SPV=0.11429;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:11:1,3:0,1:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4639 chr7 897704 . C T 0 PASS DP=28;GPV=1;SPV=0.0011785;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:4,8:0,6:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4640 chr7 1136379 . AATATATAAAC A 0 PASS DP=50;GPV=1;SPV=0.029742;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,6:9,4:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4641 chr7 1623711 . T A 0 PASS DP=25;GPV=1;SPV=0.17128;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:5,2:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4642 chr7 2563377 . G T 0 PASS DP=50;GPV=1;SPV=0.0036197;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,10:9,1:4,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4643 chr7 3321786 . T TTCTCCC 0 PASS DP=16;GPV=1;SPV=0.16484;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,2:0,0:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4644 chr7 3321828 . C T 0 PASS DP=21;GPV=1;SPV=0.031623;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,6:1,3:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4645 chr7 4139489 . A G 0 PASS DP=43;GPV=1;SPV=0.037194;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,7:6,4:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4646 chr7 4139495 . G A 0 PASS DP=41;GPV=1;SPV=0.0048821;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:20:2,7:1,3:1,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4647 chr7 4230039 . AGAAGGAAGGAAG A 0 PASS DP=25;GPV=1;SPV=0.14757;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,4:5,3:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4648 chr7 5009596 . G A 0 PASS DP=26;GPV=1;SPV=0.076923;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:4,3:1,1:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4649 chr7 5315430 . T G 0 PASS DP=53;GPV=1;SPV=0.013237;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:7,1:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4650 chr7 6791510 . A G 0 PASS DP=39;GPV=1;SPV=0.018966;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:10,5:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4651 chr7 6810370 . T C 0 PASS DP=57;GPV=1;SPV=0.021538;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:5,3:3,2:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4652 chr7 6818694 . AC A 0 PASS DP=54;GPV=1;SPV=0.019243;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:17,6:13,4:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4653 chr7 7678781 . ATT A 0 PASS DP=60;GPV=1;SPV=0.019711;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:28,7:17,3:11,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4654 chr7 8828316 . T C 0 PASS DP=57;GPV=1;SPV=0.00019952;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:19,12:11,7:8,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4655 chr7 9101580 . CCGAGAT C 0 PASS DP=39;GPV=1;SPV=0.0061699;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,9:8,7:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4656 chr7 9392156 . A AAAAT 0 PASS DP=45;GPV=1;SPV=9.7173e-05;SS=2;SSC=40;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:7,13:2,4:5,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4657 chr7 10314129 . C CAAA 0 PASS DP=16;GPV=1;SPV=0.0034965;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:8:2,6:1,4:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4658 chr7 10464369 . C T 0 PASS DP=43;GPV=1;SPV=0.0089009;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,5:10,4:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4659 chr7 15152600 . C G 0 PASS DP=58;GPV=1;SPV=0.00016168;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,10:8,4:9,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4660 chr7 16605673 . A C 0 PASS DP=28;GPV=1;SPV=0.00761;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:16:2,7:1,3:1,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4661 chr7 16677051 . C CTT 0 PASS DP=23;GPV=1;SPV=0.004644;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:3,7:2,5:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4662 chr7 19524984 . C T 0 PASS DP=19;GPV=1;SPV=0.0021645;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:9:0,5:0,2:0,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4663 chr7 20668377 . C A 0 PASS DP=98;GPV=1;SPV=0.010201;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:41,6:34,2:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4664 chr7 20944718 . TTTTTG T 0 PASS DP=45;GPV=1;SPV=0.0062751;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,10:6,6:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4665 chr7 22831406 . A C 0 PASS DP=30;GPV=1;SPV=0.00084958;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:5,10:5,6:0,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4666 chr7 22934226 . T C 0 PASS DP=39;GPV=1;SPV=0.19231;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:4,2:3,1:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4667 chr7 23036374 . T C 0 PASS DP=29;GPV=1;SPV=0.010837;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:5,3:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4668 chr7 24338299 . TA T 0 PASS DP=47;GPV=1;SPV=0.018907;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:19,6:11,2:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4669 chr7 25488415 . C CCTCTCTCTCTCTCTCTCT 0 PASS DP=35;GPV=1;SPV=0.026393;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,5:6,4:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4670 chr7 26261914 . G A 0 PASS DP=53;GPV=1;SPV=0.0043971;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,6:9,2:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4671 chr7 27510588 . TA T 0 PASS DP=26;GPV=1;SPV=0.091304;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:8,3:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4672 chr7 28980322 . C A 0 PASS DP=27;GPV=1;SPV=0.00037084;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:10:1,8:0,7:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4673 chr7 29396459 . CA C 0 PASS DP=31;GPV=1;SPV=0.012399;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,6:5,5:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4674 chr7 29643558 . C CAACTGTCCTCTTCTGAAGAAGAGAA 0 PASS DP=41;GPV=1;SPV=0.0043071;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:3,5:2,2:1,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4675 chr7 30557312 . CT C 0 PASS DP=48;GPV=1;SPV=2.4682e-05;SS=2;SSC=46;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:8,17:5,10:3,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4676 chr7 31586467 . G T 0 PASS DP=58;GPV=1;SPV=0.084757;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:11,1:17,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4677 chr7 32380404 . A ATTT 0 PASS DP=39;GPV=1;SPV=0.055138;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:7,10:3,5:4,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4678 chr7 32466943 . T A 0 PASS DP=28;GPV=1;SPV=0.028986;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,7:5,5:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4679 chr7 32466948 . G A 0 PASS DP=27;GPV=1;SPV=0.0087567;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,8:3,5:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4680 chr7 32682216 . T C 0 PASS DP=51;GPV=1;SPV=0.04724;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:7,4:5,2:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4681 chr7 33411011 . G T 0 PASS DP=23;GPV=1;SPV=0.080745;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:6,2:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4682 chr7 34663041 . T TTCTCTCTCTCTCTCTC 0 PASS DP=24;GPV=1;SPV=0.029799;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,5:3,3:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4683 chr7 36417674 . C CT 0 PASS DP=22;GPV=1;SPV=0.031734;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,6:3,4:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4684 chr7 36543947 . C CTTTCTT 0 PASS DP=23;GPV=1;SPV=0.0031992;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:10:2,6:2,4:0,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4685 chr7 37467163 . T G 0 PASS DP=71;GPV=1;SPV=3.5497e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:18,13:8,4:10,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4686 chr7 42888090 . T TGCGC 0 PASS DP=23;GPV=1;SPV=0.15385;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,4:1,1:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4687 chr7 43644726 . A AT 0 PASS DP=28;GPV=1;SPV=0.16667;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:2,2:1,1:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4688 chr7 43974329 . G A 0 PASS DP=44;GPV=1;SPV=0.024248;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,5:6,1:11,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4689 chr7 43986652 . T C 0 PASS DP=82;GPV=1;SPV=0.041121;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:32,10:12,8:20,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4690 chr7 45711646 . C T 0 PASS DP=31;GPV=1;SPV=0.06993;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:3,3:1,2:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4691 chr7 45753114 . GT G 0 PASS DP=35;GPV=1;SPV=0.036522;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:7,6:4,4:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4692 chr7 46062612 . T A 0 PASS DP=32;GPV=1;SPV=0.04308;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,5:5,4:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4693 chr7 47674091 . A G 0 PASS DP=33;GPV=1;SPV=0.036101;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,5:8,4:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4694 chr7 47674098 . AAAG A 0 PASS DP=28;GPV=1;SPV=0.013095;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:5,4:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4695 chr7 48245005 . C T 0 PASS DP=44;GPV=1;SPV=0.049827;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,9:11,2:8,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4696 chr7 48475458 . ATT A 0 PASS DP=31;GPV=1;SPV=0.030629;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,8:6,3:4,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4697 chr7 48895669 . A T 0 PASS DP=30;GPV=1;SPV=0.018062;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:4,2:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4698 chr7 49800848 . CA C 0 PASS DP=21;GPV=1;SPV=0.022704;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,5:4,4:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4699 chr7 52688239 . GTATATATA G 0 PASS DP=61;GPV=1;SPV=0.0011717;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:22,23:9,13:13,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4700 chr7 52926813 . C T 0 PASS DP=54;GPV=1;SPV=0.062087;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:19,3:10,1:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4701 chr7 53890193 . C G 0 PASS DP=59;GPV=1;SPV=0.18072;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:18,3:17,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4702 chr7 53900376 . CAG C 0 PASS DP=56;GPV=1;SPV=0.022272;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:22,13:10,7:12,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4703 chr7 54138307 . TCTC T 0 PASS DP=42;GPV=1;SPV=0.11302;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:16,2:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4704 chr7 55402077 . G GC 0 PASS DP=59;GPV=1;SPV=0.1019;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:26,2:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4705 chr7 55936265 . A C 0 PASS DP=47;GPV=1;SPV=0.098394;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:9,2:14,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4706 chr7 56574856 . C CAA 0 PASS DP=32;GPV=1;SPV=0.1088;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,5:11,4:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4707 chr7 57321339 . AAATAG A 0 PASS DP=37;GPV=1;SPV=0.036129;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,9:8,7:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4708 chr7 57321345 . G T 0 PASS DP=40;GPV=1;SPV=0.00015096;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:8,12:5,8:3,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4709 chr7 58080961 . G T 0 PASS DP=302;GPV=1;SPV=0.013015;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:155:131,24:78,12:53,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4710 chr7 58081744 . C T 0 PASS DP=150;GPV=1;SPV=0.020186;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:92:81,11:35,6:46,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4711 chr7 60756709 . T C 0 PASS DP=44;GPV=1;SPV=0.12928;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:22,4:1,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4712 chr7 60954031 . G A 0 PASS DP=93;GPV=1;SPV=0.010686;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:39,6:16,4:23,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4713 chr7 60958391 . C T 0 PASS DP=126;GPV=1;SPV=0.015187;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:47,12:18,6:29,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4714 chr7 61133326 . G C 0 PASS DP=53;GPV=1;SPV=0.25208;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:34,4:31,4:3,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4715 chr7 61395961 . T C 0 PASS DP=29;GPV=1;SPV=0.25199;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:7,2:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4716 chr7 61409965 . G A 0 PASS DP=149;GPV=1;SPV=0.024174;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:79:67,12:28,5:39,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4717 chr7 62080576 . C T 0 PASS DP=21;GPV=1;SPV=0.0089783;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:3,6:2,1:1,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4718 chr7 62264353 . CT C 0 PASS DP=75;GPV=1;SPV=0.023608;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:32,8:21,1:11,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4719 chr7 62264369 . C G 0 PASS DP=75;GPV=1;SPV=0.019062;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:34,6:19,1:15,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4720 chr7 62274256 . T A 0 PASS DP=163;GPV=1;SPV=0.0075629;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:85:73,12:33,2:40,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4721 chr7 62321093 . T A 0 PASS DP=105;GPV=1;SPV=0.033331;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:67:51,16:26,8:25,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4722 chr7 62327707 . C T 0 PASS DP=85;GPV=1;SPV=0.041789;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:41,5:17,1:24,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4723 chr7 62337980 . GAATGGAACCGAAAGGAATCATCATCA G 0 PASS DP=58;GPV=1;SPV=0.040001;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:24,11:12,4:12,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4724 chr7 63122235 . A G 0 PASS DP=42;GPV=1;SPV=0.012445;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,10:6,3:6,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4725 chr7 63188033 . G GCACA 0 PASS DP=70;GPV=1;SPV=0.0094129;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:20,10:17,9:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4726 chr7 63537977 . T C 0 PASS DP=62;GPV=1;SPV=0.019369;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:29,13:13,4:16,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4727 chr7 63598018 . C T 0 PASS DP=26;GPV=1;SPV=0.049428;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,7:3,4:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4728 chr7 63604438 . C A 0 PASS DP=29;GPV=1;SPV=0.036782;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,5:5,4:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4729 chr7 63758856 . G C 0 PASS DP=302;GPV=1;SPV=0.018818;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:168:143,25:97,16:46,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4730 chr7 64337755 . G GTT 0 PASS DP=44;GPV=1;SPV=0.0099524;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:17,10:8,7:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4731 chr7 64963887 . A ATATATATATATATGTATG 0 PASS DP=32;GPV=1;SPV=0.040384;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:9,9:4,5:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4732 chr7 65587022 . G T 0 PASS DP=76;GPV=1;SPV=0.0049761;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:35,9:14,2:21,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4733 chr7 65588278 . C A 0 PASS DP=69;GPV=1;SPV=0.019393;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:31,6:16,3:15,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4734 chr7 67435582 . C CT 0 PASS DP=22;GPV=1;SPV=0.034056;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,6:3,5:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4735 chr7 67730634 . A G 0 PASS DP=25;GPV=1;SPV=0.18814;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:6,3:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4736 chr7 67827049 . GTTTTTTTTTT G 0 PASS DP=29;GPV=1;SPV=0.25199;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:9,3:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4737 chr7 67956975 . CA C 0 PASS DP=32;GPV=1;SPV=0.041466;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:6,5:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4738 chr7 68268808 . T TTC 0 PASS DP=31;GPV=1;SPV=0.10122;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:12,3:1,0:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4739 chr7 68363965 . C T 0 PASS DP=43;GPV=1;SPV=0.14221;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:11,2:12,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4740 chr7 68545791 . C T 0 PASS DP=24;GPV=1;SPV=0.2;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:1,2:0,1:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4741 chr7 68545794 . T C 0 PASS DP=24;GPV=1;SPV=0.2;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:1,2:0,1:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4742 chr7 68769865 . A AACACACACACACACACACACACAC 0 PASS DP=34;GPV=1;SPV=0.13168;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,6:13,4:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4743 chr7 69542156 . CTTT C 0 PASS DP=25;GPV=1;SPV=0.077477;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,6:7,5:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4744 chr7 70004169 . T TTA 0 PASS DP=64;GPV=1;SPV=0.02165;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:29,6:15,4:14,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4745 chr7 70873247 . CA C 0 PASS DP=29;GPV=1;SPV=0.049536;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:4,9:1,7:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4746 chr7 71431207 . TTC T 0 PASS DP=37;GPV=1;SPV=0.0065689;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,9:6,4:8,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4747 chr7 71431210 . T C 0 PASS DP=28;GPV=1;SPV=0.3956;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,2:2,1:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4748 chr7 71571092 . AC A 0 PASS DP=46;GPV=1;SPV=0.090497;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,5:13,2:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4749 chr7 71947570 . G C 0 PASS DP=62;GPV=1;SPV=9.1194e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:17,14:8,8:9,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4750 chr7 72088685 . T G 0 PASS DP=37;GPV=1;SPV=0.037397;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:13,16:7,9:6,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4751 chr7 72393730 . T C 0 PASS DP=55;GPV=1;SPV=0.0036289;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:21,17:12,9:9,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4752 chr7 72408270 . T TA 0 PASS DP=38;GPV=1;SPV=0.0045179;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:9,11:5,5:4,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4753 chr7 73156171 . C G 0 PASS DP=56;GPV=1;SPV=0.098394;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:23,4:8,2:15,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4754 chr7 74339293 . T TTTA 0 PASS DP=64;GPV=1;SPV=0.12625;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:38,5:15,4:23,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4755 chr7 74528869 . AGATGGATGGATG A 0 PASS DP=26;GPV=1;SPV=0.014569;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:1,6:1,5:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4756 chr7 74667836 . C CTT 0 PASS DP=52;GPV=1;SPV=0.0038515;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:16,12:9,7:7,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4757 chr7 74915735 . G C 0 PASS DP=117;GPV=1;SPV=0.036689;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:68:53,15:20,4:33,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4758 chr7 75371230 . G A 0 PASS DP=19;GPV=1;SPV=0.05418;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,4:0,2:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4759 chr7 75500789 . A G 0 PASS DP=68;GPV=1;SPV=0.011392;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:24,5:16,2:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4760 chr7 75611466 . C CAA 0 PASS DP=48;GPV=1;SPV=0.040656;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,6:9,4:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4761 chr7 75906820 . C T 0 PASS DP=23;GPV=1;SPV=0.034533;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,5:2,4:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4762 chr7 75906821 . T C 0 PASS DP=23;GPV=1;SPV=0.034533;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,5:2,4:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4763 chr7 75906823 . A G 0 PASS DP=22;GPV=1;SPV=0.043344;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,5:2,4:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4764 chr7 76414696 . C CT 0 PASS DP=17;GPV=1;SPV=0.020979;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:2,4:0,0:2,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4765 chr7 76448259 . G T 0 PASS DP=44;GPV=1;SPV=0.0054908;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,6:5,3:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4766 chr7 76536740 . C T 0 PASS DP=44;GPV=1;SPV=0.13372;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:20,3:9,1:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4767 chr7 76537020 . C CA 0 PASS DP=20;GPV=1;SPV=0.029799;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,5:1,4:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4768 chr7 76606873 . A C 0 PASS DP=32;GPV=1;SPV=0.066185;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:8,3:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4769 chr7 76652548 . C T 0 PASS DP=32;GPV=1;SPV=0.16643;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:10,2:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4770 chr7 76740475 . T G 0 PASS DP=66;GPV=1;SPV=0.081731;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:15,2:17,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4771 chr7 76991438 . G A 0 PASS DP=62;GPV=1;SPV=0.014976;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:23,11:13,6:10,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4772 chr7 76993485 . T C 0 PASS DP=57;GPV=1;SPV=0.14912;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:14,1:18,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4773 chr7 77039407 . C T 0 PASS DP=44;GPV=1;SPV=0.035511;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,9:13,8:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4774 chr7 77060836 . G C 0 PASS DP=45;GPV=1;SPV=0.028266;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,6:10,1:10,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4775 chr7 77334580 . T TA 0 PASS DP=32;GPV=1;SPV=0.015535;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:8,9:5,6:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4776 chr7 77747911 . C CG 0 PASS DP=49;GPV=1;SPV=0.018294;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:10,2:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4777 chr7 78085583 . A C 0 PASS DP=44;GPV=1;SPV=0.00022435;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:3,8:3,3:0,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4778 chr7 78762144 . G GAACAAGTAGAGATTTTTGGATTAA 0 PASS DP=60;GPV=1;SPV=0.018073;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,7:6,6:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4779 chr7 78806867 . CAAAAT C 0 PASS DP=40;GPV=1;SPV=0.0020052;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:11,12:8,7:3,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4780 chr7 79442451 . A AGTGTGTGTGTGTGT 0 PASS DP=37;GPV=1;SPV=0.018778;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:5,7:3,4:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4781 chr7 80604350 . ATTTTTTTTTTTTTTT A 0 PASS DP=20;GPV=1;SPV=0.054945;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:3,3:3,2:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4782 chr7 80920557 . GTGTCTCAGACTCACGC G 0 PASS DP=66;GPV=1;SPV=1.757e-05;SS=2;SSC=47;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:18,12:7,7:11,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4783 chr7 81217947 . G A 0 PASS DP=56;GPV=1;SPV=0.031089;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:24,5:9,2:15,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4784 chr7 82012254 . G GAAAA 0 PASS DP=42;GPV=1;SPV=0.0064629;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:14,15:6,7:8,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4785 chr7 82040452 . C CAAA 0 PASS DP=28;GPV=1;SPV=0.037112;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:4,7:3,6:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4786 chr7 83539872 . T C 0 PASS DP=35;GPV=1;SPV=0.092532;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:10,3:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4787 chr7 84008509 . G A 0 PASS DP=38;GPV=1;SPV=0.047386;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:3,4:1,2:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4788 chr7 84024011 . C CA 0 PASS DP=29;GPV=1;SPV=0.010836;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:4,10:3,8:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4789 chr7 85476603 . T TTATATATATATATATA 0 PASS DP=27;GPV=1;SPV=0.0011899;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:5,8:5,6:0,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4790 chr7 87233899 . G GTT 0 PASS DP=28;GPV=1;SPV=0.012821;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:2,10:1,9:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4791 chr7 87924871 . C G 0 PASS DP=56;GPV=1;SPV=0.00091169;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,9:12,4:7,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4792 chr7 90074354 . A C 0 PASS DP=28;GPV=1;SPV=0.00066955;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:17:4,13:1,2:3,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4793 chr7 90791903 . C CTT 0 PASS DP=35;GPV=1;SPV=0.03602;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:8,4:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4794 chr7 91211567 . T TAA 0 PASS DP=20;GPV=1;SPV=0.051282;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,4:2,3:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4795 chr7 92516053 . GAA G 0 PASS DP=31;GPV=1;SPV=0.018307;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:5,6:1,5:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4796 chr7 93204324 . CTCTA C 0 PASS DP=56;GPV=1;SPV=0.048633;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,9:9,4:13,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4797 chr7 94076128 . T G 0 PASS DP=62;GPV=1;SPV=0.00027944;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,10:9,5:11,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4798 chr7 94381648 . T TTCTCTCTCTCTC 0 PASS DP=32;GPV=1;SPV=0.022999;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:7,6:3,4:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4799 chr7 94557386 . T A 0 PASS DP=51;GPV=1;SPV=0.0021522;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,6:10,1:4,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4800 chr7 97363467 . G GTCTGTCTATCTATCTATCTATCTA 0 PASS DP=45;GPV=1;SPV=0.079112;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,4:9,1:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4801 chr7 98439443 . CT C 0 PASS DP=25;GPV=1;SPV=0.037185;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,6:0,1:9,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4802 chr7 99181147 . CTCCGTCTGTG C 0 PASS DP=30;GPV=1;SPV=0.021073;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:7,3:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4803 chr7 100325052 . A T 0 PASS DP=84;GPV=1;SPV=0.0090684;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:34,9:17,4:17,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4804 chr7 100495714 . C CA 0 PASS DP=34;GPV=1;SPV=0.037021;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,5:4,4:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4805 chr7 100911046 . C CTTT 0 PASS DP=27;GPV=1;SPV=0.091659;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,6:5,5:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4806 chr7 100996823 . C T 0 PASS DP=71;GPV=1;SPV=0.03701;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:2,0:26,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4807 chr7 101000294 . C T 0 PASS DP=260;GPV=1;SPV=0.017512;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:117:103,14:37,5:66,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4808 chr7 101035091 . T G 0 PASS DP=69;GPV=1;SPV=0.03525;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:25,10:15,6:10,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4809 chr7 101636212 . A G 0 PASS DP=21;GPV=1;SPV=0.021672;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,5:4,3:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4810 chr7 101680995 . GCA G 0 PASS DP=57;GPV=1;SPV=0.01571;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:7,2:14,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4811 chr7 102180904 . TTATTTTATTTTATTG T 0 PASS DP=50;GPV=1;SPV=0.0041421;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:17,11:8,6:9,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4812 chr7 102189365 . C G 0 PASS DP=22;GPV=1;SPV=0.46667;SS=2;SSC=3;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:5,2:4,1:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4813 chr7 102497057 . G A 0 PASS DP=177;GPV=1;SPV=0.013846;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:74:59,15:32,8:27,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4814 chr7 102520792 . C T 0 PASS DP=30;GPV=1;SPV=0.0098951;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,7:3,6:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4815 chr7 102578254 . C T 0 PASS DP=206;GPV=1;SPV=0.01884;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:97:81,16:33,7:48,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4816 chr7 102581314 . C T 0 PASS DP=167;GPV=1;SPV=0.014308;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:77:65,12:28,8:37,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4817 chr7 102603623 . T C 0 PASS DP=258;GPV=1;SPV=0.0050406;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:107:88,19:54,5:34,14
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4818 chr7 102604828 . C T 0 PASS DP=82;GPV=1;SPV=0.018609;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:30,11:16,6:14,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4819 chr7 102606201 . AC A 0 PASS DP=270;GPV=1;SPV=0.029722;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:125:109,16:37,8:72,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4820 chr7 102613305 . G A 0 PASS DP=16;GPV=1;SPV=0.23333;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:6,2:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4821 chr7 102653761 . G A 0 PASS DP=234;GPV=1;SPV=0.014869;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:101:80,21:61,15:19,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4822 chr7 102667770 . C T 0 PASS DP=306;GPV=1;SPV=0.018833;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:144:124,20:83,9:41,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4823 chr7 102679488 . G A 0 PASS DP=46;GPV=1;SPV=0.0078687;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,7:2,2:6,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4824 chr7 102737451 . T G 0 PASS DP=51;GPV=1;SPV=0.081933;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:17,2:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4825 chr7 102779850 . CTTT C 0 PASS DP=18;GPV=1;SPV=0.052941;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,4:4,3:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4826 chr7 102788030 . T C 0 PASS DP=49;GPV=1;SPV=0.001713;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,9:8,1:5,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4827 chr7 104258838 . C CTTTTTTTTTTTTT 0 PASS DP=26;GPV=1;SPV=0.0055336;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:1,1:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4828 chr7 104507458 . CAAGATGGATTA C 0 PASS DP=34;GPV=1;SPV=0.0011962;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,7:6,1:2,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4829 chr7 104565760 . T TA 0 PASS DP=47;GPV=1;SPV=0.20161;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:16,2:12,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4830 chr7 104841491 . G GGTGTGTGTGT 0 PASS DP=34;GPV=1;SPV=0.0039969;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:5,8:2,3:3,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4831 chr7 104947086 . C CA 0 PASS DP=36;GPV=1;SPV=0.04366;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,5:1,4:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4832 chr7 105731748 . A AAAAAGAAAAGAAAAGAAAAGAAAAGAG 0 PASS DP=24;GPV=1;SPV=0.030075;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,5:4,2:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4833 chr7 105845204 . CAAAAAA C 0 PASS DP=26;GPV=1;SPV=0.031734;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,6:3,4:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4834 chr7 106375993 . C CA 0 PASS DP=25;GPV=1;SPV=0.037681;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,7:5,5:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4835 chr7 106933413 . CAA C 0 PASS DP=23;GPV=1;SPV=0.085139;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,4:4,3:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4836 chr7 107112003 . C CA 0 PASS DP=31;GPV=1;SPV=0.00082523;SS=2;SSC=30;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:2,5:1,4:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4837 chr7 108706816 . A G 0 PASS DP=37;GPV=1;SPV=0.068627;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:6,4:3,1:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4838 chr7 109368724 . A C 0 PASS DP=59;GPV=1;SPV=0.22222;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:3,2:2,1:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4839 chr7 109379377 . A C 0 PASS DP=72;GPV=1;SPV=1.689e-06;SS=2;SSC=57;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:17,13:10,6:7,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4840 chr7 109663678 . GATATATAGATATAGATATAGAT G 0 PASS DP=28;GPV=1;SPV=0.0032938;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,6:0,3:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4841 chr7 112058024 . A AT 0 PASS DP=37;GPV=1;SPV=0.021859;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:8,10:3,7:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4842 chr7 113134236 . AATAG A 0 PASS DP=37;GPV=1;SPV=0.0087276;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,9:8,4:3,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4843 chr7 114043821 . T TTTTATA 0 PASS DP=26;GPV=1;SPV=0.02087;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,6:3,2:3,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4844 chr7 115974451 . A T 0 PASS DP=35;GPV=1;SPV=0.12587;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:5,4:1,2:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4845 chr7 116706888 . AT A 0 PASS DP=39;GPV=1;SPV=0.0020691;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:8,5:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4846 chr7 117817362 . AT A 0 PASS DP=23;GPV=1;SPV=0.0024902;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:3,8:0,7:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4847 chr7 118363955 . T A 0 PASS DP=38;GPV=1;SPV=0.011586;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,5:6,4:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4848 chr7 120561598 . ATT A 0 PASS DP=23;GPV=1;SPV=0.045113;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:4,1:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4849 chr7 121047646 . TTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC T 0 PASS DP=27;GPV=1;SPV=0.026533;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,5:2,3:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4850 chr7 121526189 . G GAGATATATATATATAT 0 PASS DP=24;GPV=1;SPV=0.00021109;SS=2;SSC=36;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:2,7:1,6:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4851 chr7 121691029 . C CAGAGAGAGAG 0 PASS DP=31;GPV=1;SPV=0.0085986;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:3,5:1,4:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4852 chr7 123443670 . T A 0 PASS DP=43;GPV=1;SPV=1.6458e-07;SS=2;SSC=67;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:16:4,12:2,5:2,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4853 chr7 123581414 . T TAAA 0 PASS DP=33;GPV=1;SPV=0.034106;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,9:8,4:3,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4854 chr7 123808418 . C CGT 0 PASS DP=50;GPV=1;SPV=0.0006886;SS=2;SSC=31;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:9,17:5,8:4,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4855 chr7 124387962 . C CT 0 PASS DP=34;GPV=1;SPV=0.0065088;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:9,12:5,10:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4856 chr7 124414904 . T TCA 0 PASS DP=24;GPV=1;SPV=0.014666;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:4,5:4,3:0,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4857 chr7 124518625 . GA G 0 PASS DP=27;GPV=1;SPV=0.012174;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:6,8:3,6:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4858 chr7 124564094 . T A 0 PASS DP=81;GPV=1;SPV=3.4344e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:22,10:12,4:10,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4859 chr7 125478434 . TA T 0 PASS DP=41;GPV=1;SPV=0.026469;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,7:9,5:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4860 chr7 126218418 . GTGTACACATATA G 0 PASS DP=26;GPV=1;SPV=0.032107;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,5:6,1:0,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4861 chr7 126292042 . G GA 0 PASS DP=30;GPV=1;SPV=0.030651;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,5:8,4:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4862 chr7 127422451 . G T 0 PASS DP=47;GPV=1;SPV=0.034545;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:10,6:6,4:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4863 chr7 128131301 . A AT 0 PASS DP=36;GPV=1;SPV=0.011224;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,8:7,1:3,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4864 chr7 130119538 . A T 0 PASS DP=38;GPV=1;SPV=0.16667;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:2,2:1,1:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4865 chr7 130759489 . A ATT 0 PASS DP=25;GPV=1;SPV=0.024887;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:4,8:2,4:2,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4866 chr7 130920160 . A G 0 PASS DP=26;GPV=1;SPV=0.023452;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:4,4:4,2:0,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4867 chr7 131868548 . A T 0 PASS DP=35;GPV=1;SPV=0.028878;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,5:2,3:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4868 chr7 132955173 . G GGTGTGTGTGTGT 0 PASS DP=27;GPV=1;SPV=0.15021;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,5:7,4:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4869 chr7 135192108 . GTTT G 0 PASS DP=36;GPV=1;SPV=0.011437;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:9,2:3,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4870 chr7 135236276 . G A 0 PASS DP=48;GPV=1;SPV=0.038416;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:11,4:10,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4871 chr7 135941380 . A ACAATGGGGAATGTCATATGCATTCCCCATTGTTG 0 PASS DP=39;GPV=1;SPV=0.045519;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:4,2:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4872 chr7 136038520 . G GTA 0 PASS DP=24;GPV=1;SPV=0.034533;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,5:2,2:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4873 chr7 136065677 . A AAAAT 0 PASS DP=45;GPV=1;SPV=0.0020274;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:11,12:3,5:8,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4874 chr7 136452567 . G A 0 PASS DP=45;GPV=1;SPV=0.029089;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,9:7,3:11,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4875 chr7 136532076 . G T 0 PASS DP=38;GPV=1;SPV=0.05251;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:8,1:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4876 chr7 136760172 . C CT 0 PASS DP=24;GPV=1;SPV=0.027772;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,5:3,3:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4877 chr7 136867784 . C CATAT 0 PASS DP=24;GPV=1;SPV=0.041176;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,4:5,2:0,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4878 chr7 136874525 . CT C 0 PASS DP=19;GPV=1;SPV=0.00011908;SS=2;SSC=39;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:10:0,10:0,3:0,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4879 chr7 136987427 . C A 0 PASS DP=53;GPV=1;SPV=0.0016883;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,6:4,1:10,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4880 chr7 137056937 . G A 0 PASS DP=40;GPV=1;SPV=0.0048364;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:9,4:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4881 chr7 137310404 . GT G 0 PASS DP=26;GPV=1;SPV=0.16484;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:4,2:3,1:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4882 chr7 137568378 . C T 0 PASS DP=60;GPV=1;SPV=3.8045e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,11:9,6:7,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4883 chr7 138682968 . C CAA 0 PASS DP=32;GPV=1;SPV=0.0014993;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,8:4,7:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4884 chr7 140186261 . C A 0 PASS DP=54;GPV=1;SPV=0.0082407;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,10:5,7:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4885 chr7 142970475 . C CCACACA 0 PASS DP=45;GPV=1;SPV=0.040449;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:8,4:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4886 chr7 143045562 . C CAAA 0 PASS DP=38;GPV=1;SPV=0.0027397;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:9,10:6,9:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4887 chr7 143070681 . T C 0 PASS DP=60;GPV=1;SPV=0.050949;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:29,5:17,1:12,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4888 chr7 143427579 . ATTATTTAT A 0 PASS DP=36;GPV=1;SPV=0.11832;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,5:4,2:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4889 chr7 143886700 . C CTT 0 PASS DP=26;GPV=1;SPV=0.082213;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,5:2,2:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4890 chr7 144281139 . T C 0 PASS DP=39;GPV=1;SPV=0.03094;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,6:8,4:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4891 chr7 145148983 . AAAG A 0 PASS DP=36;GPV=1;SPV=0.0025696;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:5,2:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4892 chr7 146679347 . C CTTT 0 PASS DP=22;GPV=1;SPV=0.01806;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,4:1,3:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4893 chr7 146855807 . GTATATATATATATATATATA G 0 PASS DP=22;GPV=1;SPV=0.0048821;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:12:2,9:1,6:1,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4894 chr7 146855829 . A G 0 PASS DP=19;GPV=1;SPV=0.037112;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:4,7:1,5:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4895 chr7 148529630 . A C 0 PASS DP=49;GPV=1;SPV=0.027778;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:22:0,2:0,1:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4896 chr7 148948385 . G C 0 PASS DP=56;GPV=1;SPV=0.038176;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:26,10:11,5:15,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4897 chr7 148990009 . CAAAAAAAAAAAAAAAAAAA C 0 PASS DP=18;GPV=1;SPV=0.06993;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:4,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4898 chr7 149323885 . T A 0 PASS DP=47;GPV=1;SPV=0.1;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:5,2:4,1:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4899 chr7 149981276 . G A 0 PASS DP=52;GPV=1;SPV=6.5514e-06;SS=2;SSC=51;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:11,12:5,3:6,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4900 chr7 150752761 . A C 0 PASS DP=45;GPV=1;SPV=0.027778;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:22:0,2:0,1:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4901 chr7 150962627 . C CAGAG 0 PASS DP=35;GPV=1;SPV=0.00030073;SS=2;SSC=35;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:6,13:3,3:3,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4902 chr7 152238768 . T C 0 PASS DP=61;GPV=1;SPV=0.026034;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,9:6,1:13,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4903 chr7 152283172 . T C 0 PASS DP=111;GPV=1;SPV=0.0089913;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:46,6:25,4:21,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4904 chr7 152378897 . A C 0 PASS DP=50;GPV=1;SPV=0.032315;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:19,7:11,3:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4905 chr7 152382577 . T C 0 PASS DP=260;GPV=1;SPV=0.0033915;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:135:109,26:84,19:25,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4906 chr7 152544996 . TA T 0 PASS DP=27;GPV=1;SPV=0.037198;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:9,4:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4907 chr7 154051071 . G A 0 PASS DP=27;GPV=1;SPV=0.0057228;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,5:3,3:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4908 chr7 154059029 . G T 0 PASS DP=34;GPV=1;SPV=0.019341;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,9:4,6:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4909 chr7 154817763 . C G 0 PASS DP=30;GPV=1;SPV=0.019985;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:9,10:5,5:4,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4910 chr7 155158292 . G GAA 0 PASS DP=31;GPV=1;SPV=0.092437;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:7,5:5,2:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4911 chr7 155158307 . G A 0 PASS DP=29;GPV=1;SPV=0.073684;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,3:3,1:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4912 chr7 155158310 . A G 0 PASS DP=31;GPV=1;SPV=0.028708;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,4:1,2:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4913 chr7 155520428 . CTTTTTTTT C 0 PASS DP=19;GPV=1;SPV=0.037112;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:4,7:1,5:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4914 chr7 155564150 . AAAG A 0 PASS DP=42;GPV=1;SPV=0.023921;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,5:8,1:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4915 chr7 155655534 . C CTT 0 PASS DP=29;GPV=1;SPV=0.017028;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,6:4,5:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4916 chr7 156352452 . G T 0 PASS DP=61;GPV=1;SPV=3.6248e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,10:10,7:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4917 chr7 156489572 . T C 0 PASS DP=16;GPV=1;SPV=0.02028;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:8:2,6:1,4:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4918 chr7 157500116 . C T 0 PASS DP=56;GPV=1;SPV=0.0031215;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:6,6:1,4:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4919 chr8 82445 . A G 0 PASS DP=29;GPV=1;SPV=0.20399;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:3,2:13,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4920 chr8 320631 . C T 0 PASS DP=65;GPV=1;SPV=0.00097095;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:27,12:18,6:9,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4921 chr8 909568 . C T 0 PASS DP=37;GPV=1;SPV=0.023342;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,6:11,2:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4922 chr8 1088941 . A G 0 PASS DP=24;GPV=1;SPV=0.011374;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:5,10:3,5:2,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4923 chr8 1092551 . G T 0 PASS DP=71;GPV=1;SPV=3.5507e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:20,15:7,9:13,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4924 chr8 1316402 . A G 0 PASS DP=39;GPV=1;SPV=0.058443;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:10,1:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4925 chr8 2367332 . GA G 0 PASS DP=48;GPV=1;SPV=0.020191;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,10:9,3:7,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4926 chr8 2787891 . T TCATTTTTACAATGAAGGGGATCTGAGTAATGTCCCC 0 PASS DP=25;GPV=1;SPV=0.11647;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:8,3:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4927 chr8 3539763 . T TAA 0 PASS DP=50;GPV=1;SPV=0.041361;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:21,14:12,10:9,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4928 chr8 3720623 . A T 0 PASS DP=47;GPV=1;SPV=0.0095364;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,9:5,3:8,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4929 chr8 6332561 . C CTT 0 PASS DP=33;GPV=1;SPV=0.024163;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:5,3:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4930 chr8 7407194 . T C 0 PASS DP=33;GPV=1;SPV=0.067367;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,6:11,4:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4931 chr8 7407195 . G A 0 PASS DP=38;GPV=1;SPV=0.048755;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,6:12,4:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4932 chr8 7407218 . CT C 0 PASS DP=62;GPV=1;SPV=0.005919;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:26,14:17,11:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4933 chr8 8037533 . G A 0 PASS DP=46;GPV=1;SPV=0.10755;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:18,3:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4934 chr8 8072408 . T TTTC 0 PASS DP=27;GPV=1;SPV=0.14387;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,4:12,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4935 chr8 8127826 . C T 0 PASS DP=47;GPV=1;SPV=0.042883;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:8,2:13,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4936 chr8 8127981 . G A 0 PASS DP=22;GPV=1;SPV=0.12121;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:0,0:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4937 chr8 8161332 . C A 0 PASS DP=137;GPV=1;SPV=0.013695;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:77:67,10:42,4:25,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4938 chr8 8184705 . C G 0 PASS DP=82;GPV=1;SPV=0.029712;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:39,9:23,6:16,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4939 chr8 8191363 . G A 0 PASS DP=222;GPV=1;SPV=0.033436;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:127:108,19:66,10:42,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4940 chr8 8313737 . T A 0 PASS DP=43;GPV=1;SPV=0.034956;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:8,1:10,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4941 chr8 8450684 . TGA T 0 PASS DP=53;GPV=1;SPV=0.096964;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:29,5:9,4:20,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4942 chr8 8450711 . C T 0 PASS DP=55;GPV=1;SPV=0.024853;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:28,8:14,5:14,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4943 chr8 8581440 . T TA 0 PASS DP=52;GPV=1;SPV=0.019537;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:22,11:10,5:12,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4944 chr8 8701105 . A G 0 PASS DP=48;GPV=1;SPV=0.010406;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:15,11:6,7:9,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4945 chr8 8887863 . A C 0 PASS DP=47;GPV=1;SPV=0.13316;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:12,1:13,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4946 chr8 8887867 . A C 0 PASS DP=42;GPV=1;SPV=0.1396;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:24,5:14,1:10,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4947 chr8 11533605 . A G 0 PASS DP=38;GPV=1;SPV=0.046584;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:8,4:4,1:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4948 chr8 12109141 . G A 0 PASS DP=31;GPV=1;SPV=0.049571;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:3,4:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4949 chr8 12211109 . T C 0 PASS DP=70;GPV=1;SPV=0.0031674;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:19,11:13,4:6,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4950 chr8 12433238 . A G 0 PASS DP=28;GPV=1;SPV=0.011071;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:7,11:4,3:3,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4951 chr8 12470177 . A G 0 PASS DP=72;GPV=1;SPV=0.0031923;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:22,13:10,4:12,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4952 chr8 12480417 . C T 0 PASS DP=31;GPV=1;SPV=0.068436;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:8,2:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4953 chr8 12484897 . C A 0 PASS DP=60;GPV=1;SPV=0.036585;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:23,9:12,5:11,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4954 chr8 12501672 . G C 0 PASS DP=49;GPV=1;SPV=0.24713;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:15,2:16,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4955 chr8 12511928 . C T 0 PASS DP=87;GPV=1;SPV=0.043162;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:49,7:26,1:23,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4956 chr8 12532508 . T A 0 PASS DP=146;GPV=1;SPV=0.029122;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:76:60,16:50,11:10,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4957 chr8 12540557 . C A 0 PASS DP=175;GPV=1;SPV=0.04744;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:100:84,16:46,10:38,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4958 chr8 12545361 . G A 0 PASS DP=225;GPV=1;SPV=0.04919;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:118:97,21:48,10:49,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4959 chr8 12548464 . C A 0 PASS DP=223;GPV=1;SPV=0.045745;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:131:110,21:52,15:58,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4960 chr8 12559662 . T C 0 PASS DP=183;GPV=1;SPV=0.018008;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:106:85,21:48,11:37,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4961 chr8 12560570 . A G 0 PASS DP=153;GPV=1;SPV=0.027097;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:82:70,12:33,5:37,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4962 chr8 12578103 . A T 0 PASS DP=217;GPV=1;SPV=0.031901;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:118:99,19:49,11:50,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4963 chr8 12584227 . G A 0 PASS DP=194;GPV=1;SPV=0.038707;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:118:97,21:52,14:45,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4964 chr8 12584800 . T A 0 PASS DP=219;GPV=1;SPV=0.017519;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:134:108,26:50,12:58,14
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4965 chr8 12589388 . C T 0 PASS DP=214;GPV=1;SPV=0.038797;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:113:94,19:43,6:51,13
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4966 chr8 12592376 . C T 0 PASS DP=139;GPV=1;SPV=0.034756;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:83:69,14:32,3:37,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4967 chr8 12608132 . C T 0 PASS DP=50;GPV=1;SPV=0.20137;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:19,2:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4968 chr8 13042708 . G T 0 PASS DP=38;GPV=1;SPV=0.064151;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,6:13,4:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4969 chr8 13553224 . ATATG A 0 PASS DP=20;GPV=1;SPV=0.16667;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:3,3:2,1:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4970 chr8 13614857 . CT C 0 PASS DP=32;GPV=1;SPV=0.11404;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:10,7:3,3:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4971 chr8 14326030 . C G 0 PASS DP=47;GPV=1;SPV=0.0050687;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,9:11,5:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4972 chr8 15638515 . CTTT C 0 PASS DP=21;GPV=1;SPV=0.24176;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,4:3,3:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4973 chr8 16414935 . CT C 0 PASS DP=34;GPV=1;SPV=0.030455;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:7,2:4,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4974 chr8 16460759 . TAGAAAA T 0 PASS DP=55;GPV=1;SPV=0.10544;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:10,2:18,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4975 chr8 16460780 . T A 0 PASS DP=65;GPV=1;SPV=0.068498;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:13,2:17,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4976 chr8 16673028 . A T 0 PASS DP=48;GPV=1;SPV=0.016081;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,7:9,4:12,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4977 chr8 16708327 . TAC T 0 PASS DP=74;GPV=1;SPV=0.042684;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:29,8:16,4:13,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4978 chr8 16776799 . G GCACACA 0 PASS DP=30;GPV=1;SPV=0.048889;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:5,1:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4979 chr8 17054738 . C CT 0 PASS DP=26;GPV=1;SPV=0.070652;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,5:8,4:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4980 chr8 17590236 . C CAAA 0 PASS DP=34;GPV=1;SPV=0.028638;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:4,9:0,6:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4981 chr8 17796289 . T C 0 PASS DP=20;GPV=1;SPV=0.051084;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,5:4,2:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4982 chr8 17968764 . A G 0 PASS DP=54;GPV=1;SPV=0.045061;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,5:10,4:15,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4983 chr8 18968879 . CAA C 0 PASS DP=37;GPV=1;SPV=0.01192;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:5,6:4,5:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4984 chr8 19102346 . T C 0 PASS DP=20;GPV=1;SPV=0.14737;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:2,1:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4985 chr8 20082331 . C CA 0 PASS DP=19;GPV=1;SPV=0.010836;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:4,5:3,3:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4986 chr8 20318613 . G T 0 PASS DP=75;GPV=1;SPV=3.3009e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:25,21:11,17:14,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4987 chr8 21182320 . C CA 0 PASS DP=44;GPV=1;SPV=0.0031524;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:10,11:9,7:1,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4988 chr8 22759117 . C T 0 PASS DP=65;GPV=1;SPV=0.00014072;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:23,13:12,6:11,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4989 chr8 23631286 . CATATATATATATATATATATATAT C 0 PASS DP=28;GPV=1;SPV=0.043255;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,5:4,2:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4990 chr8 24938125 . G GGAAAGAAA 0 PASS DP=40;GPV=1;SPV=0.080504;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:20,8:12,7:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4991 chr8 25232260 . G GTTT 0 PASS DP=45;GPV=1;SPV=0.24135;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:14,1:14,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4992 chr8 25331803 . G T 0 PASS DP=45;GPV=1;SPV=0.33939;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:5,3:4,2:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4993 chr8 25774803 . T TAC 0 PASS DP=40;GPV=1;SPV=0.0042363;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:5,15:2,9:3,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4994 chr8 26069825 . C CTTTTTTTTTT 0 PASS DP=29;GPV=1;SPV=0.14945;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:10,2:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4995 chr8 27715861 . G C 0 PASS DP=57;GPV=1;SPV=0.11275;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:19,5:7,3:12,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4996 chr8 27730488 . A ATTT 0 PASS DP=31;GPV=1;SPV=0.023736;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:3,10:1,6:2,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4997 chr8 28085241 . C CT 0 PASS DP=41;GPV=1;SPV=0.0057147;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:13,16:7,7:6,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4998 chr8 29371713 . C CATATATAT 0 PASS DP=39;GPV=1;SPV=0.013985;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:9,10:3,9:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4999 chr8 31170775 . T A 0 PASS DP=69;GPV=1;SPV=0.016248;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:30,6:13,5:17,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5000 chr8 31334164 . C CT 0 PASS DP=45;GPV=1;SPV=0.030474;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,9:11,7:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5001 chr8 34256937 . C A 0 PASS DP=24;GPV=1;SPV=0.066667;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:1,2:0,0:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5002 chr8 34824883 . TC T 0 PASS DP=42;GPV=1;SPV=0.028586;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:20,12:11,8:9,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5003 chr8 35043583 . T G 0 PASS DP=40;GPV=1;SPV=0.22404;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:13,3:11,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5004 chr8 35090325 . A C 0 PASS DP=75;GPV=1;SPV=1.7643e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:25,15:13,5:12,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5005 chr8 35615034 . G C 0 PASS DP=22;GPV=1;SPV=0.060606;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:2,3:0,2:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5006 chr8 35615036 . G C 0 PASS DP=20;GPV=1;SPV=0.16667;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:2,2:0,1:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5007 chr8 38028359 . A AT 0 PASS DP=42;GPV=1;SPV=0.017327;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,9:5,5:10,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5008 chr8 40881282 . A G 0 PASS DP=45;GPV=1;SPV=0.00081203;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:12,20:5,9:7,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5009 chr8 41140138 . A T 0 PASS DP=50;GPV=1;SPV=0.088906;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:14,3:10,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5010 chr8 41803137 . A AG 0 PASS DP=38;GPV=1;SPV=0.093821;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,7:12,5:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5011 chr8 42070064 . CT C 0 PASS DP=33;GPV=1;SPV=0.063246;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:8,5:4,4:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5012 chr8 43299183 . CTCTT C 0 PASS DP=48;GPV=1;SPV=0.0082367;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,8:9,7:11,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5013 chr8 47537201 . T G 0 PASS DP=68;GPV=1;SPV=2.1107e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:22,15:10,10:12,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5014 chr8 48254061 . A G 0 PASS DP=57;GPV=1;SPV=2.7719e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:16,13:7,6:9,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5015 chr8 49207715 . G T 0 PASS DP=36;GPV=1;SPV=0.013888;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,9:12,8:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5016 chr8 49207716 . A C 0 PASS DP=45;GPV=1;SPV=0.029089;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,9:14,8:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5017 chr8 49938598 . T TTTC 0 PASS DP=57;GPV=1;SPV=0.10204;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:35,7:11,5:24,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5018 chr8 49938611 . C T 0 PASS DP=49;GPV=1;SPV=0.31172;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:13,1:20,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5019 chr8 51074748 . TC T 0 PASS DP=41;GPV=1;SPV=0.041509;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:17,13:7,6:10,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5020 chr8 51957232 . A AGT 0 PASS DP=44;GPV=1;SPV=0.034767;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:13,8:9,7:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5021 chr8 52643697 . A C 0 PASS DP=43;GPV=1;SPV=0.26667;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:6,2:2,1:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5022 chr8 53563137 . A G 0 PASS DP=70;GPV=1;SPV=2.5231e-06;SS=2;SSC=55;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:17,13:8,7:9,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5023 chr8 54002468 . C CA 0 PASS DP=58;GPV=1;SPV=0.012179;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:21,13:16,9:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5024 chr8 54110344 . T TGAGGCAGGAGAATTGCTTGAACCTGG 0 PASS DP=55;GPV=1;SPV=0.10482;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:23,3:16,1:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5025 chr8 54347624 . A G 0 PASS DP=75;GPV=1;SPV=0.00074957;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:27,9:17,5:10,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5026 chr8 54661310 . T TCA 0 PASS DP=62;GPV=1;SPV=0.1208;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:32,4:21,2:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5027 chr8 57052018 . T A 0 PASS DP=63;GPV=1;SPV=0.014803;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:32,9:17,3:15,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5028 chr8 57206208 . G A 0 PASS DP=683;GPV=1;SPV=0.021319;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:389:342,47:105,20:237,27
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5029 chr8 57361008 . C A 0 PASS DP=63;GPV=1;SPV=0.0002055;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:22,12:13,6:9,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5030 chr8 58189295 . A ATT 0 PASS DP=27;GPV=1;SPV=0.026533;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,5:3,3:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5031 chr8 60419394 . C CTT 0 PASS DP=42;GPV=1;SPV=0.038233;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:11,6:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5032 chr8 60868355 . TTG T 0 PASS DP=62;GPV=1;SPV=0.037817;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:31,6:20,2:11,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5033 chr8 61268844 . A G 0 PASS DP=36;GPV=1;SPV=0.12418;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:6,2:12,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5034 chr8 62031560 . T G 0 PASS DP=71;GPV=1;SPV=4.1304e-07;SS=2;SSC=63;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:20,22:6,10:14,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5035 chr8 62102904 . C T 0 PASS DP=30;GPV=1;SPV=0.26692;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:9,3:9,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5036 chr8 62345374 . CAT C 0 PASS DP=27;GPV=1;SPV=0.028638;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:4,6:1,3:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5037 chr8 62506476 . C CTTTCTTTCTTTT 0 PASS DP=39;GPV=1;SPV=0.082251;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,4:6,3:10,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5038 chr8 62595382 . C CTT 0 PASS DP=33;GPV=1;SPV=0.17001;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,6:13,5:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5039 chr8 63271871 . C A 0 PASS DP=41;GPV=1;SPV=0.0037321;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,9:9,3:6,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5040 chr8 63370298 . C T 0 PASS DP=70;GPV=1;SPV=3.9131e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:20,11:12,3:8,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5041 chr8 63835824 . GA G 0 PASS DP=53;GPV=1;SPV=0.020485;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:26,8:18,3:8,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5042 chr8 64044695 . A AAAAGAAAGAAAGAAAG 0 PASS DP=32;GPV=1;SPV=0.27607;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,4:15,4:1,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5043 chr8 64244709 . A G 0 PASS DP=62;GPV=1;SPV=0.064462;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:19,1:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5044 chr8 64353844 . C CATAT 0 PASS DP=27;GPV=1;SPV=0.12771;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,4:6,2:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5045 chr8 64448512 . A T 0 PASS DP=57;GPV=1;SPV=0.0014939;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:22,10:13,4:9,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5046 chr8 64940741 . G A 0 PASS DP=68;GPV=1;SPV=7.3665e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:23,13:9,5:14,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5047 chr8 64987657 . GC G 0 PASS DP=35;GPV=1;SPV=0.011528;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,7:8,3:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5048 chr8 65520675 . G GTT 0 PASS DP=33;GPV=1;SPV=0.12884;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,4:9,2:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5049 chr8 66042597 . CTCT C 0 PASS DP=28;GPV=1;SPV=0.0063768;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,8:2,1:4,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5050 chr8 66669119 . TTG T 0 PASS DP=35;GPV=1;SPV=0.0085545;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,9:4,6:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5051 chr8 67468626 . T TAA 0 PASS DP=73;GPV=1;SPV=0.064086;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:38,5:24,2:14,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5052 chr8 68164585 . C CTT 0 PASS DP=42;GPV=1;SPV=0.00048402;SS=2;SSC=33;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:12,12:8,10:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5053 chr8 68754470 . G T 0 PASS DP=63;GPV=1;SPV=0.0097212;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:33,13:18,5:15,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5054 chr8 71769341 . A G 0 PASS DP=36;GPV=1;SPV=0.15033;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:6,2:13,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5055 chr8 72299643 . C CT 0 PASS DP=30;GPV=1;SPV=0.16587;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:11,5:7,4:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5056 chr8 72491880 . G A 0 PASS DP=31;GPV=1;SPV=0.033794;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:8,4:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5057 chr8 72920437 . C T 0 PASS DP=29;GPV=1;SPV=0.20399;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:7,2:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5058 chr8 73479472 . G GCACACACACACACA 0 PASS DP=39;GPV=1;SPV=0.10766;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:7,1:12,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5059 chr8 73637520 . G GA 0 PASS DP=17;GPV=1;SPV=0.02028;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:2,6:1,5:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5060 chr8 73715467 . G A 0 PASS DP=48;GPV=1;SPV=0.10733;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:10,6:4,2:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5061 chr8 73948192 . C CA 0 PASS DP=64;GPV=1;SPV=0.011503;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:28,15:18,8:10,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5062 chr8 75626547 . C G 0 PASS DP=62;GPV=1;SPV=0.088975;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:34,5:24,3:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5063 chr8 75736176 . T C 0 PASS DP=67;GPV=1;SPV=0.00032719;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:28,17:12,12:16,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5064 chr8 78349627 . C CATAT 0 PASS DP=21;GPV=1;SPV=0.12771;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,4:4,2:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5065 chr8 78669967 . C CT 0 PASS DP=35;GPV=1;SPV=0.03895;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,9:5,7:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5066 chr8 78687702 . TTA T 0 PASS DP=41;GPV=1;SPV=0.14763;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:13,2:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5067 chr8 80545556 . C CTT 0 PASS DP=24;GPV=1;SPV=0.092234;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,6:5,4:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5068 chr8 81874625 . A T 0 PASS DP=42;GPV=1;SPV=0.049588;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:22,8:15,5:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5069 chr8 82014490 . CGT C 0 PASS DP=62;GPV=1;SPV=0.0014483;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:27,22:11,9:16,13
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5070 chr8 82551753 . G A 0 PASS DP=32;GPV=1;SPV=0.020486;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:6,2:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5071 chr8 83145260 . G GTATATA 0 PASS DP=40;GPV=1;SPV=0.029799;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:6,9:3,7:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5072 chr8 85043384 . G A 0 PASS DP=28;GPV=1;SPV=0.066667;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:5,1:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5073 chr8 85144402 . ATGTGTGTGTG A 0 PASS DP=29;GPV=1;SPV=0.076628;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:6,2:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5074 chr8 85647304 . T C 0 PASS DP=49;GPV=1;SPV=0.1121;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:25,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5075 chr8 85653372 . A T 0 PASS DP=309;GPV=1;SPV=0.047615;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:176:158,18:78,7:80,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5076 chr8 85805041 . G C 0 PASS DP=96;GPV=1;SPV=0.011546;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:39,14:7,3:32,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5077 chr8 86799977 . G A 0 PASS DP=61;GPV=1;SPV=0.00022484;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:22,13:14,3:8,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5078 chr8 88701671 . C G 0 PASS DP=37;GPV=1;SPV=0.1982;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:19,3:9,1:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5079 chr8 89552310 . TTTTTA T 0 PASS DP=61;GPV=1;SPV=0.02678;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:25,12:9,6:16,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5080 chr8 89836577 . T G 0 PASS DP=62;GPV=1;SPV=0.0092864;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:13,7:3,3:10,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5081 chr8 91576225 . T C 0 PASS DP=59;GPV=1;SPV=0.0016044;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,9:9,4:13,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5082 chr8 92496832 . C CTATATATATATATATATATA 0 PASS DP=20;GPV=1;SPV=0.046953;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:2,4:2,3:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5083 chr8 92704790 . G T 0 PASS DP=58;GPV=1;SPV=0.01467;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:24,6:12,2:12,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5084 chr8 94060351 . C CT 0 PASS DP=59;GPV=1;SPV=0.018659;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:23,14:11,11:12,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5085 chr8 94664120 . C CTTTT 0 PASS DP=27;GPV=1;SPV=0.22085;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:9,2:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5086 chr8 96216225 . TGAGAGAGAGAGAGA T 0 PASS DP=29;GPV=1;SPV=0.019231;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:3,9:2,3:1,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5087 chr8 96651281 . G A 0 PASS DP=70;GPV=1;SPV=1.9551e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:21,13:11,5:10,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5088 chr8 97001721 . CTT C 0 PASS DP=25;GPV=1;SPV=0.10277;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,5:8,3:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5089 chr8 97123023 . A T 0 PASS DP=45;GPV=1;SPV=0.11779;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:14,3:9,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5090 chr8 97782279 . CT C 0 PASS DP=23;GPV=1;SPV=0.017544;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,5:2,4:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5091 chr8 98306340 . TG T 0 PASS DP=66;GPV=1;SPV=0.0018313;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:24,8:11,6:13,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5092 chr8 98306342 . T C 0 PASS DP=58;GPV=1;SPV=0.0006486;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,9:10,7:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5093 chr8 98731722 . CA C 0 PASS DP=37;GPV=1;SPV=0.01905;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,8:11,6:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5094 chr8 99029062 . G A 0 PASS DP=48;GPV=1;SPV=0.0013028;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:15,15:9,12:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5095 chr8 99391587 . C A 0 PASS DP=69;GPV=1;SPV=9.8221e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:21,15:10,7:11,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5096 chr8 99693010 . C T 0 PASS DP=60;GPV=1;SPV=0.048707;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:14,2:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5097 chr8 99906834 . TTTTC T 0 PASS DP=52;GPV=1;SPV=0.00034333;SS=2;SSC=34;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:15,15:8,8:7,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5098 chr8 100453390 . A G 0 PASS DP=22;GPV=1;SPV=0.030075;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,5:4,4:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5099 chr8 100799021 . GGTTCTGGA G 0 PASS DP=62;GPV=1;SPV=0.00038629;SS=2;SSC=34;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:23,12:9,3:14,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5100 chr8 100799032 . ATGAGTT A 0 PASS DP=53;GPV=1;SPV=0.00017105;SS=2;SSC=37;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,11:7,2:9,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5101 chr8 100799042 . A T 0 PASS DP=60;GPV=1;SPV=1.2423e-05;SS=2;SSC=49;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:15,12:5,3:10,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5102 chr8 100799043 . G T 0 PASS DP=65;GPV=1;SPV=2.3992e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:17,11:5,3:12,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5103 chr8 101092767 . C CCTTT 0 PASS DP=34;GPV=1;SPV=0.035315;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:15,10:3,1:12,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5104 chr8 101350381 . G A 0 PASS DP=68;GPV=1;SPV=0.00011331;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:26,16:13,8:13,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5105 chr8 101350382 . A T 0 PASS DP=68;GPV=1;SPV=0.00022241;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:27,15:14,6:13,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5106 chr8 101435075 . A C 0 PASS DP=61;GPV=1;SPV=0.029233;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:29,6:11,3:18,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5107 chr8 101592100 . C CT 0 PASS DP=19;GPV=1;SPV=0.014884;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:3,8:3,7:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5108 chr8 104730453 . T TGAGAGAGAGAGAGAGA 0 PASS DP=29;GPV=1;SPV=0.063246;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:8,5:3,2:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5109 chr8 104820449 . C T 0 PASS DP=43;GPV=1;SPV=0.048994;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:15,6:12,5:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5110 chr8 106607793 . CTTTCTT C 0 PASS DP=36;GPV=1;SPV=0.1182;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,6:11,3:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5111 chr8 107370340 . A AAG 0 PASS DP=26;GPV=1;SPV=0.071429;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:17:1,4:1,3:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5112 chr8 108921397 . C T 0 PASS DP=41;GPV=1;SPV=0.20218;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:7,2:17,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5113 chr8 109828580 . G T 0 PASS DP=63;GPV=1;SPV=4.6321e-06;SS=2;SSC=53;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:17,15:8,10:9,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5114 chr8 109901978 . A G 0 PASS DP=64;GPV=1;SPV=0.01619;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:33,9:13,5:20,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5115 chr8 110283401 . A G 0 PASS DP=52;GPV=1;SPV=0.0044741;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:3,2:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5116 chr8 111126098 . TCTTTCTTTC T 0 PASS DP=30;GPV=1;SPV=0.35714;SS=2;SSC=4;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:3,2:1,1:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5117 chr8 112410676 . G GTA 0 PASS DP=38;GPV=1;SPV=0.10365;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,5:9,3:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5118 chr8 112697054 . G A 0 PASS DP=61;GPV=1;SPV=0.0007924;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:15,14:8,10:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5119 chr8 113683904 . C CAAA 0 PASS DP=38;GPV=1;SPV=0.013906;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:13,11:7,8:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5120 chr8 114237562 . C T 0 PASS DP=71;GPV=1;SPV=0.043486;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:20,5:8,4:12,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5121 chr8 115900857 . T A 0 PASS DP=46;GPV=1;SPV=0.27273;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:4,2:0,0:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5122 chr8 116365598 . GAGAAAGAAAGAA G 0 PASS DP=36;GPV=1;SPV=0.10447;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,4:16,3:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5123 chr8 116448122 . TTG T 0 PASS DP=51;GPV=1;SPV=0.021522;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:22,12:8,7:14,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5124 chr8 117221960 . G T 0 PASS DP=71;GPV=1;SPV=0.032384;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:15,2:12,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5125 chr8 117221961 . G T 0 PASS DP=73;GPV=1;SPV=0.037595;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:17,2:12,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5126 chr8 117565353 . T A 0 PASS DP=78;GPV=1;SPV=3.7597e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:29,16:15,6:14,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5127 chr8 118880173 . TTTTGG T 0 PASS DP=65;GPV=1;SPV=0.0071887;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:24,6:15,4:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5128 chr8 120735001 . G C 0 PASS DP=59;GPV=1;SPV=1.418e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:17,15:10,8:7,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5129 chr8 120910420 . CAAA C 0 PASS DP=44;GPV=1;SPV=0.06523;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:12,2:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5130 chr8 121157153 . CA C 0 PASS DP=68;GPV=1;SPV=0.035018;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:33,10:12,7:21,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5131 chr8 122591841 . TATC T 0 PASS DP=66;GPV=1;SPV=0.11412;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:19,3:16,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5132 chr8 122633191 . C G 0 PASS DP=66;GPV=1;SPV=0.003361;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:28,9:16,5:12,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5133 chr8 122959716 . T C 0 PASS DP=63;GPV=1;SPV=0.00094257;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:27,14:11,8:16,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5134 chr8 123412602 . A AT 0 PASS DP=52;GPV=1;SPV=0.0077776;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:22,8:8,4:14,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5135 chr8 123918684 . C T 0 PASS DP=37;GPV=1;SPV=0.0032051;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:10,15:7,13:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5136 chr8 124302728 . TTC T 0 PASS DP=64;GPV=1;SPV=0.01289;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,5:12,4:11,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5137 chr8 124916973 . TC T 0 PASS DP=47;GPV=1;SPV=0.35142;SS=2;SSC=4;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:9,1:22,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5138 chr8 125349584 . A T 0 PASS DP=56;GPV=1;SPV=0.10714;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:1,2:0,1:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5139 chr8 126143332 . C A 0 PASS DP=34;GPV=1;SPV=0.15398;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,4:8,3:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5140 chr8 127175345 . TA T 0 PASS DP=57;GPV=1;SPV=0.091036;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:20,2:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5141 chr8 127175347 . C G 0 PASS DP=59;GPV=1;SPV=0.089909;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:18,2:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5142 chr8 129304758 . C A 0 PASS DP=71;GPV=1;SPV=0.047619;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:36:0,3:0,1:0,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5143 chr8 130573544 . ATCTCTCTCTC A 0 PASS DP=36;GPV=1;SPV=0.15773;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,4:5,1:13,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5144 chr8 130801899 . C CTT 0 PASS DP=26;GPV=1;SPV=0.0061246;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:6,9:2,5:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5145 chr8 131216346 . T TATAC 0 PASS DP=31;GPV=1;SPV=0.0071396;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:7,7:4,6:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5146 chr8 131377543 . A G 0 PASS DP=59;GPV=1;SPV=0.05558;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:29,5:15,2:14,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5147 chr8 131639936 . T C 0 PASS DP=35;GPV=1;SPV=0.13971;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:8,1:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5148 chr8 132542395 . C CAAA 0 PASS DP=43;GPV=1;SPV=0.026907;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,8:10,7:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5149 chr8 132549534 . GA G 0 PASS DP=41;GPV=1;SPV=0.14763;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:13,3:9,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5150 chr8 133214049 . TAG T 0 PASS DP=90;GPV=1;SPV=0.029399;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:29,12:11,5:18,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5151 chr8 134243262 . AAG A 0 PASS DP=22;GPV=1;SPV=0.068111;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,5:5,3:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5152 chr8 135536997 . AGG A 0 PASS DP=24;GPV=1;SPV=0.32353;SS=2;SSC=4;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,5:2,3:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5153 chr8 135691995 . T G 0 PASS DP=54;GPV=1;SPV=0.1143;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:17,4:11,2:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5154 chr8 136228066 . G A 0 PASS DP=65;GPV=1;SPV=0.29371;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:6,3:1,1:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5155 chr8 136781865 . AAAAG A 0 PASS DP=46;GPV=1;SPV=0.047988;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:15,3:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5156 chr8 136991676 . CTATA C 0 PASS DP=28;GPV=1;SPV=0.087179;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,5:9,4:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5157 chr8 137234263 . CTT C 0 PASS DP=20;GPV=1;SPV=0.05418;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,4:6,3:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5158 chr8 137351941 . G T 0 PASS DP=65;GPV=1;SPV=3.548e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:19,18:12,10:7,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5159 chr8 138488114 . C T 0 PASS DP=70;GPV=1;SPV=0.00012009;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:26,14:13,6:13,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5160 chr8 138692238 . G A 0 PASS DP=17;GPV=1;SPV=0.052941;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:0,1:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5161 chr8 139390447 . A AAT 0 PASS DP=26;GPV=1;SPV=0.20798;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,5:5,3:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5162 chr8 139947894 . G GTGTGTATATATATATATA 0 PASS DP=26;GPV=1;SPV=0.094203;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,4:3,1:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5163 chr8 141955871 . T C 0 PASS DP=52;GPV=1;SPV=0.08744;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,4:13,2:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5164 chr8 142017388 . G T 0 PASS DP=42;GPV=1;SPV=0.2164;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:19,4:9,2:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5165 chr8 142184794 . G C 0 PASS DP=60;GPV=1;SPV=0.10478;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:36,6:16,3:20,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5166 chr8 142509099 . G A 0 PASS DP=88;GPV=1;SPV=3.791e-08;SS=2;SSC=74;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:24,21:13,12:11,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5167 chr8 142857811 . T G 0 PASS DP=58;GPV=1;SPV=0.014457;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:22,13:8,10:14,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5168 chr8 143054303 . C CA 0 PASS DP=20;GPV=1;SPV=0.10217;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:7,3:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5169 chr8 143307170 . C CAGAGA 0 PASS DP=43;GPV=1;SPV=0.1184;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,4:7,2:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5170 chr8 143492777 . G C 0 PASS DP=37;GPV=1;SPV=0.097509;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:6,2:13,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5171 chr8 143981349 . A G 0 PASS DP=48;GPV=1;SPV=0.02087;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:6,6:0,3:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5172 chr8 144558818 . A T 0 PASS DP=43;GPV=1;SPV=0.0036228;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,9:10,8:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5173 chr8 144769254 . A C 0 PASS DP=32;GPV=1;SPV=0.50909;SS=2;SSC=2;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:6,2:5,1:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5174 chr9 17614 . CT C 0 PASS DP=45;GPV=1;SPV=0.064412;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:25,8:16,1:9,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5175 chr9 135690 . A G 0 PASS DP=24;GPV=1;SPV=0.070652;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:6,4:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5176 chr9 150120 . TG T 0 PASS DP=24;GPV=1;SPV=0.23366;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,5:4,2:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5177 chr9 610712 . G C 0 PASS DP=76;GPV=1;SPV=3.3767e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:26,14:11,7:15,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5178 chr9 631009 . A C 0 PASS DP=54;GPV=1;SPV=2.3898e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:15,14:10,7:5,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5179 chr9 883627 . C CA 0 PASS DP=40;GPV=1;SPV=0.053015;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:9,2:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5180 chr9 1006623 . C CT 0 PASS DP=41;GPV=1;SPV=0.0047817;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,9:7,3:8,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5181 chr9 1475189 . A ATTTATTTATTTATTTATTATTTATTTATTTTT 0 PASS DP=56;GPV=1;SPV=0.058083;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:28,7:10,4:18,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5182 chr9 2492304 . C CAAAATAAAATAAAATAAAAT 0 PASS DP=51;GPV=1;SPV=0.050318;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:26,6:10,3:16,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5183 chr9 3414735 . T TGA 0 PASS DP=60;GPV=1;SPV=0.040297;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:26,8:12,4:14,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5184 chr9 3499438 . T A 0 PASS DP=67;GPV=1;SPV=0.0014416;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:30,13:16,7:14,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5185 chr9 4867760 . C G 0 PASS DP=59;GPV=1;SPV=3.0166e-06;SS=2;SSC=55;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:14,14:4,6:10,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5186 chr9 6627295 . CAA C 0 PASS DP=48;GPV=1;SPV=0.045968;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,6:12,4:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5187 chr9 8279044 . T G 0 PASS DP=71;GPV=1;SPV=0.00058098;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:32,18:13,11:19,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5188 chr9 8678373 . T A 0 PASS DP=62;GPV=1;SPV=0.00091926;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,8:10,5:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5189 chr9 9398814 . G A 0 PASS DP=72;GPV=1;SPV=0.0033001;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:28,18:15,6:13,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5190 chr9 9533471 . T A 0 PASS DP=74;GPV=1;SPV=8.3077e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:28,15:18,8:10,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5191 chr9 10479652 . A C 0 PASS DP=53;GPV=1;SPV=0.048435;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:22,7:13,4:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5192 chr9 10654810 . CTT C 0 PASS DP=30;GPV=1;SPV=0.22398;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,4:10,2:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5193 chr9 11277229 . C T 0 PASS DP=91;GPV=1;SPV=2.5613e-07;SS=2;SSC=65;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:28,20:15,11:13,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5194 chr9 12477748 . G A 0 PASS DP=49;GPV=1;SPV=0.19313;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:12,1:17,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5195 chr9 12644557 . AT A 0 PASS DP=47;GPV=1;SPV=0.083817;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:8,3:14,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5196 chr9 12888967 . C A 0 PASS DP=78;GPV=1;SPV=0.00018187;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:29,12:16,5:13,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5197 chr9 13245425 . AAG A 0 PASS DP=54;GPV=1;SPV=0.11371;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:10,2:18,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5198 chr9 14099964 . C A 0 PASS DP=73;GPV=1;SPV=0.0048945;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:36,11:19,8:17,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5199 chr9 15420424 . C A 0 PASS DP=41;GPV=1;SPV=0.070707;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:3,5:2,3:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5200 chr9 15490682 . CA C 0 PASS DP=35;GPV=1;SPV=0.019341;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,9:8,8:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5201 chr9 15565387 . T G 0 PASS DP=76;GPV=1;SPV=7.6915e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:28,14:17,11:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5202 chr9 15847796 . A T 0 PASS DP=71;GPV=1;SPV=0.00065457;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:28,11:16,4:12,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5203 chr9 16780235 . C CAA 0 PASS DP=28;GPV=1;SPV=0.032647;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:8,10:6,9:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5204 chr9 17035051 . CT C 0 PASS DP=25;GPV=1;SPV=0.18814;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:7,3:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5205 chr9 17554265 . C T 0 PASS DP=17;GPV=1;SPV=0.036405;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:3,6:2,3:1,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5206 chr9 18249138 . A G 0 PASS DP=66;GPV=1;SPV=0.00058845;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:27,13:10,4:17,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5207 chr9 19642986 . CTT C 0 PASS DP=36;GPV=1;SPV=0.0046784;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:6,10:3,8:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5208 chr9 19690937 . C G 0 PASS DP=68;GPV=1;SPV=0.1773;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:43,5:23,4:20,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5209 chr9 19823297 . TTG T 0 PASS DP=46;GPV=1;SPV=0.0026316;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:6,16:4,9:2,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5210 chr9 20778089 . CAAAAAA C 0 PASS DP=41;GPV=1;SPV=0.021122;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:5,6:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5211 chr9 20839206 . ATAAGGTT A 0 PASS DP=56;GPV=1;SPV=0.074614;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:19,1:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5212 chr9 21070864 . C T 0 PASS DP=52;GPV=1;SPV=0.031062;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:11,2:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5213 chr9 23136393 . G GTTT 0 PASS DP=25;GPV=1;SPV=0.20798;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,4:6,1:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5214 chr9 25239131 . T G 0 PASS DP=55;GPV=1;SPV=0.0010863;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,9:8,6:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5215 chr9 25786660 . GTATATATGTGTGTA G 0 PASS DP=23;GPV=1;SPV=0.016624;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:5,9:3,4:2,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5216 chr9 25786672 . GTA G 0 PASS DP=21;GPV=1;SPV=0.0079365;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:12:0,4:0,3:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5217 chr9 25788984 . T A 0 PASS DP=55;GPV=1;SPV=0.047619;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:34:0,2:0,0:0,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5218 chr9 26376144 . AAATAAT A 0 PASS DP=55;GPV=1;SPV=0.0044832;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:24,10:11,5:13,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5219 chr9 28285398 . A AT 0 PASS DP=31;GPV=1;SPV=0.023788;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:9,12:6,5:3,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5220 chr9 28509694 . G A 0 PASS DP=52;GPV=1;SPV=0.023333;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:23,6:15,4:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5221 chr9 29476648 . C T 0 PASS DP=64;GPV=1;SPV=0.092709;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:16,2:16,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5222 chr9 29935284 . C CTTT 0 PASS DP=25;GPV=1;SPV=0.045455;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:2,7:0,6:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5223 chr9 32450961 . T TATCA 0 PASS DP=51;GPV=1;SPV=0.01362;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:16,12:6,4:10,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5224 chr9 33895768 . C T 0 PASS DP=21;GPV=1;SPV=0.030303;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:12:2,6:1,2:1,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5225 chr9 34210733 . A T 0 PASS DP=50;GPV=1;SPV=0.10313;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:5,2:20,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5226 chr9 34756282 . AG A 0 PASS DP=40;GPV=1;SPV=0.026993;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,9:6,1:9,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5227 chr9 35767283 . G GT 0 PASS DP=32;GPV=1;SPV=0.024499;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:6,8:3,5:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5228 chr9 36311553 . CTTTCT C 0 PASS DP=35;GPV=1;SPV=0.036146;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,10:6,6:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5229 chr9 37074509 . C CAT 0 PASS DP=29;GPV=1;SPV=0.088889;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,4:6,3:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5230 chr9 38719064 . C T 0 PASS DP=55;GPV=1;SPV=0.00078693;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:22,15:9,8:13,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5231 chr9 38802021 . AT A 0 PASS DP=79;GPV=1;SPV=0.033452;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:31,11:19,4:12,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5232 chr9 38822788 . A AAATATAT 0 PASS DP=27;GPV=1;SPV=0.027634;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:2,10:2,6:0,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5233 chr9 38889913 . A AGTGT 0 PASS DP=81;GPV=1;SPV=0.024807;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:17,9:9,4:8,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5234 chr9 38899476 . C T 0 PASS DP=53;GPV=1;SPV=0.070703;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:29,6:17,2:12,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5235 chr9 38979322 . C A 0 PASS DP=47;GPV=1;SPV=0.092902;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,5:1,1:24,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5236 chr9 39013532 . TCTTGG T 0 PASS DP=112;GPV=1;SPV=0.022332;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:73:55,18:23,4:32,14
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5237 chr9 39556183 . G A 0 PASS DP=44;GPV=1;SPV=0.15083;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:11,3:13,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5238 chr9 39606028 . C T 0 PASS DP=56;GPV=1;SPV=0.05999;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:30,6:19,5:11,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5239 chr9 40107877 . C A 0 PASS DP=37;GPV=1;SPV=0.12189;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:8,2:12,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5240 chr9 40345499 . A T 0 PASS DP=39;GPV=1;SPV=0.0096036;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:13,12:10,9:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5241 chr9 40388287 . C G 0 PASS DP=49;GPV=1;SPV=0.0092175;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:16,13:7,7:9,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5242 chr9 40565850 . C G 0 PASS DP=17;GPV=1;SPV=0.036405;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:3,6:1,1:2,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5243 chr9 40705936 . A T 0 PASS DP=67;GPV=1;SPV=0.0366;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:28,7:14,2:14,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5244 chr9 40721859 . T C 0 PASS DP=65;GPV=1;SPV=0.028729;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:35,8:19,4:16,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5245 chr9 40932869 . AAAAAAAAAAAAAACAAAAC A 0 PASS DP=22;GPV=1;SPV=0.031734;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,6:4,4:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5246 chr9 40948837 . C T 0 PASS DP=190;GPV=1;SPV=0.0032124;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:107:83,24:45,13:38,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5247 chr9 40956565 . G A 0 PASS DP=145;GPV=1;SPV=0.007587;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:86:77,9:32,1:45,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5248 chr9 40996359 . C G 0 PASS DP=290;GPV=1;SPV=0.014283;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:175:151,24:53,7:98,17
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5249 chr9 41057672 . C T 0 PASS DP=45;GPV=1;SPV=0.084902;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:15,1:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5250 chr9 41140582 . T C 0 PASS DP=34;GPV=1;SPV=0.011208;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,8:6,3:7,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5251 chr9 41249409 . G GAA 0 PASS DP=94;GPV=1;SPV=0.0044113;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:30,12:16,7:14,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5252 chr9 41296023 . G A 0 PASS DP=152;GPV=1;SPV=0.041703;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:80:71,9:26,4:45,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5253 chr9 41299045 . A C 0 PASS DP=196;GPV=1;SPV=0.04204;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:106:88,18:39,3:49,15
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5254 chr9 41374611 . A G 0 PASS DP=63;GPV=1;SPV=0.047669;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:29,8:16,1:13,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5255 chr9 41442897 . C G 0 PASS DP=64;GPV=1;SPV=0.043132;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:11,3:15,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5256 chr9 41654836 . G T 0 PASS DP=66;GPV=1;SPV=0.039649;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:24,10:15,3:9,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5257 chr9 41781351 . G A 0 PASS DP=59;GPV=1;SPV=0.045726;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:25,7:9,1:16,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5258 chr9 41805818 . G A 0 PASS DP=34;GPV=1;SPV=0.029433;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:10,4:1,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5259 chr9 41931650 . T G 0 PASS DP=91;GPV=1;SPV=0.016221;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:60:41,19:26,9:15,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5260 chr9 42395473 . C G 0 PASS DP=125;GPV=1;SPV=0.040321;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:63:53,10:29,2:24,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5261 chr9 42401563 . C G 0 PASS DP=89;GPV=1;SPV=0.03885;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:44,13:15,2:29,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5262 chr9 42402845 . C A 0 PASS DP=123;GPV=1;SPV=0.039337;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:72:55,17:34,15:21,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5263 chr9 42405150 . A AC 0 PASS DP=126;GPV=1;SPV=0.021276;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:66:48,15:20,9:28,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5264 chr9 42439163 . C A 0 PASS DP=67;GPV=1;SPV=0.012793;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:27,9:11,5:16,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5265 chr9 42853307 . C CTTT 0 PASS DP=25;GPV=1;SPV=0.092308;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:5,6:3,3:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5266 chr9 43001066 . A G 0 PASS DP=222;GPV=1;SPV=0.021814;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:135:110,25:68,16:42,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5267 chr9 43036676 . G A 0 PASS DP=61;GPV=1;SPV=0.046772;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:29,5:17,3:12,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5268 chr9 43757652 . A T 0 PASS DP=255;GPV=1;SPV=0.0050999;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:161:129,32:41,16:88,16
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5269 chr9 44100356 . A G 0 PASS DP=145;GPV=1;SPV=0.0021853;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:92:69,23:17,5:52,18
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5270 chr9 44146623 . G C 0 PASS DP=27;GPV=1;SPV=0.22085;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:15,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5271 chr9 44629853 . A C 0 PASS DP=24;GPV=1;SPV=0.17128;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:0,0:12,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5272 chr9 44695983 . G A 0 PASS DP=16;GPV=1;SPV=0.23333;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:6,2:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5273 chr9 44945238 . T A 0 PASS DP=22;GPV=1;SPV=0.022999;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,6:2,1:5,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5274 chr9 45075668 . C T 0 PASS DP=68;GPV=1;SPV=0.090639;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:34,4:34,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5275 chr9 45188123 . C G 0 PASS DP=152;GPV=1;SPV=0.025746;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:89:77,12:70,8:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5276 chr9 61214167 . A G 0 PASS DP=96;GPV=1;SPV=0.033582;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:38,8:21,5:17,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5277 chr9 61562470 . C A 0 PASS DP=50;GPV=1;SPV=0.031046;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:13,3:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5278 chr9 61562505 . G GAA 0 PASS DP=45;GPV=1;SPV=0.0019167;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:13,11:9,9:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5279 chr9 61793845 . G A 0 PASS DP=25;GPV=1;SPV=0.037681;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,5:5,2:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5280 chr9 61814971 . C T 0 PASS DP=38;GPV=1;SPV=0.011236;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,10:3,4:13,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5281 chr9 62717344 . T C 0 PASS DP=28;GPV=1;SPV=0.016425;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,7:4,6:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5282 chr9 62814849 . G T 0 PASS DP=240;GPV=1;SPV=0.014437;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:116:96,20:45,9:51,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5283 chr9 62822122 . TAC T 0 PASS DP=169;GPV=1;SPV=0.014311;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:95:85,10:34,6:51,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5284 chr9 62833027 . T C 0 PASS DP=41;GPV=1;SPV=0.00079103;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:11,7:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5285 chr9 62833039 . C T 0 PASS DP=38;GPV=1;SPV=0.021122;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:11,6:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5286 chr9 62848844 . T C 0 PASS DP=54;GPV=1;SPV=0.062847;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:29,6:19,5:10,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5287 chr9 62848863 . G A 0 PASS DP=44;GPV=1;SPV=0.041933;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,6:12,5:9,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5288 chr9 62866765 . CTACT C 0 PASS DP=202;GPV=1;SPV=0.034526;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:112:96,16:54,12:42,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5289 chr9 62884140 . A G 0 PASS DP=129;GPV=1;SPV=0.0031077;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:67:50,17:30,10:20,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5290 chr9 62923168 . A G 0 PASS DP=37;GPV=1;SPV=0.057896;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,6:12,3:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5291 chr9 62925388 . G A 0 PASS DP=17;GPV=1;SPV=0.052941;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:5,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5292 chr9 63433982 . G A 0 PASS DP=58;GPV=1;SPV=0.15567;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:20,1:13,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5293 chr9 63646962 . G A 0 PASS DP=76;GPV=1;SPV=0.071233;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:36,4:22,2:14,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5294 chr9 63710394 . G A 0 PASS DP=82;GPV=1;SPV=0.039935;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:43,6:20,5:23,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5295 chr9 63710417 . GAA G 0 PASS DP=69;GPV=1;SPV=0.013018;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:31,7:17,5:14,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5296 chr9 63719863 . G A 0 PASS DP=80;GPV=1;SPV=0.067749;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:46,6:30,4:16,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5297 chr9 63737243 . C G 0 PASS DP=120;GPV=1;SPV=0.014912;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:67:53,14:30,8:23,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5298 chr9 63764708 . G T 0 PASS DP=268;GPV=1;SPV=0.044983;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:145:120,18:65,11:55,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5299 chr9 63796180 . C G 0 PASS DP=199;GPV=1;SPV=0.026718;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:121:101,20:66,17:35,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5300 chr9 63868747 . G A 0 PASS DP=164;GPV=1;SPV=0.049948;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:86:71,15:25,7:46,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5301 chr9 63888826 . AT A 0 PASS DP=109;GPV=1;SPV=0.0092268;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:64:50,14:25,9:25,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5302 chr9 63888832 . AT A 0 PASS DP=105;GPV=1;SPV=0.030182;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:43,14:22,9:21,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5303 chr9 63996274 . T A 0 PASS DP=81;GPV=1;SPV=0.042222;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:44,12:20,6:24,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5304 chr9 64079341 . TA T 0 PASS DP=91;GPV=1;SPV=0.024638;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:44,14:28,8:16,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5305 chr9 64416952 . C T 0 PASS DP=36;GPV=1;SPV=0.018733;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,9:10,5:2,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5306 chr9 64724762 . CGATGAGATGAAATGAAAG C 0 PASS DP=74;GPV=1;SPV=0.045506;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:18,3:13,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5307 chr9 65577304 . A T 0 PASS DP=88;GPV=1;SPV=0.022644;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:42,6:20,2:22,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5308 chr9 65657817 . G A 0 PASS DP=176;GPV=1;SPV=0.0021668;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:113:89,24:56,13:33,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5309 chr9 65661656 . T G 0 PASS DP=95;GPV=1;SPV=0.017969;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:36,11:24,4:12,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5310 chr9 65705007 . T A 0 PASS DP=72;GPV=1;SPV=0.033332;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:30,7:16,6:14,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5311 chr9 65705611 . T C 0 PASS DP=29;GPV=1;SPV=0.076628;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:4,1:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5312 chr9 65705808 . A G 0 PASS DP=31;GPV=1;SPV=0.15398;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:9,1:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5313 chr9 65711220 . C G 0 PASS DP=44;GPV=1;SPV=0.041933;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,6:9,1:12,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5314 chr9 65718033 . G C 0 PASS DP=46;GPV=1;SPV=0.0031863;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,7:8,3:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5315 chr9 65727083 . C G 0 PASS DP=58;GPV=1;SPV=0.0013435;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:21,9:11,7:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5316 chr9 65737116 . A G 0 PASS DP=121;GPV=1;SPV=0.00071876;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:69:51,18:28,12:23,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5317 chr9 65737280 . G A 0 PASS DP=170;GPV=1;SPV=0.0016525;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:103:84,19:40,5:44,14
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5318 chr9 65938797 . A G 0 PASS DP=37;GPV=1;SPV=0.016673;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,6:8,5:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5319 chr9 66013526 . A G 0 PASS DP=47;GPV=1;SPV=0.11479;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:13,2:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5320 chr9 66030237 . C CT 0 PASS DP=62;GPV=1;SPV=0.039894;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:28,5:5,3:23,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5321 chr9 66036762 . A G 0 PASS DP=50;GPV=1;SPV=0.046334;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:25,6:9,1:16,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5322 chr9 66066173 . T C 0 PASS DP=26;GPV=1;SPV=0.080632;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:0,1:12,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5323 chr9 66182996 . T C 0 PASS DP=41;GPV=1;SPV=0.03942;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,8:6,5:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5324 chr9 66701874 . T G 0 PASS DP=78;GPV=1;SPV=0.081109;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:43,5:14,4:29,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5325 chr9 66736184 . C A 0 PASS DP=31;GPV=1;SPV=0.12318;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:6,1:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5326 chr9 66784006 . TTTTCA T 0 PASS DP=99;GPV=1;SPV=0.043181;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:48,11:29,6:19,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5327 chr9 66972569 . C T 0 PASS DP=32;GPV=1;SPV=0.16643;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:7,3:10,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5328 chr9 67016723 . C A 0 PASS DP=41;GPV=1;SPV=0.13115;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,5:9,4:14,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5329 chr9 67052196 . C T 0 PASS DP=36;GPV=1;SPV=0.046295;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,9:10,4:4,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5330 chr9 67093077 . A G 0 PASS DP=29;GPV=1;SPV=0.16319;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:6,3:9,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5331 chr9 67718107 . G C 0 PASS DP=58;GPV=1;SPV=0.041156;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:24,7:10,2:14,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5332 chr9 67768365 . T C 0 PASS DP=29;GPV=1;SPV=0.037648;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:9,12:2,9:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5333 chr9 67795173 . A G 0 PASS DP=116;GPV=1;SPV=0.011526;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:71:59,12:52,10:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5334 chr9 67795720 . C T 0 PASS DP=120;GPV=1;SPV=0.019038;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:66:57,9:30,2:27,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5335 chr9 67799872 . T A 0 PASS DP=25;GPV=1;SPV=0.18814;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:13,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5336 chr9 67834210 . A G 0 PASS DP=34;GPV=1;SPV=0.0059543;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:9,4:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5337 chr9 67908450 . G A 0 PASS DP=66;GPV=1;SPV=0.031136;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:29,5:11,1:18,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5338 chr9 68228213 . T C 0 PASS DP=50;GPV=1;SPV=0.054928;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:4,3:17,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5339 chr9 68229021 . G A 0 PASS DP=27;GPV=1;SPV=0.0219;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:6,4:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5340 chr9 68251080 . TAA T 0 PASS DP=29;GPV=1;SPV=0.0032306;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:5,11:4,7:1,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5341 chr9 68327930 . A T 0 PASS DP=23;GPV=1;SPV=0.11304;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:0,0:10,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5342 chr9 68340716 . G A 0 PASS DP=65;GPV=1;SPV=0.077337;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:16,2:15,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5343 chr9 71421732 . C A 0 PASS DP=65;GPV=1;SPV=0.0010255;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:25,10:14,6:11,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5344 chr9 71504898 . G A 0 PASS DP=79;GPV=1;SPV=0.029196;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:35,5:19,1:16,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5345 chr9 71896705 . T C 0 PASS DP=52;GPV=1;SPV=0.10123;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:13,3:13,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5346 chr9 72009559 . C CAAAA 0 PASS DP=31;GPV=1;SPV=0.076628;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,4:6,3:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5347 chr9 73341705 . G C 0 PASS DP=68;GPV=1;SPV=8.4162e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:21,11:9,7:12,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5348 chr9 73515622 . A T 0 PASS DP=77;GPV=1;SPV=5.9884e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:31,19:15,9:16,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5349 chr9 74045713 . C T 0 PASS DP=49;GPV=1;SPV=0.47009;SS=2;SSC=3;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:19,3:15,2:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5350 chr9 74346766 . G A 0 PASS DP=55;GPV=1;SPV=0.06964;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:8,3:17,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5351 chr9 75534913 . CA C 0 PASS DP=37;GPV=1;SPV=0.025116;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,9:11,8:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5352 chr9 76246341 . CA C 0 PASS DP=29;GPV=1;SPV=0.03285;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,6:6,5:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5353 chr9 76670533 . ACTGGGTGGAGCC A 0 PASS DP=66;GPV=1;SPV=0.00019486;SS=2;SSC=37;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:25,14:7,8:18,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5354 chr9 76991341 . C CA 0 PASS DP=33;GPV=1;SPV=0.023788;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,8:2,5:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5355 chr9 77828982 . A T 0 PASS DP=63;GPV=1;SPV=0.00031429;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:22,11:14,9:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5356 chr9 78299496 . C CT 0 PASS DP=28;GPV=1;SPV=0.042236;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,8:6,7:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5357 chr9 78445867 . C CT 0 PASS DP=30;GPV=1;SPV=0.049017;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:6,4:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5358 chr9 78873962 . A G 0 PASS DP=60;GPV=1;SPV=0.15137;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:34,4:26,1:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5359 chr9 79100925 . T G 0 PASS DP=58;GPV=1;SPV=0.00010916;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:20,15:7,5:13,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5360 chr9 79855857 . C CAA 0 PASS DP=34;GPV=1;SPV=0.042772;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,6:8,5:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5361 chr9 80543668 . T TG 0 PASS DP=26;GPV=1;SPV=0.033948;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:7,9:3,5:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5362 chr9 80635888 . T C 0 PASS DP=45;GPV=1;SPV=0.0037889;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:13,22:5,14:8,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5363 chr9 81711106 . C A 0 PASS DP=47;GPV=1;SPV=0.03707;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,7:5,5:13,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5364 chr9 82017416 . C T 0 PASS DP=35;GPV=1;SPV=0.089245;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:10,5:5,4:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5365 chr9 82069960 . C CTT 0 PASS DP=31;GPV=1;SPV=0.024318;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:9,7:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5366 chr9 82245858 . C A 0 PASS DP=64;GPV=1;SPV=0.00056109;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:24,11:12,6:12,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5367 chr9 82426748 . T G 0 PASS DP=50;GPV=1;SPV=0.012882;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:9,7:5,1:4,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5368 chr9 82850318 . G GA 0 PASS DP=47;GPV=1;SPV=0.039683;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:29:0,4:0,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5369 chr9 83144395 . A G 0 PASS DP=53;GPV=1;SPV=0.082705;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:28,5:19,3:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5370 chr9 83207598 . CT C 0 PASS DP=22;GPV=1;SPV=0.031734;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,6:4,4:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5371 chr9 83283546 . A T 0 PASS DP=57;GPV=1;SPV=0.018648;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:3,5:1,4:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5372 chr9 84079103 . T G 0 PASS DP=46;GPV=1;SPV=0.14555;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:15,2:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5373 chr9 84833223 . T C 0 PASS DP=42;GPV=1;SPV=0.00042668;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:10,18:7,12:3,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5374 chr9 85504896 . CT C 0 PASS DP=29;GPV=1;SPV=0.097916;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:9,4:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5375 chr9 86039133 . A G 0 PASS DP=73;GPV=1;SPV=0.0012814;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:28,9:15,7:13,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5376 chr9 86535101 . TCTTCCCTTCCCTTCC T 0 PASS DP=31;GPV=1;SPV=0.011783;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,5:3,1:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5377 chr9 87097720 . T TC 0 PASS DP=38;GPV=1;SPV=0.22547;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,5:14,3:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5378 chr9 87260584 . C CA 0 PASS DP=49;GPV=1;SPV=0.011976;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:12,8:6,7:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5379 chr9 87435688 . C T 0 PASS DP=81;GPV=1;SPV=7.7888e-06;SS=2;SSC=51;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:26,15:11,6:15,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5380 chr9 87684571 . C G 0 PASS DP=98;GPV=1;SPV=2.7845e-08;SS=2;SSC=75;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:64:32,32:16,14:16,18
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5381 chr9 87853662 . A AGATCCTATAG 0 PASS DP=55;GPV=1;SPV=0.044481;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:22,10:10,3:12,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5382 chr9 88493746 . C CA 0 PASS DP=48;GPV=1;SPV=0.016238;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,7:10,6:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5383 chr9 88935927 . AATATATATAT A 0 PASS DP=38;GPV=1;SPV=0.027415;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:6,10:4,7:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5384 chr9 89205267 . G GCA 0 PASS DP=25;GPV=1;SPV=0.11404;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,5:7,4:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5385 chr9 89450665 . A G 0 PASS DP=22;GPV=1;SPV=0.21212;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,3:3,2:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5386 chr9 89707561 . T C 0 PASS DP=37;GPV=1;SPV=0.009628;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:10,10:4,1:6,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5387 chr9 89749664 . G GCACA 0 PASS DP=54;GPV=1;SPV=0.037551;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:24,5:16,3:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5388 chr9 90324141 . C CTT 0 PASS DP=31;GPV=1;SPV=0.0077399;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:4,9:0,8:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5389 chr9 90418116 . AC A 0 PASS DP=49;GPV=1;SPV=0.0038805;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,6:4,2:11,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5390 chr9 91147616 . C T 0 PASS DP=53;GPV=1;SPV=0.18132;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:7,5:2,1:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5391 chr9 91786928 . G GA 0 PASS DP=74;GPV=1;SPV=3.8667e-06;SS=2;SSC=54;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:23,17:10,5:13,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5392 chr9 92033194 . G A 0 PASS DP=64;GPV=1;SPV=1.57e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:18,13:12,5:6,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5393 chr9 92201546 . G C 0 PASS DP=36;GPV=1;SPV=0.0038917;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,9:5,3:2,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5394 chr9 93828680 . C A 0 PASS DP=65;GPV=1;SPV=0.00087744;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:23,9:15,1:8,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5395 chr9 95304749 . CA C 0 PASS DP=35;GPV=1;SPV=0.07313;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,5:8,4:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5396 chr9 95740046 . G C 0 PASS DP=77;GPV=1;SPV=2.1631e-06;SS=2;SSC=56;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:24,18:9,10:15,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5397 chr9 97330066 . C CA 0 PASS DP=41;GPV=1;SPV=0.034438;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,8:5,7:9,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5398 chr9 97990814 . CT C 0 PASS DP=24;GPV=1;SPV=0.12846;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:6,2:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5399 chr9 98392958 . C CA 0 PASS DP=53;GPV=1;SPV=0.02607;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:11,4:1,0:10,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5400 chr9 98579949 . G C 0 PASS DP=78;GPV=1;SPV=0.00037569;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:28,10:15,2:13,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5401 chr9 98648116 . T TGTGTGTGTGTGTGTATAG 0 PASS DP=27;GPV=1;SPV=0.06993;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:4,6:4,2:0,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5402 chr9 99360131 . T G 0 PASS DP=58;GPV=1;SPV=0.037081;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:26,5:11,4:15,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5403 chr9 101075382 . C A 0 PASS DP=82;GPV=1;SPV=2.7776e-06;SS=2;SSC=55;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:23,14:14,7:9,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5404 chr9 101477235 . A C 0 PASS DP=55;GPV=1;SPV=0.040965;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,5:16,4:9,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5405 chr9 101573773 . AT A 0 PASS DP=31;GPV=1;SPV=0.04735;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,7:4,4:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5406 chr9 101866531 . GTT G 0 PASS DP=33;GPV=1;SPV=0.042772;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,6:9,4:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5407 chr9 101900231 . C G 0 PASS DP=72;GPV=1;SPV=0.00011455;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:26,13:17,10:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5408 chr9 102220760 . C T 0 PASS DP=34;GPV=1;SPV=0.15275;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:9,3:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5409 chr9 102220778 . A G 0 PASS DP=34;GPV=1;SPV=0.15275;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:8,3:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5410 chr9 103532079 . CAAA C 0 PASS DP=29;GPV=1;SPV=0.014884;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:3,7:2,5:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5411 chr9 104575448 . G T 0 PASS DP=56;GPV=1;SPV=0.0019214;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:23,11:13,6:10,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5412 chr9 104633168 . CT C 0 PASS DP=18;GPV=1;SPV=0.045455;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:1,4:1,3:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5413 chr9 105162032 . C CA 0 PASS DP=41;GPV=1;SPV=0.015843;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,6:4,3:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5414 chr9 107242343 . G A 0 PASS DP=35;GPV=1;SPV=0.094203;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:10,4:8,3:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5415 chr9 107346304 . G GTC 0 PASS DP=41;GPV=1;SPV=0.0033467;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,8:8,6:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5416 chr9 107561912 . CTT C 0 PASS DP=34;GPV=1;SPV=0.10779;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,4:6,2:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5417 chr9 108247879 . C T 0 PASS DP=38;GPV=1;SPV=0.20253;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:15,1:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5418 chr9 108280182 . C T 0 PASS DP=60;GPV=1;SPV=0.0033714;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:26,10:16,7:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5419 chr9 108466081 . T C 0 PASS DP=44;GPV=1;SPV=0.093185;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:14,3:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5420 chr9 108867211 . A T 0 PASS DP=49;GPV=1;SPV=0.026941;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:22,6:16,5:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5421 chr9 109041453 . A ATT 0 PASS DP=30;GPV=1;SPV=0.091388;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,6:8,5:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5422 chr9 110058902 . T G 0 PASS DP=52;GPV=1;SPV=0.12491;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:30,5:16,3:14,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5423 chr9 110422900 . C T 0 PASS DP=29;GPV=1;SPV=0.0094953;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,8:3,7:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5424 chr9 110981784 . G C 0 PASS DP=57;GPV=1;SPV=0.013828;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:28,9:10,3:18,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5425 chr9 111210068 . G A 0 PASS DP=75;GPV=1;SPV=2.7821e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:26,15:12,6:14,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5426 chr9 111641635 . A G 0 PASS DP=40;GPV=1;SPV=0.046847;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:7,2:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5427 chr9 111907628 . C CTT 0 PASS DP=41;GPV=1;SPV=0.19154;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,4:13,3:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5428 chr9 111943556 . C CTTT 0 PASS DP=18;GPV=1;SPV=0.083333;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:2,5:0,3:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5429 chr9 112017294 . CA C 0 PASS DP=60;GPV=1;SPV=0.18741;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:36,4:24,3:12,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5430 chr9 112017298 . T C 0 PASS DP=36;GPV=1;SPV=0.05;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:25:0,3:0,2:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5431 chr9 112277931 . C T 0 PASS DP=45;GPV=1;SPV=0.01027;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,10:7,5:6,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5432 chr9 112340893 . TA T 0 PASS DP=65;GPV=1;SPV=0.20119;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:42,5:20,1:22,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5433 chr9 112784205 . C T 0 PASS DP=55;GPV=1;SPV=0.02651;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:27,7:11,4:16,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5434 chr9 112784207 . CCTAGGT C 0 PASS DP=53;GPV=1;SPV=0.1228;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:13,2:15,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5435 chr9 113062716 . A G 0 PASS DP=46;GPV=1;SPV=0.12395;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:26,5:16,1:10,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5436 chr9 115437923 . A AACACACACACAC 0 PASS DP=36;GPV=1;SPV=0.01726;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:11,12:5,8:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5437 chr9 115818885 . T A 0 PASS DP=57;GPV=1;SPV=0.056683;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:28,5:15,1:13,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5438 chr9 116816896 . A AAAATAAATAAATAAAT 0 PASS DP=42;GPV=1;SPV=0.0036482;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:6,9:3,4:3,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5439 chr9 116839857 . T TA 0 PASS DP=50;GPV=1;SPV=0.059705;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,4:5,1:16,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5440 chr9 116925869 . C A 0 PASS DP=64;GPV=1;SPV=0.051196;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:34,6:13,4:21,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5441 chr9 117997237 . T TTCCTCC 0 PASS DP=48;GPV=1;SPV=0.036744;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:21,7:9,5:12,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5442 chr9 118333571 . TGAC T 0 PASS DP=67;GPV=1;SPV=0.22942;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:29,4:17,1:12,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5443 chr9 118707387 . T TTCTCTTTCTTTCTTTGTTGCTTTC 0 PASS DP=39;GPV=1;SPV=0.065801;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,4:8,1:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5444 chr9 119021985 . T G 0 PASS DP=60;GPV=1;SPV=1.4732e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:18,16:5,10:13,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5445 chr9 120781679 . C T 0 PASS DP=61;GPV=1;SPV=0.035079;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:30,6:16,3:14,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5446 chr9 121493284 . G A 0 PASS DP=53;GPV=1;SPV=0.0002735;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:19,16:12,9:7,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5447 chr9 123248261 . G GT 0 PASS DP=31;GPV=1;SPV=0.034921;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,4:7,2:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5448 chr9 123917179 . G A 0 PASS DP=65;GPV=1;SPV=0.009659;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:28,7:15,3:13,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5449 chr9 124779546 . GT G 0 PASS DP=53;GPV=1;SPV=0.093588;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:16,1:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5450 chr9 124784943 . GTTTT G 0 PASS DP=32;GPV=1;SPV=0.17679;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,4:11,2:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5451 chr9 126626846 . C T 0 PASS DP=73;GPV=1;SPV=0.00014726;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:26,12:16,6:10,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5452 chr9 127552684 . G GTT 0 PASS DP=21;GPV=1;SPV=0.05418;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,4:3,3:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5453 chr9 128528003 . C CT 0 PASS DP=17;GPV=1;SPV=0.23077;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,2:1,1:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5454 chr9 129262777 . G T 0 PASS DP=60;GPV=1;SPV=2.6013e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,10:7,3:7,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5455 chr9 129442360 . C CA 0 PASS DP=35;GPV=1;SPV=0.001409;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:10,10:7,7:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5456 chr9 130310435 . C G 0 PASS DP=90;GPV=1;SPV=0.025523;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:44,6:22,3:22,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5457 chr9 130550336 . C CAAAA 0 PASS DP=33;GPV=1;SPV=0.020047;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,9:6,8:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5458 chr9 130603369 . C G 0 PASS DP=26;GPV=1;SPV=0.12981;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,5:5,3:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5459 chr9 130819853 . C CT 0 PASS DP=43;GPV=1;SPV=0.018157;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:16,13:8,6:8,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5460 chr9 131303479 . C T 0 PASS DP=51;GPV=1;SPV=0.0067406;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:21,8:14,4:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5461 chr9 131426337 . CAAAAA C 0 PASS DP=30;GPV=1;SPV=0.024887;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:4,7:2,6:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5462 chr9 132302681 . CAA C 0 PASS DP=23;GPV=1;SPV=0.13684;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:5,2:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5463 chr9 132313931 . T G 0 PASS DP=81;GPV=1;SPV=0.05832;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:23,6:9,3:14,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5464 chr9 132953176 . T G 0 PASS DP=63;GPV=1;SPV=0.052823;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:13,2:14,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5465 chr9 134093564 . A G 0 PASS DP=50;GPV=1;SPV=0.17768;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:12,3:17,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5466 chr9 134104174 . C T 0 PASS DP=18;GPV=1;SPV=0.011312;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,6:1,2:3,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5467 chr9 134527759 . C CAAAAAA 0 PASS DP=33;GPV=1;SPV=0.032805;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,10:5,9:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5468 chr9 134685055 . A AT 0 PASS DP=33;GPV=1;SPV=0.048943;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,3:5,2:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5469 chr9 134685504 . CCAT C 0 PASS DP=22;GPV=1;SPV=0.13684;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:3,1:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5470 chr9 135860597 . C CA 0 PASS DP=38;GPV=1;SPV=0.024017;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:8,11:6,8:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5471 chr9 136248222 . C T 0 PASS DP=83;GPV=1;SPV=0.00018501;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:35,15:18,10:17,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5472 chr9 136293425 . T TCACA 0 PASS DP=45;GPV=1;SPV=0.025685;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,9:9,6:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5473 chr9 136636348 . A G 0 PASS DP=50;GPV=1;SPV=6.7038e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,9:4,4:7,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5474 chr9 136960671 . C T 0 PASS DP=17;GPV=1;SPV=0.26471;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:7,2:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5475 chr9 137103150 . C A 0 PASS DP=55;GPV=1;SPV=0.031156;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:8,1:12,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5476 chr9 137780384 . C T 0 PASS DP=20;GPV=1;SPV=0.19298;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:9,3:5,1:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5477 chr9 138141015 . C G 0 PASS DP=100;GPV=1;SPV=0.0044922;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:62:45,17:26,13:19,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5478 chr9 138182033 . T C 0 PASS DP=81;GPV=1;SPV=0.048964;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:44,6:22,1:22,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5479 chrX 2932406 . G T 0 PASS DP=42;GPV=1;SPV=0.053471;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:9,1:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5480 chrX 3315355 . A G 0 PASS DP=27;GPV=1;SPV=0.13561;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:7,3:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5481 chrX 3615011 . A ATT 0 PASS DP=35;GPV=1;SPV=0.080632;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:12,8:8,7:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5482 chrX 3653858 . A T 0 PASS DP=47;GPV=1;SPV=0.027709;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:8,3:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5483 chrX 3681657 . A T 0 PASS DP=32;GPV=1;SPV=0.13473;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:9,1:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5484 chrX 3830389 . C T 0 PASS DP=24;GPV=1;SPV=0.047431;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:3,1:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5485 chrX 4067356 . CTTTCT C 0 PASS DP=24;GPV=1;SPV=0.067669;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,4:2,1:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5486 chrX 4207330 . G A 0 PASS DP=42;GPV=1;SPV=0.063158;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:6,3:3,2:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5487 chrX 4465393 . AAAAG A 0 PASS DP=24;GPV=1;SPV=0.0067873;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:3,8:2,5:1,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5488 chrX 4852269 . TA T 0 PASS DP=47;GPV=1;SPV=0.02027;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,7:10,2:6,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5489 chrX 5011194 . T TTTTCTTTCTTTCTTTCTTTC 0 PASS DP=36;GPV=1;SPV=0.20553;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,4:4,1:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5490 chrX 5941180 . G T 0 PASS DP=29;GPV=1;SPV=0.11538;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:6,6:5,2:1,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5491 chrX 6082951 . TTTTTC T 0 PASS DP=40;GPV=1;SPV=0.080042;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:10,1:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5492 chrX 8511868 . C CA 0 PASS DP=38;GPV=1;SPV=0.069853;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,5:10,4:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5493 chrX 9089555 . G GGA 0 PASS DP=38;GPV=1;SPV=0.045217;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:10,6:4,3:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5494 chrX 9523960 . CT C 0 PASS DP=25;GPV=1;SPV=0.14387;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:6,1:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5495 chrX 9883121 . A T 0 PASS DP=53;GPV=1;SPV=0.020485;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:26,8:16,6:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5496 chrX 10565003 . A T 0 PASS DP=59;GPV=1;SPV=0.097902;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:4,4:1,1:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5497 chrX 12776962 . G C 0 PASS DP=84;GPV=1;SPV=3.4552e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:31,15:20,9:11,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5498 chrX 13610765 . C T 0 PASS DP=74;GPV=1;SPV=0.0010241;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:31,11:10,7:21,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5499 chrX 14861346 . G A 0 PASS DP=74;GPV=1;SPV=1.7807e-06;SS=2;SSC=57;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:20,15:11,7:9,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5500 chrX 15180071 . T TACACACACACAC 0 PASS DP=45;GPV=1;SPV=0.020164;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,10:9,5:5,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5501 chrX 15268331 . C CA 0 PASS DP=49;GPV=1;SPV=0.3882;SS=2;SSC=4;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:8,3:27,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5502 chrX 15776338 . C CA 0 PASS DP=39;GPV=1;SPV=0.023323;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:14,11:13,9:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5503 chrX 19106661 . G C 0 PASS DP=65;GPV=1;SPV=2.6849e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:21,15:13,5:8,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5504 chrX 19522002 . T G 0 PASS DP=30;GPV=1;SPV=0.0401;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,8:3,5:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5505 chrX 19774648 . C CA 0 PASS DP=45;GPV=1;SPV=0.16591;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:24,4:16,1:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5506 chrX 19838902 . A G 0 PASS DP=45;GPV=1;SPV=0.0050177;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:10,2:7,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5507 chrX 21950433 . CTTT C 0 PASS DP=44;GPV=1;SPV=0.034961;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:18,13:14,6:4,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5508 chrX 24047682 . G A 0 PASS DP=77;GPV=1;SPV=2.7628e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:26,14:11,3:15,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5509 chrX 24452724 . GGAGGGAGATGCCAGAGTCTTTTTCACAAC G 0 PASS DP=58;GPV=1;SPV=0.048897;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:24,10:9,3:15,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5510 chrX 25610112 . C A 0 PASS DP=61;GPV=1;SPV=0.0014541;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:24,10:5,3:19,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5511 chrX 26320078 . CG C 0 PASS DP=33;GPV=1;SPV=0.01236;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,10:11,4:2,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5512 chrX 26320081 . G GAT 0 PASS DP=33;GPV=1;SPV=0.0069862;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,10:10,4:2,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5513 chrX 26919912 . T TTATATA 0 PASS DP=23;GPV=1;SPV=0.024887;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:3,8:1,6:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5514 chrX 29837300 . T C 0 PASS DP=30;GPV=1;SPV=0.017591;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,7:4,4:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5515 chrX 30223696 . G T 0 PASS DP=67;GPV=1;SPV=0.00046753;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:25,11:14,9:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5516 chrX 30553137 . G A 0 PASS DP=70;GPV=1;SPV=0.0019129;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:28,9:8,4:20,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5517 chrX 30553139 . G A 0 PASS DP=73;GPV=1;SPV=0.016217;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:32,6:11,2:21,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5518 chrX 30713440 . C A 0 PASS DP=64;GPV=1;SPV=0.00017018;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,9:12,3:6,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5519 chrX 31022361 . C A 0 PASS DP=63;GPV=1;SPV=0.0029833;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:26,9:15,4:11,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5520 chrX 31226184 . C T 0 PASS DP=73;GPV=1;SPV=8.8502e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:25,19:11,10:14,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5521 chrX 31370098 . C CA 0 PASS DP=31;GPV=1;SPV=0.00096843;SS=2;SSC=30;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:4,11:2,9:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5522 chrX 31716551 . C CAACAAAACAA 0 PASS DP=55;GPV=1;SPV=0.00059181;SS=2;SSC=32;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:16,12:8,7:8,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5523 chrX 32252877 . AAAATATATAT A 0 PASS DP=29;GPV=1;SPV=0.027415;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:6,7:4,4:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5524 chrX 32922208 . A G 0 PASS DP=77;GPV=1;SPV=0.00012796;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:26,11:6,6:20,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5525 chrX 33026313 . CAAAAA C 0 PASS DP=29;GPV=1;SPV=0.027053;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,6:5,5:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5526 chrX 33095964 . AT A 0 PASS DP=27;GPV=1;SPV=0.037732;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:8,7:6,3:2,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5527 chrX 33106053 . AC A 0 PASS DP=74;GPV=1;SPV=0.1099;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:46,6:25,4:21,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5528 chrX 33130739 . C T 0 PASS DP=74;GPV=1;SPV=0.0011799;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:30,10:13,4:17,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5529 chrX 33428810 . A AAT 0 PASS DP=68;GPV=1;SPV=0.0020896;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:22,15:8,5:14,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5530 chrX 33921674 . G A 0 PASS DP=61;GPV=1;SPV=0.0040088;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:28,11:16,8:12,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5531 chrX 34144127 . C T 0 PASS DP=27;GPV=1;SPV=0.028986;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,6:2,4:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5532 chrX 34400870 . G GA 0 PASS DP=47;GPV=1;SPV=0.012303;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:17,12:11,8:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5533 chrX 35521982 . TATAG T 0 PASS DP=59;GPV=1;SPV=0.00044065;SS=2;SSC=33;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:16,15:8,9:8,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5534 chrX 36560921 . TTTCC T 0 PASS DP=47;GPV=1;SPV=0.011224;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:10,8:6,1:4,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5535 chrX 36584400 . T C 0 PASS DP=28;GPV=1;SPV=0.17128;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,4:6,1:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5536 chrX 36591613 . T C 0 PASS DP=83;GPV=1;SPV=4.361e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:32,16:24,11:8,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5537 chrX 36965370 . G C 0 PASS DP=71;GPV=1;SPV=0.0016717;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:31,11:16,7:15,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5538 chrX 40088412 . G C 0 PASS DP=68;GPV=1;SPV=7.1254e-07;SS=2;SSC=61;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:18,18:6,12:12,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5539 chrX 41792237 . A C 0 PASS DP=58;GPV=1;SPV=0.014208;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:26,7:9,4:17,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5540 chrX 42959423 . CTT C 0 PASS DP=26;GPV=1;SPV=0.026636;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,6:6,5:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5541 chrX 43307955 . T C 0 PASS DP=39;GPV=1;SPV=0.10147;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:22,7:15,3:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5542 chrX 43423737 . AC A 0 PASS DP=42;GPV=1;SPV=0.012445;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,10:5,8:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5543 chrX 45334779 . AAATAT A 0 PASS DP=27;GPV=1;SPV=0.13561;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:7,2:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5544 chrX 45334812 . AAATAT A 0 PASS DP=32;GPV=1;SPV=0.042772;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,6:7,3:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5545 chrX 46395714 . C T 0 PASS DP=16;GPV=1;SPV=0.038462;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:4,1:0,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5546 chrX 46827562 . G A 0 PASS DP=34;GPV=1;SPV=0.11947;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,4:4,3:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5547 chrX 47358091 . CA C 0 PASS DP=36;GPV=1;SPV=0.10365;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,5:9,4:9,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5548 chrX 50563508 . T G 0 PASS DP=43;GPV=1;SPV=0.013669;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:7,2:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5549 chrX 52009631 . A G 0 PASS DP=68;GPV=1;SPV=0.0010644;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:25,9:13,3:12,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5550 chrX 52424863 . A G 0 PASS DP=56;GPV=1;SPV=0.0036826;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:24,10:11,7:13,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5551 chrX 53012726 . A C 0 PASS DP=72;GPV=1;SPV=8.9762e-07;SS=2;SSC=60;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:18,15:12,7:6,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5552 chrX 54708493 . G C 0 PASS DP=70;GPV=1;SPV=0.0014601;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:30,11:19,9:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5553 chrX 55573678 . A T 0 PASS DP=69;GPV=1;SPV=0.00030714;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:26,12:12,8:14,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5554 chrX 55864281 . TA T 0 PASS DP=35;GPV=1;SPV=0.024887;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:4,8:3,7:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5555 chrX 60212167 . T C 0 PASS DP=36;GPV=1;SPV=0.15033;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:19,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5556 chrX 63743217 . C CA 0 PASS DP=75;GPV=1;SPV=0.060731;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:34,4:20,1:14,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5557 chrX 66337731 . T C 0 PASS DP=35;GPV=1;SPV=0.16912;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:12,3:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5558 chrX 66589078 . TTG T 0 PASS DP=33;GPV=1;SPV=0.14178;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:11,1:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5559 chrX 68317559 . GAA G 0 PASS DP=35;GPV=1;SPV=0.062683;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,5:13,2:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5560 chrX 68383654 . G A 0 PASS DP=40;GPV=1;SPV=0.0013497;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,10:4,4:9,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5561 chrX 68452429 . ATG A 0 PASS DP=23;GPV=1;SPV=0.15415;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:1,3:10,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5562 chrX 68661970 . CTCTTTCTT C 0 PASS DP=40;GPV=1;SPV=0.041254;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,6:1,1:17,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5563 chrX 70273422 . A C 0 PASS DP=65;GPV=1;SPV=0.0016408;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:25,9:11,5:14,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5564 chrX 70296083 . C CTT 0 PASS DP=31;GPV=1;SPV=0.036419;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:7,3:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5565 chrX 70349661 . T C 0 PASS DP=23;GPV=1;SPV=0.15584;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:7,2:2,1:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5566 chrX 70561388 . C CT 0 PASS DP=28;GPV=1;SPV=0.0063768;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,8:4,7:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5567 chrX 72440800 . A C 0 PASS DP=87;GPV=1;SPV=9.7732e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:28,14:14,8:14,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5568 chrX 75553778 . TACAC T 0 PASS DP=53;GPV=1;SPV=0.038251;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:21,11:11,6:10,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5569 chrX 77618075 . A G 0 PASS DP=56;GPV=1;SPV=0.0014944;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:23,12:11,6:12,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5570 chrX 77807724 . T TTC 0 PASS DP=71;GPV=1;SPV=0.042571;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:28,9:9,2:19,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5571 chrX 77807744 . C T 0 PASS DP=61;GPV=1;SPV=0.028918;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:27,9:7,2:20,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5572 chrX 78589925 . T C 0 PASS DP=71;GPV=1;SPV=0.00011173;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:23,11:7,6:16,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5573 chrX 78965833 . CCTTTCTTT C 0 PASS DP=31;GPV=1;SPV=0.11424;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,6:0,3:15,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5574 chrX 79317858 . T G 0 PASS DP=58;GPV=1;SPV=0.0040149;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:21,11:9,3:12,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5575 chrX 79550326 . C A 0 PASS DP=28;GPV=1;SPV=0.0051869;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:8,9:8,6:0,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5576 chrX 80725789 . G A 0 PASS DP=69;GPV=1;SPV=0.085385;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:34,4:18,2:16,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5577 chrX 80956878 . T G 0 PASS DP=53;GPV=1;SPV=1.6051e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:15,18:7,10:8,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5578 chrX 85015542 . A ATATT 0 PASS DP=45;GPV=1;SPV=0.041575;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,6:9,4:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5579 chrX 85658013 . T G 0 PASS DP=66;GPV=1;SPV=9.3681e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:24,15:11,9:13,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5580 chrX 86703721 . G A 0 PASS DP=62;GPV=1;SPV=0.0031109;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:24,8:12,5:12,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5581 chrX 87107173 . T C 0 PASS DP=43;GPV=1;SPV=0.1025;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:12,1:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5582 chrX 87376789 . C G 0 PASS DP=75;GPV=1;SPV=0.0027236;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:35,11:15,5:20,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5583 chrX 87717069 . T C 0 PASS DP=18;GPV=1;SPV=0.23529;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:5,1:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5584 chrX 88212494 . T A 0 PASS DP=38;GPV=1;SPV=0.11996;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:13,2:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5585 chrX 88416330 . A T 0 PASS DP=31;GPV=1;SPV=0.21465;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,5:8,2:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5586 chrX 88976499 . C T 0 PASS DP=16;GPV=1;SPV=0.038462;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:2,1:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5587 chrX 89146034 . C G 0 PASS DP=69;GPV=1;SPV=8.9875e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:19,13:11,10:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5588 chrX 91344255 . AAACAAAAACAAAAAACAAAC A 0 PASS DP=29;GPV=1;SPV=0.0019452;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,6:5,5:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5589 chrX 91710799 . G A 0 PASS DP=52;GPV=1;SPV=0.0005553;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,9:6,3:10,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5590 chrX 91984178 . G A 0 PASS DP=36;GPV=1;SPV=0.10638;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:20,7:11,1:9,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5591 chrX 92565528 . T C 0 PASS DP=28;GPV=1;SPV=0.0078215;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,8:6,1:3,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5592 chrX 92674911 . G GTATA 0 PASS DP=31;GPV=1;SPV=0.12884;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,4:10,3:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5593 chrX 92837460 . GGAAGGAAGGAATACTTCTAAACTCATTATAATGGGTCA G 0 PASS DP=62;GPV=1;SPV=0.006961;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:27,8:12,4:15,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5594 chrX 92992409 . C A 0 PASS DP=41;GPV=1;SPV=0.092279;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:20,5:10,3:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5595 chrX 93493539 . C T 0 PASS DP=75;GPV=1;SPV=2.9482e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:28,18:12,11:16,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5596 chrX 96829462 . A T 0 PASS DP=56;GPV=1;SPV=0.29013;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:22,5:11,4:11,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5597 chrX 97295734 . C CT 0 PASS DP=48;GPV=1;SPV=0.032462;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:20,10:15,6:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5598 chrX 97583100 . T A 0 PASS DP=63;GPV=1;SPV=0.00097567;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:25,11:13,5:12,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5599 chrX 98058757 . C G 0 PASS DP=79;GPV=1;SPV=0.0043057;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:36,9:19,3:17,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5600 chrX 98438684 . AT A 0 PASS DP=61;GPV=1;SPV=0.0034815;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:29,14:12,8:17,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5601 chrX 98675715 . A T 0 PASS DP=63;GPV=1;SPV=0.040631;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:32,6:20,2:12,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5602 chrX 98758324 . T TATATATATAC 0 PASS DP=29;GPV=1;SPV=0.27273;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:4,2:2,1:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5603 chrX 99387850 . C CA 0 PASS DP=32;GPV=1;SPV=0.13077;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,5:8,4:9,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5604 chrX 99938667 . GCCC G 0 PASS DP=62;GPV=1;SPV=0.073354;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:17,3:12,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5605 chrX 99938672 . GGGCGGC G 0 PASS DP=65;GPV=1;SPV=0.087004;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:17,3:15,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5606 chrX 99938684 . CAAAGGCTGGG C 0 PASS DP=64;GPV=1;SPV=0.07299;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:16,3:14,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5607 chrX 101158272 . CT C 0 PASS DP=37;GPV=1;SPV=0.16205;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:22,6:13,5:9,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5608 chrX 101243201 . C T 0 PASS DP=60;GPV=1;SPV=0.0046201;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:27,10:17,7:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5609 chrX 101253540 . CTTTT C 0 PASS DP=20;GPV=1;SPV=0.016254;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,5:3,3:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5610 chrX 102251392 . A G 0 PASS DP=23;GPV=1;SPV=0.15415;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:3,3:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5611 chrX 102499739 . A T 0 PASS DP=74;GPV=1;SPV=0.0014749;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:29,9:18,2:11,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5612 chrX 102824103 . C CTT 0 PASS DP=23;GPV=1;SPV=0.040248;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,6:5,2:3,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5613 chrX 102824504 . T A 0 PASS DP=58;GPV=1;SPV=0.0002515;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,10:10,4:8,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5614 chrX 103004914 . T G 0 PASS DP=57;GPV=1;SPV=0.085139;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:7,8:2,4:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5615 chrX 104225608 . A C 0 PASS DP=28;GPV=1;SPV=0.017544;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:7,11:6,8:1,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5616 chrX 104325992 . C T 0 PASS DP=47;GPV=1;SPV=0.00096868;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:12,24:9,13:3,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5617 chrX 105439451 . T C 0 PASS DP=59;GPV=1;SPV=0.00023472;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:22,15:12,9:10,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5618 chrX 105735028 . A G 0 PASS DP=67;GPV=1;SPV=0.0020462;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:31,13:14,5:17,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5619 chrX 106693399 . C CAGAG 0 PASS DP=40;GPV=1;SPV=0.048755;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,6:9,4:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5620 chrX 107275037 . A ATTT 0 PASS DP=51;GPV=1;SPV=0.002235;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:21,12:15,8:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5621 chrX 108309801 . AACAC A 0 PASS DP=33;GPV=1;SPV=0.072836;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,7:10,5:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5622 chrX 108526671 . CTCTT C 0 PASS DP=35;GPV=1;SPV=0.097744;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:9,9:0,4:9,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5623 chrX 109594739 . C CA 0 PASS DP=48;GPV=1;SPV=0.0040948;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:19,11:15,9:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5624 chrX 110105721 . G C 0 PASS DP=24;GPV=1;SPV=0.12846;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:8,3:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5625 chrX 110689851 . CTA C 0 PASS DP=61;GPV=1;SPV=0.14864;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:26,6:15,2:11,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5626 chrX 111404048 . T TTAAAATAAAATAAAA 0 PASS DP=56;GPV=1;SPV=0.0066813;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:18,12:6,8:12,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5627 chrX 112226663 . G A 0 PASS DP=47;GPV=1;SPV=0.017517;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:19,12:11,2:8,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5628 chrX 112350000 . T C 0 PASS DP=63;GPV=1;SPV=0.0027255;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:27,10:13,8:14,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5629 chrX 113024426 . GGTAT G 0 PASS DP=39;GPV=1;SPV=0.029963;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,10:11,7:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5630 chrX 113024490 . TAC T 0 PASS DP=32;GPV=1;SPV=0.018485;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:10,11:7,5:3,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5631 chrX 113836256 . G GGTGT 0 PASS DP=38;GPV=1;SPV=0.017445;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,6:5,5:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5632 chrX 115261952 . A C 0 PASS DP=42;GPV=1;SPV=0.3;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:7,2:4,1:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5633 chrX 116797951 . A G 0 PASS DP=64;GPV=1;SPV=0.00020206;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:24,14:15,6:9,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5634 chrX 117792863 . A T 0 PASS DP=71;GPV=1;SPV=0.03876;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:20,5:12,2:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5635 chrX 117863303 . TA T 0 PASS DP=29;GPV=1;SPV=0.017609;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,10:0,4:11,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5636 chrX 117879355 . C G 0 PASS DP=67;GPV=1;SPV=0.00069448;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:28,13:13,6:15,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5637 chrX 118378790 . T C 0 PASS DP=41;GPV=1;SPV=0.10564;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:23,6:9,5:14,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5638 chrX 118692381 . G T 0 PASS DP=55;GPV=1;SPV=0.00011959;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:13,22:5,6:8,16
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5639 chrX 118952590 . T C 0 PASS DP=65;GPV=1;SPV=0.0027508;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:25,8:14,4:11,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5640 chrX 119152815 . ATATCACCTG A 0 PASS DP=52;GPV=1;SPV=0.00057277;SS=2;SSC=32;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:18,11:12,6:6,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5641 chrX 119455681 . C CTT 0 PASS DP=26;GPV=1;SPV=0.024256;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:7,10:6,7:1,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5642 chrX 119621446 . G GGTGTGTGTGTGTGTGTGTGT 0 PASS DP=31;GPV=1;SPV=0.3064;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,4:8,3:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5643 chrX 120581950 . A G 0 PASS DP=38;GPV=1;SPV=0.052464;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,5:12,1:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5644 chrX 120582031 . AG A 0 PASS DP=40;GPV=1;SPV=0.040008;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,9:13,6:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5645 chrX 120587999 . C A 0 PASS DP=37;GPV=1;SPV=0.13684;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:10,4:5,3:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5646 chrX 121383661 . ATAAAATAAAATAAAATAAAAT A 0 PASS DP=58;GPV=1;SPV=0.0087027;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:24,9:16,7:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5647 chrX 122148500 . T TTTTTGTTTTGTTTTG 0 PASS DP=51;GPV=1;SPV=0.034367;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:7,4:15,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5648 chrX 122466001 . T C 0 PASS DP=38;GPV=1;SPV=0.091143;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,6:7,3:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5649 chrX 122466025 . A AAT 0 PASS DP=40;GPV=1;SPV=0.13168;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:19,6:7,3:12,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5650 chrX 123698457 . C CA 0 PASS DP=38;GPV=1;SPV=0.082337;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,6:8,4:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5651 chrX 123889997 . ATTTTTTTTT A 0 PASS DP=29;GPV=1;SPV=0.056522;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,5:7,2:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5652 chrX 123891823 . T TA 0 PASS DP=58;GPV=1;SPV=0.00044917;SS=2;SSC=33;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:23,17:9,11:14,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5653 chrX 123912216 . G GAAA 0 PASS DP=36;GPV=1;SPV=0.0078247;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:7,9:6,8:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5654 chrX 123921883 . AT A 0 PASS DP=42;GPV=1;SPV=0.075461;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:23,7:10,1:13,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5655 chrX 123922946 . CA C 0 PASS DP=25;GPV=1;SPV=0.14387;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:9,3:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5656 chrX 123939501 . A AACAC 0 PASS DP=41;GPV=1;SPV=0.02457;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:16,12:6,3:10,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5657 chrX 124218308 . T TACACACAC 0 PASS DP=36;GPV=1;SPV=0.045151;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,7:9,4:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5658 chrX 124437104 . ATT A 0 PASS DP=29;GPV=1;SPV=0.079329;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,6:7,4:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5659 chrX 125117010 . C CA 0 PASS DP=33;GPV=1;SPV=0.020124;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:7,7:4,6:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5660 chrX 125163070 . C T 0 PASS DP=52;GPV=1;SPV=0.010975;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:18,13:5,7:13,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5661 chrX 126673196 . T C 0 PASS DP=36;GPV=1;SPV=0.041461;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,7:10,5:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5662 chrX 127366593 . C T 0 PASS DP=34;GPV=1;SPV=0.12093;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:12,4:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5663 chrX 127505221 . ATAT A 0 PASS DP=35;GPV=1;SPV=0.0015096;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:8,15:6,8:2,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5664 chrX 127749606 . CAT C 0 PASS DP=60;GPV=1;SPV=0.087068;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:32,5:16,3:16,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5665 chrX 127821614 . CTT C 0 PASS DP=45;GPV=1;SPV=0.0038232;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:15,15:6,10:9,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5666 chrX 127891640 . C T 0 PASS DP=57;GPV=1;SPV=0.0014939;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:22,10:10,6:12,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5667 chrX 128491078 . G A 0 PASS DP=71;GPV=1;SPV=0.00039908;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:26,27:12,15:14,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5668 chrX 128528655 . AACACAC A 0 PASS DP=32;GPV=1;SPV=0.098383;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:9,7:5,6:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5669 chrX 128691631 . C A 0 PASS DP=61;GPV=1;SPV=0.029233;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:29,6:13,2:16,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5670 chrX 128979419 . GTGTATATATATGTATATA G 0 PASS DP=49;GPV=1;SPV=0.037012;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:19,7:8,2:11,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5671 chrX 129720126 . TCTCCA T 0 PASS DP=56;GPV=1;SPV=0.00049102;SS=2;SSC=33;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:21,13:6,7:15,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5672 chrX 131194910 . C A 0 PASS DP=66;GPV=1;SPV=0.0022407;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:28,10:9,6:19,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5673 chrX 131293722 . C CTGTGTGTGTGTG 0 PASS DP=32;GPV=1;SPV=0.11947;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,4:7,2:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5674 chrX 131445399 . C CTCTT 0 PASS DP=32;GPV=1;SPV=0.11624;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,4:1,1:12,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5675 chrX 132571464 . TATAC T 0 PASS DP=20;GPV=1;SPV=0.16667;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:3,4:1,1:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5676 chrX 133496454 . G A 0 PASS DP=52;GPV=1;SPV=0.11419;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:31,6:14,1:17,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5677 chrX 133498998 . CTT C 0 PASS DP=38;GPV=1;SPV=0.01391;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:4,2:7,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5678 chrX 135123439 . T C 0 PASS DP=51;GPV=1;SPV=0.01932;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:18,11:11,3:7,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5679 chrX 135124763 . G A 0 PASS DP=46;GPV=1;SPV=0.032;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,7:9,1:8,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5680 chrX 135824830 . G A 0 PASS DP=50;GPV=1;SPV=0.046334;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:25,6:18,5:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5681 chrX 135867898 . T G 0 PASS DP=31;GPV=1;SPV=0.057842;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:0,0:12,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5682 chrX 136109942 . AAG A 0 PASS DP=43;GPV=1;SPV=0.24484;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:17,1:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5683 chrX 136473073 . GAGGGAGGAATGAAGGGAAGAA G 0 PASS DP=37;GPV=1;SPV=0.0052134;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:14,12:7,9:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5684 chrX 136600800 . T C 0 PASS DP=40;GPV=1;SPV=0.018564;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,7:9,5:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5685 chrX 136644723 . T TCAAA 0 PASS DP=62;GPV=1;SPV=0.0062408;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:26,17:8,7:18,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5686 chrX 136939150 . G C 0 PASS DP=23;GPV=1;SPV=0.44608;SS=2;SSC=3;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,3:9,2:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5687 chrX 136958091 . T C 0 PASS DP=74;GPV=1;SPV=0.0078314;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:34,8:15,4:19,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5688 chrX 137557538 . AAAAT A 0 PASS DP=58;GPV=1;SPV=0.084757;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:16,1:12,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5689 chrX 138017063 . C CA 0 PASS DP=41;GPV=1;SPV=0.057896;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,6:14,4:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5690 chrX 139304610 . T G 0 PASS DP=76;GPV=1;SPV=0.00040366;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:29,11:19,5:10,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5691 chrX 139503279 . CGT C 0 PASS DP=19;GPV=1;SPV=0.014884;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:3,8:2,7:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5692 chrX 140188892 . C G 0 PASS DP=52;GPV=1;SPV=0.038272;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:29,11:16,7:13,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5693 chrX 140215938 . C T 0 PASS DP=54;GPV=1;SPV=0.049315;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:25,9:14,4:11,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5694 chrX 140723391 . T TAC 0 PASS DP=44;GPV=1;SPV=0.065833;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:21,6:8,2:13,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5695 chrX 141095375 . G A 0 PASS DP=29;GPV=1;SPV=0.029349;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:10,4:2,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5696 chrX 141111829 . C T 0 PASS DP=43;GPV=1;SPV=0.22206;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:18,3:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5697 chrX 141349308 . G C 0 PASS DP=73;GPV=1;SPV=0.0028525;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:34,11:11,7:23,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5698 chrX 141508038 . A G 0 PASS DP=34;GPV=1;SPV=0.065982;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:5,1:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5699 chrX 141544104 . GAA G 0 PASS DP=42;GPV=1;SPV=0.19974;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:26,5:18,2:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5700 chrX 141759742 . TAC T 0 PASS DP=51;GPV=1;SPV=0.05062;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:13,1:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5701 chrX 141791198 . GT G 0 PASS DP=45;GPV=1;SPV=0.18393;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:13,2:13,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5702 chrX 142171661 . A G 0 PASS DP=50;GPV=1;SPV=0.011608;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:6,4:11,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5703 chrX 142340513 . C G 0 PASS DP=53;GPV=1;SPV=0.00067301;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,10:10,6:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5704 chrX 142569120 . TTTTCTTTC T 0 PASS DP=47;GPV=1;SPV=0.15365;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:8,1:18,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5705 chrX 143206799 . T C 0 PASS DP=61;GPV=1;SPV=2.0941e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:18,14:10,7:8,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5706 chrX 143865197 . ATG A 0 PASS DP=39;GPV=1;SPV=0.033948;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:7,9:3,6:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5707 chrX 144103798 . T C 0 PASS DP=44;GPV=1;SPV=0.00068862;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:9,12:4,5:5,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5708 chrX 144103820 . CTTT C 0 PASS DP=33;GPV=1;SPV=4.7337e-05;SS=2;SSC=43;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:17:4,13:2,9:2,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5709 chrX 144202168 . T TTTCCTTCC 0 PASS DP=49;GPV=1;SPV=0.042336;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:8,2:14,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5710 chrX 144475856 . T TAA 0 PASS DP=55;GPV=1;SPV=0.16556;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:18,2:13,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5711 chrX 144724939 . T A 0 PASS DP=62;GPV=1;SPV=0.0012196;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:24,10:11,9:13,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5712 chrX 144800095 . A G 0 PASS DP=49;GPV=1;SPV=0.10447;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:16,4:10,3:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5713 chrX 145000425 . C CT 0 PASS DP=36;GPV=1;SPV=0.0031702;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:9,11:3,7:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5714 chrX 145435578 . CCACGG C 0 PASS DP=60;GPV=1;SPV=0.045968;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:16,6:8,4:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5715 chrX 145728671 . G T 0 PASS DP=55;GPV=1;SPV=0.00018161;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,10:9,4:7,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5716 chrX 145841803 . G A 0 PASS DP=40;GPV=1;SPV=0.18176;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,4:16,2:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5717 chrX 146042763 . C A 0 PASS DP=39;GPV=1;SPV=0.0012285;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:4,3:7,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5718 chrX 146042841 . T A 0 PASS DP=43;GPV=1;SPV=0.0016748;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:9,9:5,4:4,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5719 chrX 146088948 . T TTCTTTTC 0 PASS DP=51;GPV=1;SPV=0.046124;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:20,13:14,5:6,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5720 chrX 147025443 . T TAAA 0 PASS DP=44;GPV=1;SPV=0.16089;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:20,4:13,1:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5721 chrX 147111915 . C CACACACACACACACACACAA 0 PASS DP=42;GPV=1;SPV=0.084679;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:19,5:8,2:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5722 chrX 147226789 . A G 0 PASS DP=28;GPV=1;SPV=0.22807;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,4:4,1:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5723 chrX 147509349 . A AAT 0 PASS DP=35;GPV=1;SPV=0.038747;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:13,12:7,6:6,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5724 chrX 147756133 . C CCA 0 PASS DP=48;GPV=1;SPV=0.019523;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:20,14:12,8:8,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5725 chrX 149272569 . C CAA 0 PASS DP=33;GPV=1;SPV=0.030046;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:7,4:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5726 chrX 149935818 . T C 0 PASS DP=57;GPV=1;SPV=0.019281;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:12,3:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5727 chrX 150132345 . C T 0 PASS DP=42;GPV=1;SPV=0.2122;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:17,1:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5728 chrX 150385277 . T TACAC 0 PASS DP=46;GPV=1;SPV=0.010569;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:12,12:7,9:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5729 chrX 151092238 . C T 0 PASS DP=52;GPV=1;SPV=0.036166;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:25,6:14,3:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5730 chrX 152182721 . G T 0 PASS DP=21;GPV=1;SPV=0.034965;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:13:2,7:2,4:0,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5731 chrX 152239978 . A C 0 PASS DP=39;GPV=1;SPV=0.28876;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:16,3:9,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5732 chrX 153598416 . GA G 0 PASS DP=56;GPV=1;SPV=0.0024779;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:18,17:11,10:7,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5733 chrX 153621258 . GA G 0 PASS DP=39;GPV=1;SPV=0.042555;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,8:6,7:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5734 chrX 154104672 . CAG C 0 PASS DP=57;GPV=1;SPV=0.11141;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:17,3:12,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5735 chrX 154106779 . C CA 0 PASS DP=43;GPV=1;SPV=0.018564;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,7:9,6:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5736 chrX 154240626 . C CTT 0 PASS DP=26;GPV=1;SPV=0.14387;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,4:0,0:12,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5737 chrX 154519083 . C CT 0 PASS DP=25;GPV=1;SPV=0.037681;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:7,10:4,8:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5738 chrY 11147442 . A G 0 PASS DP=32;GPV=1;SPV=0.038324;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:3,3:8,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5739 chrY 11163520 . G T 0 PASS DP=70;GPV=1;SPV=0.031533;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:26,6:15,4:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5740 chrY 11180965 . A G 0 PASS DP=112;GPV=1;SPV=0.020926;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:60:54,6:49,5:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5741 chrY 11189765 . T C 0 PASS DP=106;GPV=1;SPV=0.031957;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:66:59,7:9,1:50,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5742 chrY 11203502 . G A 0 PASS DP=82;GPV=1;SPV=0.039802;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:39,5:18,1:21,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5743 chrY 11203520 . G C 0 PASS DP=72;GPV=1;SPV=0.020882;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:33,6:16,1:17,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5744 chrY 11206834 . C CAA 0 PASS DP=151;GPV=1;SPV=0.042084;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:83:63,10:32,4:31,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5745 chrY 11260010 . A G 0 PASS DP=334;GPV=1;SPV=0.030837;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:196:166,30:91,13:75,17
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5746 chrY 11284353 . T C 0 PASS DP=423;GPV=1;SPV=0.048153;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:233:193,36:60,21:133,15
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5747 chrY 11409692 . G C 0 PASS DP=90;GPV=1;SPV=0.0054071;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:35,16:5,5:30,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5748 chrY 56828952 . G T 0 PASS DP=142;GPV=1;SPV=0.039467;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:79:69,10:33,4:36,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5749 chrY 56835443 . G T 0 PASS DP=181;GPV=1;SPV=0.018332;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:108:90,18:44,12:46,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5750 chrY 56886746 . A G 0 PASS DP=238;GPV=1;SPV=0.0035615;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:137:114,23:57,9:57,14