Mercurial > repos > artbio > mutational_patterns

comparison test-data/sigmatrix.tab @ 25:b00fef2b1c2c draft

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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit eeb46055822c6805c209af0c450ae941100960bd
author artbio
date Wed, 06 Jul 2022 11:43:09 +0000
parents ca6c19ee7da0
children
comparison
equal deleted inserted replaced
24:ca6c19ee7da0 25:b00fef2b1c2c
1 Type SBSA SBSB SBS5-like SBSC 1 Type SBS5-like SBSA
2 A[C>A]A 2.537216e-02 2.002096e-02 1.710480e-02 2.141184e-02 2 A[C>A]A 2.124308e-02 2.022610e-02
3 A[C>A]C 9.450873e-03 1.458332e-02 1.433290e-02 8.146530e-15 3 A[C>A]C 1.152124e-02 9.471896e-03
4 A[C>A]G 2.154737e-06 2.245761e-03 7.951470e-03 3.165761e-03 4 A[C>A]G 3.820981e-03 2.804656e-03
5 A[C>A]T 1.157395e-02 5.815074e-03 1.240409e-02 4.643111e-03 5 A[C>A]T 1.134424e-02 5.362864e-03
6 C[C>A]A 1.088500e-02 1.062103e-02 1.055922e-02 6.408859e-03 6 C[C>A]A 1.054951e-02 9.070399e-03
7 C[C>A]C 9.642499e-03 8.802069e-03 1.580375e-02 2.817272e-03 7 C[C>A]C 1.202944e-02 6.837280e-03
8 C[C>A]G 3.260193e-03 3.291545e-03 2.316976e-03 1.206510e-03 8 C[C>A]G 2.762178e-03 2.501478e-03
9 C[C>A]T 1.342709e-02 1.891337e-03 7.936790e-03 7.279236e-03 9 C[C>A]T 1.015697e-02 3.518667e-03
10 G[C>A]A 1.008899e-02 1.222901e-02 3.142566e-09 9.140614e-03 10 G[C>A]A 5.519337e-03 1.100345e-02
11 G[C>A]C 6.174019e-03 4.836613e-03 9.098106e-03 4.149261e-03 11 G[C>A]C 7.306249e-03 4.676835e-03
12 G[C>A]G 3.986726e-03 3.691483e-03 4.513223e-04 2.546877e-03 12 G[C>A]G 2.322192e-03 3.185639e-03
13 G[C>A]T 8.260710e-03 7.958102e-03 6.964008e-03 1.757568e-06 13 G[C>A]T 7.355381e-03 4.996044e-03
14 T[C>A]A 1.249317e-02 3.585683e-03 8.718414e-03 1.266466e-02 14 T[C>A]A 1.034505e-02 6.678461e-03
15 T[C>A]C 1.291698e-02 8.850082e-03 1.670388e-04 7.329271e-03 15 T[C>A]C 6.797692e-03 7.873886e-03
16 T[C>A]G 5.004928e-04 1.156145e-03 2.337253e-03 7.830488e-04 16 T[C>A]G 1.360369e-03 1.086867e-03
17 T[C>A]T 1.337425e-02 1.214008e-02 1.530841e-02 8.418327e-03 17 T[C>A]T 1.396581e-02 1.083312e-02
18 A[C>G]A 1.237441e-02 1.981081e-02 1.653601e-02 1.304232e-02 18 A[C>G]A 1.467152e-02 1.752997e-02
19 A[C>G]C 7.834505e-16 3.248220e-10 1.572297e-02 6.551608e-03 19 A[C>G]C 7.058313e-03 3.083366e-03
20 A[C>G]G 2.523774e-03 3.253406e-03 5.114731e-03 7.858234e-04 20 A[C>G]G 3.636692e-03 2.450720e-03
21 A[C>G]T 1.096100e-02 6.928247e-03 1.066230e-02 7.532280e-03 21 A[C>G]T 1.047135e-02 7.097885e-03
22 C[C>G]A 9.424413e-03 3.782759e-03 7.078604e-03 5.700867e-03 22 C[C>G]A 7.937276e-03 4.338985e-03
23 C[C>G]C 8.549212e-03 3.674810e-20 1.851021e-03 7.246756e-03 23 C[C>G]C 5.253641e-03 2.123655e-03
24 C[C>G]G 7.748336e-03 3.487494e-04 2.371674e-03 9.595624e-04 24 C[C>G]G 4.762395e-03 2.428946e-04
25 C[C>G]T 5.480175e-03 9.922058e-03 3.885279e-03 4.326614e-03 25 C[C>G]T 4.952736e-03 7.896379e-03
26 G[C>G]A 1.157248e-02 1.370895e-03 7.806339e-03 3.108266e-20 26 G[C>G]A 8.916999e-03 6.099084e-04
27 G[C>G]C 7.420157e-03 2.171773e-03 1.284785e-04 4.770442e-03 27 G[C>G]C 3.809622e-03 2.817481e-03
28 G[C>G]G 3.372856e-03 1.135636e-03 3.554018e-03 4.457136e-04 28 G[C>G]G 3.211134e-03 8.704721e-04
29 G[C>G]T 8.449691e-03 2.887116e-03 8.619063e-03 4.100463e-03 29 G[C>G]T 8.042910e-03 3.282992e-03
30 T[C>G]A 1.070613e-02 4.177331e-03 7.325655e-03 7.313308e-03 30 T[C>G]A 8.727119e-03 5.133207e-03
31 T[C>G]C 6.976389e-03 3.829361e-03 7.894157e-03 6.971152e-03 31 T[C>G]C 7.206149e-03 4.977209e-03
32 T[C>G]G 1.997729e-03 1.042906e-04 5.183138e-03 3.550364e-03 32 T[C>G]G 3.274678e-03 1.548092e-03
33 T[C>G]T 1.906704e-02 5.403760e-03 2.917595e-02 1.685698e-02 33 T[C>G]T 2.262552e-02 9.859960e-03
34 A[C>T]A 3.131895e-02 3.559289e-02 4.320756e-02 3.595643e-02 34 A[C>T]A 3.702558e-02 3.612675e-02
35 A[C>T]C 1.413245e-02 1.602975e-02 4.547827e-03 1.754285e-02 35 A[C>T]C 1.002069e-02 1.641188e-02
36 A[C>T]G 3.979119e-05 7.124023e-02 2.719950e-02 3.367261e-02 36 A[C>T]G 1.789618e-02 5.847645e-02
37 A[C>T]T 1.859032e-02 1.694007e-02 1.791330e-02 1.441652e-02 37 A[C>T]T 1.803376e-02 1.598155e-02
38 C[C>T]A 9.334568e-03 1.548055e-02 1.339818e-02 1.398155e-02 38 C[C>T]A 1.167880e-02 1.510162e-02
39 C[C>T]C 1.346106e-02 1.657747e-02 9.838139e-03 1.233688e-02 39 C[C>T]C 1.195924e-02 1.497230e-02
40 C[C>T]G 1.184973e-02 4.118642e-02 9.104291e-03 2.848006e-02 40 C[C>T]G 1.280125e-02 3.687739e-02
41 C[C>T]T 1.867309e-02 2.194293e-02 2.160789e-02 3.289596e-02 41 C[C>T]T 2.072727e-02 2.605414e-02
42 G[C>T]A 1.220901e-02 1.830932e-02 8.420540e-03 1.082556e-02 42 G[C>T]A 1.077552e-02 1.555955e-02
43 G[C>T]C 1.165663e-02 1.366817e-02 9.906539e-03 2.030184e-02 43 G[C>T]C 1.131579e-02 1.607356e-02
44 G[C>T]G 2.837739e-02 3.492253e-02 9.763772e-03 3.371439e-02 44 G[C>T]G 2.049063e-02 3.418976e-02
45 G[C>T]T 1.423362e-02 1.172648e-02 1.151020e-02 2.449816e-02 45 G[C>T]T 1.327638e-02 1.629518e-02
46 T[C>T]A 6.181812e-03 1.026000e-02 1.598478e-02 1.784120e-02 46 T[C>T]A 1.125650e-02 1.333035e-02
47 T[C>T]C 1.426343e-02 1.765650e-02 1.686071e-02 1.961689e-02 47 T[C>T]C 1.582151e-02 1.847956e-02
48 T[C>T]G 6.697405e-04 2.981773e-02 8.807199e-03 1.357187e-02 48 T[C>T]G 6.567233e-03 2.424562e-02
49 T[C>T]T 3.425831e-02 3.190586e-02 3.306195e-02 2.416517e-02 49 T[C>T]T 3.319931e-02 2.901933e-02
50 A[T>A]A 1.350407e-02 1.783317e-02 1.433952e-02 1.204297e-02 50 A[T>A]A 1.405615e-02 1.578937e-02
51 A[T>A]C 5.208908e-03 2.426998e-03 4.661406e-03 7.889899e-03 51 A[T>A]C 4.917247e-03 4.376933e-03
52 A[T>A]G 6.203645e-03 7.899487e-03 4.210160e-03 1.020936e-02 52 A[T>A]G 5.550123e-03 8.720574e-03
53 A[T>A]T 1.832951e-02 9.760497e-03 1.283916e-02 1.679321e-02 53 A[T>A]T 1.536717e-02 1.206088e-02
54 C[T>A]A 5.152894e-03 2.995165e-03 7.202406e-03 6.415967e-03 54 C[T>A]A 5.986857e-03 4.293221e-03
55 C[T>A]C 1.288517e-02 1.197751e-02 2.199823e-03 6.184057e-03 55 C[T>A]C 7.778087e-03 9.577001e-03
56 C[T>A]G 1.017668e-02 3.858590e-03 1.797496e-03 6.521194e-03 56 C[T>A]G 5.983379e-03 4.484491e-03
57 C[T>A]T 1.311494e-02 5.783272e-03 4.684082e-03 1.384174e-02 57 C[T>A]T 8.990920e-03 8.394852e-03
58 G[T>A]A 6.264117e-03 1.063500e-03 4.890578e-03 2.764218e-03 58 G[T>A]A 5.240678e-03 1.576264e-03
59 G[T>A]C 7.583102e-04 1.569458e-03 5.251988e-03 3.297294e-03 59 G[T>A]C 2.892533e-03 2.354285e-03
60 G[T>A]G 7.218613e-03 1.024681e-02 6.403638e-03 1.217812e-02 60 G[T>A]G 7.209332e-03 1.096859e-02
61 G[T>A]T 1.447924e-02 8.632744e-03 5.062681e-03 4.542537e-03 61 G[T>A]T 9.614464e-03 6.754049e-03
62 T[T>A]A 6.737527e-03 1.490078e-02 1.449887e-02 8.361527e-03 62 T[T>A]A 1.072587e-02 1.280547e-02
63 T[T>A]C 6.075934e-03 6.914890e-03 3.547468e-03 2.400262e-03 63 T[T>A]C 4.847977e-03 5.204523e-03
64 T[T>A]G 9.247980e-03 2.446205e-03 6.669669e-04 3.742054e-03 64 T[T>A]G 4.900357e-03 2.522573e-03
65 T[T>A]T 3.338055e-02 2.065066e-02 1.611251e-02 1.680514e-02 65 T[T>A]T 2.439672e-02 1.853853e-02
66 A[T>C]A 3.717380e-02 3.265699e-02 4.982621e-02 2.922387e-02 66 A[T>C]A 4.219870e-02 3.178417e-02
67 A[T>C]C 4.082749e-03 8.947616e-03 1.042822e-02 9.205745e-03 67 A[T>C]C 7.399058e-03 9.255617e-03
68 A[T>C]G 5.725035e-03 2.233932e-02 1.897642e-02 1.192167e-02 68 A[T>C]G 1.285954e-02 1.901398e-02
69 A[T>C]T 9.216111e-03 1.218855e-02 1.674300e-02 1.362895e-02 69 A[T>C]T 1.290585e-02 1.296671e-02
70 C[T>C]A 9.092771e-03 6.894784e-03 9.263013e-03 6.566154e-03 70 C[T>C]A 8.946937e-03 6.758427e-03
71 C[T>C]C 1.818673e-02 9.733987e-03 3.899203e-03 7.127605e-03 71 C[T>C]C 1.097622e-02 8.213891e-03
72 C[T>C]G 9.199519e-03 7.413690e-03 1.642174e-02 1.224971e-02 72 C[T>C]G 1.241063e-02 9.404346e-03
73 C[T>C]T 1.327566e-02 9.959621e-03 1.871874e-02 2.250458e-02 73 C[T>C]T 1.587318e-02 1.467435e-02
74 G[T>C]A 1.126406e-02 7.644979e-03 5.362476e-03 1.191308e-02 74 G[T>C]A 8.455188e-03 8.999783e-03
75 G[T>C]C 5.382469e-03 4.828479e-03 1.970185e-12 9.597621e-03 75 G[T>C]C 2.931931e-03 6.618690e-03
76 G[T>C]G 1.123791e-02 1.724741e-02 1.516244e-02 1.372539e-02 76 G[T>C]G 1.342277e-02 1.612988e-02
77 G[T>C]T 1.282307e-02 4.586347e-03 1.411896e-02 1.039154e-02 77 G[T>C]T 1.283681e-02 6.674995e-03
78 T[T>C]A 1.092086e-02 5.588158e-03 8.761926e-03 1.007685e-02 78 T[T>C]A 9.639435e-03 7.100539e-03
79 T[T>C]C 1.803799e-02 2.013810e-02 8.203282e-03 1.529979e-02 79 T[T>C]C 1.361753e-02 1.815807e-02
80 T[T>C]G 8.490634e-03 4.340314e-03 1.235122e-02 4.467692e-03 80 T[T>C]G 9.787002e-03 4.498450e-03
81 T[T>C]T 3.206972e-02 1.668243e-02 3.818623e-02 4.544754e-02 81 T[T>C]T 3.444768e-02 2.723502e-02
82 A[T>G]A 4.607840e-03 1.111060e-02 4.088577e-03 1.675423e-02 82 A[T>G]A 5.198391e-03 1.323929e-02
83 A[T>G]C 2.785895e-20 3.406825e-03 4.944014e-04 2.164564e-03 83 A[T>G]C 4.405440e-04 3.062221e-03
84 A[T>G]G 9.026035e-03 3.004937e-03 5.635912e-03 2.524956e-03 84 A[T>G]G 6.960889e-03 2.631345e-03
85 A[T>G]T 4.203199e-03 5.247793e-03 1.255466e-03 8.623252e-03 85 A[T>G]T 3.082631e-03 6.448524e-03
86 C[T>G]A 2.785895e-20 3.674810e-20 3.467823e-03 6.471005e-03 86 C[T>G]A 1.937101e-03 2.309071e-03
87 C[T>G]C 6.581920e-03 6.843904e-04 1.594754e-03 9.266438e-04 87 C[T>G]C 3.886385e-03 4.826853e-04
88 C[T>G]G 1.978907e-03 5.066625e-03 7.694784e-03 1.800258e-03 88 C[T>G]G 4.677149e-03 4.086015e-03
89 C[T>G]T 1.094034e-03 2.834946e-03 8.971833e-03 3.108266e-20 89 C[T>G]T 4.583659e-03 2.130806e-03
90 G[T>G]A 2.124062e-03 2.575322e-03 3.809196e-03 5.453246e-06 90 G[T>G]A 2.808671e-03 1.699607e-03
91 G[T>G]C 3.641890e-03 3.851018e-03 2.472880e-06 1.886510e-03 91 G[T>G]C 1.950620e-03 3.043178e-03
92 G[T>G]G 8.768503e-03 7.669052e-03 1.102237e-02 9.725885e-03 92 G[T>G]G 9.744602e-03 8.480532e-03
93 G[T>G]T 1.076981e-02 6.207912e-03 6.393167e-03 1.271972e-02 93 G[T>G]T 8.646393e-03 8.409194e-03
94 T[T>G]A 8.496984e-03 2.798437e-03 1.940681e-03 4.645137e-03 94 T[T>G]A 5.149241e-03 3.178257e-03
95 T[T>G]C 2.128895e-03 5.382631e-03 6.346618e-03 5.118158e-03 95 T[T>G]C 4.318309e-03 5.427921e-03
96 T[T>G]G 1.196188e-02 6.471983e-03 1.892812e-02 9.668990e-03 96 T[T>G]G 1.461769e-02 7.848913e-03
97 T[T>G]T 2.241590e-02 2.343561e-02 3.806567e-02 1.368935e-02 97 T[T>G]T 2.902799e-02 2.042809e-02