comparison mutational_patterns.xml @ 8:e0dad46148bf draft

"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit 75fd87e806f9bee2f6ff7fcd3834e55eb21d8710"
author artbio
date Mon, 19 Oct 2020 07:47:24 +0000
parents 34626b2b9907
children 4ff3c984523b
comparison
equal deleted inserted replaced
7:34626b2b9907 8:e0dad46148bf
1 <tool id="mutational_patterns" name="Analyse Mutational Patterns/Signatures" version="2.0.0+galaxy8"> 1 <tool id="mutational_patterns" name="Analyse Mutational Patterns/Signatures" version="2.0.0+galaxy9">
2 <description>from genomic variations in vcf files</description> 2 <description>from genomic variations in vcf files</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="2.0.0=r40_0">bioconductor-mutationalpatterns</requirement> 4 <requirement type="package" version="2.0.0=r40_0">bioconductor-mutationalpatterns</requirement>
5 <requirement type="package" version="1.6.6=r40h6115d3f_1">r-optparse</requirement> 5 <requirement type="package" version="1.6.6=r40h6115d3f_1">r-optparse</requirement>
6 <requirement type="package" version="0.2.20=r40h0357c0b_1002">r-rjson</requirement> 6 <requirement type="package" version="0.2.20=r40h0357c0b_1002">r-rjson</requirement>
229 <param name="choices" value="yes"/> 229 <param name="choices" value="yes"/>
230 </conditional> 230 </conditional>
231 <param name="signum" value="3" /> 231 <param name="signum" value="3" />
232 <output name="cosmic" file="cosmic_output1.pdf" compare="sim_size" ftype="pdf"/> 232 <output name="cosmic" file="cosmic_output1.pdf" compare="sim_size" ftype="pdf"/>
233 </test> 233 </test>
234 <!-- cosmic signature on single sample -->
234 <test> 235 <test>
235 <param name="vcfs"> 236 <param name="vcfs">
236 <collection type="list"> 237 <collection type="list">
237 <element name="1" value="G.vcf"/> 238 <element name="1" value="G.vcf"/>
238 </collection> 239 </collection>