Mercurial > repos > artbio > mutational_patterns

comparison test-data/sigmatrix.tab @ 3:e332cf9dfa06 draft

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"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit 0f7593f703ba0dfd12aea1c0460e371f08b57d2f"
author artbio
date Thu, 24 Sep 2020 01:32:52 +0000
parents
children 8182d1625433
comparison
equal deleted inserted replaced
2:aea952be68cb 3:e332cf9dfa06
1 substitution context NewSig_1 NewSig_2 NewSig_3 NewSig_4
2 C>A A.A 2.012349e-02 2.099063e-02 1.788529e-02 2.529973e-02
3 C>A A.C 1.232623e-02 5.099845e-05 2.019020e-02 8.344265e-03
4 C>A A.G 2.056317e-03 5.061512e-03 5.110667e-03 5.598599e-04
5 C>A A.T 4.276274e-03 7.030586e-03 1.433976e-02 9.044799e-03
6 C>A C.A 9.858499e-03 6.774294e-03 1.254817e-02 1.109854e-02
7 C>A C.C 7.182083e-03 5.137412e-03 1.754580e-02 7.871756e-03
8 C>A C.G 3.071657e-03 7.744685e-04 3.478215e-03 3.033573e-03
9 C>A C.T 9.805120e-04 1.022892e-02 8.612445e-03 1.089991e-02
10 C>A G.A 1.295094e-02 5.191677e-03 2.838657e-03 1.229298e-02
11 C>A G.C 4.262714e-03 5.183579e-03 8.941540e-03 5.390685e-03
12 C>A G.G 3.769228e-03 1.557726e-03 1.699600e-03 3.945304e-03
13 C>A G.T 6.573060e-03 1.031818e-04 1.059791e-02 7.185424e-03
14 C>A T.A 3.862713e-03 1.624881e-02 5.519485e-03 1.246359e-02
15 C>A T.C 8.824563e-03 6.792814e-03 4.042968e-03 1.212436e-02
16 C>A T.G 1.024188e-03 9.815808e-04 2.029646e-03 1.087012e-03
17 C>A T.T 1.181704e-02 9.618044e-03 1.665114e-02 1.307952e-02
18 C>G A.A 1.983228e-02 1.270519e-02 1.655687e-02 1.398506e-02
19 C>G A.C 4.742892e-11 1.043116e-02 9.102239e-03 2.314023e-20
20 C>G A.G 2.906055e-03 1.687383e-03 5.265593e-03 2.218107e-03
21 C>G A.T 6.407465e-03 8.581278e-03 1.079483e-02 9.668306e-03
22 C>G C.A 3.411641e-03 6.888991e-03 7.212837e-03 7.949635e-03
23 C>G C.C 1.962245e-04 9.715947e-03 1.158418e-12 7.156965e-03
24 C>G C.G 3.300401e-20 1.855024e-03 4.346525e-03 6.200559e-03
25 C>G C.T 9.865314e-03 1.922285e-03 6.273441e-03 6.226190e-03
26 C>G G.A 1.351834e-19 2.119713e-03 1.072168e-02 8.229779e-03
27 C>G G.C 2.379848e-03 4.610717e-03 8.965747e-04 6.505033e-03
28 C>G G.G 6.979718e-04 1.181697e-03 4.111756e-03 2.523959e-03
29 C>G G.T 2.220903e-03 5.934769e-03 8.611327e-03 6.739344e-03
30 C>G T.A 3.709345e-03 8.786940e-03 7.620791e-03 8.983741e-03
31 C>G T.C 3.827093e-03 8.865683e-03 6.057793e-03 6.240498e-03
32 C>G T.G 1.899263e-04 4.938065e-03 3.040335e-03 1.626378e-03
33 C>G T.T 3.860261e-03 2.446381e-02 2.353559e-02 1.511199e-02
34 C>T A.A 3.499419e-02 3.714546e-02 4.085734e-02 3.151538e-02
35 C>T A.C 1.719840e-02 1.389005e-02 5.154001e-03 1.603745e-02
36 C>T A.G 7.482535e-02 1.348050e-02 3.052063e-02 1.592390e-02
37 C>T A.T 1.607143e-02 1.438585e-02 1.967215e-02 1.741898e-02
38 C>T C.A 1.606874e-02 1.435234e-02 1.105389e-02 1.125796e-02
39 C>T C.C 1.700219e-02 9.214402e-03 1.282668e-02 1.377429e-02
40 C>T C.G 4.356691e-02 1.624586e-02 1.169686e-02 1.963077e-02
41 C>T C.T 2.301602e-02 3.266347e-02 1.574218e-02 2.039183e-02
42 C>T G.A 1.970589e-02 7.742080e-03 1.178227e-02 1.297792e-02
43 C>T G.C 1.466426e-02 1.914382e-02 6.909098e-03 1.355502e-02
44 C>T G.G 3.701827e-02 2.542796e-02 1.262381e-02 3.190790e-02
45 C>T G.T 1.382222e-02 2.392818e-02 6.174897e-03 1.508942e-02
46 C>T T.A 1.143013e-02 1.914536e-02 1.002998e-02 7.458921e-03
47 C>T T.C 1.879514e-02 2.009898e-02 1.421423e-02 1.556176e-02
48 C>T T.G 3.061491e-02 4.743450e-03 1.167740e-02 7.144683e-03
49 C>T T.T 3.133938e-02 2.219653e-02 3.807693e-02 3.192865e-02
50 T>A A.A 1.841481e-02 8.914346e-03 1.741295e-02 1.361688e-02
51 T>A A.C 3.425691e-03 8.698638e-03 3.992626e-03 5.443164e-03
52 T>A A.G 9.072656e-03 1.149533e-02 1.354019e-03 8.223373e-03
53 T>A A.T 9.659453e-03 1.830189e-02 1.174139e-02 1.710128e-02
54 T>A C.A 2.727069e-03 7.915424e-03 5.772823e-03 4.530720e-03
55 T>A C.C 1.215316e-02 3.470147e-03 7.886743e-03 1.369393e-02
56 T>A C.G 3.791221e-03 6.605963e-03 3.294232e-03 8.818173e-03
57 T>A C.T 6.289729e-03 1.435186e-02 3.597548e-03 1.211551e-02
58 T>A G.A 6.615841e-04 4.146662e-03 4.933783e-03 4.863214e-03
59 T>A G.C 1.515807e-03 4.210462e-03 3.382936e-03 9.183128e-04
60 T>A G.G 1.070023e-02 1.089710e-02 5.492536e-03 8.802992e-03
61 T>A G.T 8.128051e-03 4.233917e-03 9.103699e-03 1.259684e-02
62 T>A T.A 1.476324e-02 6.549494e-03 1.579044e-02 7.620545e-03
63 T>A T.C 6.738527e-03 8.767946e-04 7.353978e-03 5.436410e-03
64 T>A T.G 2.186518e-03 5.445354e-03 2.568144e-03 7.932364e-03
65 T>A T.T 1.942541e-02 1.590353e-02 2.306069e-02 3.009347e-02
66 T>C A.A 3.011297e-02 3.375076e-02 4.906885e-02 3.383597e-02
67 T>C A.C 9.041893e-03 8.933211e-03 8.243474e-03 6.303632e-03
68 T>C A.G 2.247578e-02 9.001629e-03 1.950973e-02 8.972544e-03
69 T>C A.T 1.210116e-02 1.578255e-02 1.360358e-02 9.528566e-03
70 T>C C.A 6.835997e-03 6.652934e-03 1.036887e-02 7.994706e-03
71 T>C C.C 9.462334e-03 6.392714e-03 8.437885e-03 1.653238e-02
72 T>C C.G 7.156018e-03 1.612832e-02 1.225799e-02 9.579249e-03
73 T>C C.T 1.040136e-02 2.530647e-02 1.208573e-02 1.371705e-02
74 T>C G.A 8.743261e-03 1.074754e-02 5.087249e-03 1.090594e-02
75 T>C G.C 6.111817e-03 6.456267e-03 3.668932e-20 6.346677e-03
76 T>C G.G 1.768834e-02 1.377477e-02 1.512171e-02 1.240640e-02
77 T>C G.T 3.605052e-03 1.397132e-02 1.282818e-02 1.036663e-02
78 T>C T.A 5.577357e-03 1.122841e-02 7.516272e-03 9.852123e-03
79 T>C T.C 2.142753e-02 1.003311e-02 1.311934e-02 1.883301e-02
80 T>C T.G 3.231084e-03 7.639140e-03 1.374439e-02 6.010940e-03
81 T>C T.T 1.771125e-02 5.247659e-02 2.430165e-02 3.016747e-02
82 T>G A.A 1.331124e-02 1.426333e-02 7.805243e-05 7.473665e-03
83 T>G A.C 3.887921e-03 1.684454e-03 1.435130e-04 6.445063e-04
84 T>G A.G 2.394241e-03 5.040173e-03 6.853239e-03 6.994037e-03
85 T>G A.T 6.066623e-03 7.374853e-03 2.079215e-10 5.136694e-03
86 T>G C.A 5.000218e-10 8.218020e-03 3.668932e-20 2.314023e-20
87 T>G C.C 3.300401e-20 1.904378e-03 4.043369e-03 4.672135e-03
88 T>G C.G 4.310666e-03 2.256883e-03 8.181657e-03 1.928646e-03
89 T>G C.T 2.128603e-03 9.425709e-04 8.787753e-03 6.815812e-04
90 T>G G.A 2.012235e-03 4.628783e-04 4.459546e-03 1.814827e-03
91 T>G G.C 3.997247e-03 1.335924e-03 1.270853e-03 3.568581e-03
92 T>G G.G 7.790802e-03 1.175435e-02 8.700500e-03 8.985015e-03
93 T>G G.T 6.538479e-03 1.329525e-02 4.903674e-03 1.074729e-02
94 T>G T.A 2.781217e-03 4.774228e-03 2.965653e-03 7.301491e-03
95 T>G T.C 5.182071e-03 5.200467e-03 5.617300e-03 2.629881e-03
96 T>G T.G 5.245736e-03 1.345072e-02 1.698469e-02 9.832179e-03
97 T>G T.T 2.041928e-02 1.752970e-02 3.978473e-02 1.976735e-02